mRNA_H-paniculata_contig4264.10902.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4264.10902.1
Unique NamemRNA_H-paniculata_contig4264.10902.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4264.10902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4264contigH-paniculata_contig4264:10483..11090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size609
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930296.652471-UTR-H-paniculata_contig4264:10482..107691622930296.652471-UTR-H-paniculata_contig4264:10482..10769Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4264 10483..10769 +
1691481230.2294438-UTR-H-paniculata_contig4264:10482..107691691481230.2294438-UTR-H-paniculata_contig4264:10482..10769Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4264 10483..10769 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930296.6831558-CDS-H-paniculata_contig4264:10769..110901622930296.6831558-CDS-H-paniculata_contig4264:10769..11090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4264 10770..11090 +
1691481230.2409794-CDS-H-paniculata_contig4264:10769..110901691481230.2409794-CDS-H-paniculata_contig4264:10769..11090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4264 10770..11090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4264.10902.1prot_H-paniculata_contig4264.10902.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4264 10770..11090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4264.10902.1

>prot_H-paniculata_contig4264.10902.1 ID=prot_H-paniculata_contig4264.10902.1|Name=mRNA_H-paniculata_contig4264.10902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MTSWSDVEVISIGSDSEGPDSESIDDPVEEEIFSQVQGEDELFDVDDAEE
TLIEHVCEDQPETEVETQLEVLLSQPSHGAGPSSPSSKRKGGKELPHNRV
FGSRSSA
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mRNA from alignment at H-paniculata_contig4264:10483..11090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4264.10902.1 ID=mRNA_H-paniculata_contig4264.10902.1|Name=mRNA_H-paniculata_contig4264.10902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=608bp|location=Sequence derived from alignment at H-paniculata_contig4264:10483..11090+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTTGGTTGCTATGTGGTCAACGTTTTGGAACAGTGACGACTCTCTGTCT
CTACAGCCCGTCACGTTAGCGGGCAGGAGCTACCCACCCATCGCTAAGCG
GTGTTGTGCAAAGATATGTACAGCGTATAGGGTGCGGTAGAAAACACCTG
CTCCCGAACACTGCAGCGGCCCTAGTGGTGGATAATTGGTGTGTATGTGT
GAATTTGCTTGAATTCAAACCGGTAGTGTACTGCTGAGTGCTGTACTACT
GCATTGTATTGTCGGTGCCAGGTGCTGTTTGGGTAAGATGACTTCTTGGT
CAGATGTAGAGGTGATCAGCATCGGCAGCGACAGCGAAGGCCCCGATTCC
GAGAGCATCGACGATCCAGTGGAGGAAGAGATATTCAGCCAAGTGCAAGG
AGAAGACGAATTGTTCGATGTGGACGATGCAGAAGAGACTCTAATTGAAC
ATGTGTGCGAGGACCAACCGGAAACTGAAGTTGAGACCCAGCTGGAGGTA
CTGCTGTCGCAGCCTTCTCATGGAGCTGGCCCTTCCTCGCCATCAAGTAA
ACGGAAGGGAGGCAAAGAGCTTCCTCACAATCGTGTTTTCGGCTCGCGCT
CCAGTGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig4264:10483..11090+

>mRNA_H-paniculata_contig4264.10902.1 ID=mRNA_H-paniculata_contig4264.10902.1|Name=mRNA_H-paniculata_contig4264.10902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig4264:10483..11090+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTTCTTGGTCAGATGTAGAGGTGATCAGCATCGGCAGCGACAGCGA
AGGCCCCGATTCCGAGAGCATCGACGATCCAGTGGAGGAAGAGATATTCA
GCCAAGTGCAAGGAGAAGACGAATTGTTCGATGTGGACGATGCAGAAGAG
ACTCTAATTGAACATGTGTGCGAGGACCAACCGGAAACTGAAGTTGAGAC
CCAGCTGGAGGTACTGCTGTCGCAGCCTTCTCATGGAGCTGGCCCTTCCT
CGCCATCAAGTAAACGGAAGGGAGGCAAAGAGCTTCCTCACAATCGTGTT
TTCGGCTCGCGCTCCAGTGCTATGACTTCTTGGTCAGATGTAGAGGTGAT
CAGCATCGGCAGCGACAGCGAAGGCCCCGATTCCGAGAGCATCGACGATC
CAGTGGAGGAAGAGATATTCAGCCAAGTGCAAGGAGAAGACGAATTGTTC
GATGTGGACGATGCAGAAGAGACTCTAATTGAACATGTGTGCGAGGACCA
ACCGGAAACTGAAGTTGAGACCCAGCTGGAGGTACTGCTGTCGCAGCCTT
CTCATGGAGCTGGCCCTTCCTCGCCATCAAGTAAACGGAAGGGAGGCAAA
GAGCTTCCTCACAATCGTGTTTTCGGCTCGCGCTCCAGTGCT
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