mRNA_H-paniculata_contig4264.10905.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4264.10905.1
Unique NamemRNA_H-paniculata_contig4264.10905.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4264.10905.1 vs. uniprot
Match: D8LLI4_ECTSI (SEN1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI4_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.290e-21
Identity = 49/77 (63.64%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    1 MSYPELLQDGEIEESFLTALRQVTSCGNECFSGSGWERHRSGVLTLLVHRNANVRQWAQSMARRSGIISAKVYREVL 231
            +SY +LL+DG IE +FL AL QVTS G   FSG  W +H  GVLTLLVHR A+ R WAQSMARR+G I AK Y EVL
Sbjct:  272 LSYSQLLEDGGIEGAFLAALSQVTSSGEGVFSGEEWNQHWPGVLTLLVHREASTRAWAQSMARRAGGIRAKEYVEVL 348
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4264.10905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLI4_ECTSI1.290e-2163.64SEN1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4264contigH-paniculata_contig4264:13332..14070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size233
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930296.9662092-CDS-H-paniculata_contig4264:13331..133971622930296.9662092-CDS-H-paniculata_contig4264:13331..13397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4264 13332..13397 +
1691481230.3445146-CDS-H-paniculata_contig4264:13331..133971691481230.3445146-CDS-H-paniculata_contig4264:13331..13397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4264 13332..13397 +
1622930296.979935-CDS-H-paniculata_contig4264:13905..140701622930296.979935-CDS-H-paniculata_contig4264:13905..14070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4264 13906..14070 +
1691481230.3556516-CDS-H-paniculata_contig4264:13905..140701691481230.3556516-CDS-H-paniculata_contig4264:13905..14070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4264 13906..14070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4264.10905.1prot_H-paniculata_contig4264.10905.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4264 13332..14070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4264.10905.1

>prot_H-paniculata_contig4264.10905.1 ID=prot_H-paniculata_contig4264.10905.1|Name=mRNA_H-paniculata_contig4264.10905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MSYPELLQDGEIEESFLTALRQVTSCGNECFSGSGWERHRSGVLTLLVHR
NANVRQWAQSMARRSGIISAKVYREVL
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mRNA from alignment at H-paniculata_contig4264:13332..14070+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4264.10905.1 ID=mRNA_H-paniculata_contig4264.10905.1|Name=mRNA_H-paniculata_contig4264.10905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=739bp|location=Sequence derived from alignment at H-paniculata_contig4264:13332..14070+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATACCCAGAACTGCTACAGGATGGCGAGATAGAGGAATCTTTCTT
GACCGCTCTCAGGCAGGTGTGCACTACTCTGCTGTGGTGAACGCAATGTA
CGAATGTAGTTATCGAGTGCGTGGGGGTTTGCAGCAGCATGAACATTTGC
CCCATACTGAAAAAAATGTATACTCGTTCTTGAACTTGAGCATTCTGATG
GCTAAGGAGCATTATCGCCTGTGCAATACCCAAGAGGTTTCATTCACCTT
CGTAACGTGACGATCAGACATTGAATAAGTAGTAGTCCCGTCGACCGTCA
CGGCAGTTCTCGTCTATGTGTGTTAAAGAGGTTTCTGACTTCTTGTTTTC
AATCGGAACGAGTGGTTCATCCTGAACAGAACTTTCTCGGGTGATCAGCT
TGACCCAGAGCTGACCTTAAAACACCATTGATGATTATTATTAGTTTCCA
AAGTTCGCCGGCCCGATCATTTCGCGCATAATATCAGTGCTGTCGATCGT
TTTTCTTGAGGTCAACAATAGGAGTTAAGCCCGCGGCGCGTACTGTGCGC
TTCCTCCACTCCTTGCGGCTTCAGGTTACTAGCTGCGGCAACGAGTGCTT
CTCTGGGTCAGGGTGGGAGCGTCACCGGTCTGGTGTGCTCACTCTTTTGG
TTCACAGGAACGCGAACGTTCGGCAGTGGGCGCAATCTATGGCCAGGAGA
TCGGGCATCATCAGCGCGAAGGTCTACCGCGAGGTGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4264:13332..14070+

>mRNA_H-paniculata_contig4264.10905.1 ID=mRNA_H-paniculata_contig4264.10905.1|Name=mRNA_H-paniculata_contig4264.10905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig4264:13332..14070+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATACCCAGAACTGCTACAGGATGGCGAGATAGAGGAATCTTTCTT
GACCGCTCTCAGGCAGATGTCATACCCAGAACTGCTACAGGATGGCGAGA
TAGAGGAATCTTTCTTGACCGCTCTCAGGCAGGTTACTAGCTGCGGCAAC
GAGTGCTTCTCTGGGTCAGGGTGGGAGCGTCACCGGTCTGGTGTGCTCAC
TCTTTTGGTTCACAGGAACGCGAACGTTCGGCAGTGGGCGCAATCTATGG
CCAGGAGATCGGGCATCATCAGCGCGAAGGTCTACCGCGAGGTGTTGGTT
ACTAGCTGCGGCAACGAGTGCTTCTCTGGGTCAGGGTGGGAGCGTCACCG
GTCTGGTGTGCTCACTCTTTTGGTTCACAGGAACGCGAACGTTCGGCAGT
GGGCGCAATCTATGGCCAGGAGATCGGGCATCATCAGCGCGAAGGTCTAC
CGCGAGGTGTTG
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