mRNA_H-paniculata_contig11702.1090.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11702.1090.1
Unique NamemRNA_H-paniculata_contig11702.1090.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11702.1090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11702contigH-paniculata_contig11702:3173..3706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size536
Cds size345
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928879.2752292-UTR-H-paniculata_contig11702:3172..33611622928879.2752292-UTR-H-paniculata_contig11702:3172..3361Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11702 3173..3361 +
1691480654.5622463-UTR-H-paniculata_contig11702:3172..33611691480654.5622463-UTR-H-paniculata_contig11702:3172..3361Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11702 3173..3361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928879.2933805-CDS-H-paniculata_contig11702:3361..37061622928879.2933805-CDS-H-paniculata_contig11702:3361..3706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11702 3362..3706 +
1691480654.5708675-CDS-H-paniculata_contig11702:3361..37061691480654.5708675-CDS-H-paniculata_contig11702:3361..3706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11702 3362..3706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11702.1090.1prot_H-paniculata_contig11702.1090.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11702 3362..3706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11702.1090.1

>prot_H-paniculata_contig11702.1090.1 ID=prot_H-paniculata_contig11702.1090.1|Name=mRNA_H-paniculata_contig11702.1090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MPGYTPANLHHREHPAWHLMVYWRGALPRFILSLASGCRPSPGTFSFARI
YRYNSTFLVRPAVVGLASIDWSRGRVVTHHEDQPLLWHSLLRLYNLRIRA
HTEPLDGDSRPGARW
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mRNA from alignment at H-paniculata_contig11702:3173..3706+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11702.1090.1 ID=mRNA_H-paniculata_contig11702.1090.1|Name=mRNA_H-paniculata_contig11702.1090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=534bp|location=Sequence derived from alignment at H-paniculata_contig11702:3173..3706+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGTAACGATAAGCGTAGCATCTAACCAGATTTTCTCCAAGGAGCTCAG
TTTGTGGTCACATTTCCTTCTCCATCATTTACGCCTGGTACCCATGGTTG
CCCTTACACGGAGTCACGCCGATACCTTAGCGGTTACCATCTGCAAAAGA
CAAGTTTCCAAAAGATATACACGTATACGGCCTTACTGAATGCCAGGGTA
TACTCCGGCTAACCTACACCATCGCGAACACCCCGCCTGGCACCTCATGG
TGTATTGGCGTGGCGCTCTCCCGCGTTTCATACTCTCTCTTGCTTCCGGA
TGCCGGCCTTCTCCCGGCACGTTCAGCTTTGCCCGCATCTACCGCTACAA
TTCGACCTTCTTGGTTCGCCCTGCAGTCGTTGGGCTTGCCTCGATTGATT
GGTCCCGTGGGCGGGTGGTCACACATCATGAAGATCAGCCCCTGCTGTGG
CACTCACTGCTAAGGTTATACAACCTCCGAATTAGAGCGCACACTGAACC
GCTTGACGGAGATAGCAGGCCAGGCGCCCGTTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11702:3173..3706+

>mRNA_H-paniculata_contig11702.1090.1 ID=mRNA_H-paniculata_contig11702.1090.1|Name=mRNA_H-paniculata_contig11702.1090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig11702:3173..3706+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAGGGTATACTCCGGCTAACCTACACCATCGCGAACACCCCGCCTG
GCACCTCATGGTGTATTGGCGTGGCGCTCTCCCGCGTTTCATACTCTCTC
TTGCTTCCGGATGCCGGCCTTCTCCCGGCACGTTCAGCTTTGCCCGCATC
TACCGCTACAATTCGACCTTCTTGGTTCGCCCTGCAGTCGTTGGGCTTGC
CTCGATTGATTGGTCCCGTGGGCGGGTGGTCACACATCATGAAGATCAGC
CCCTGCTGTGGCACTCACTGCTAAGGTTATACAACCTCCGAATTAGAGCG
CACACTGAACCGCTTGACGGAGATAGCAGGCCAGGCGCCCGTTGGATGCC
AGGGTATACTCCGGCTAACCTACACCATCGCGAACACCCCGCCTGGCACC
TCATGGTGTATTGGCGTGGCGCTCTCCCGCGTTTCATACTCTCTCTTGCT
TCCGGATGCCGGCCTTCTCCCGGCACGTTCAGCTTTGCCCGCATCTACCG
CTACAATTCGACCTTCTTGGTTCGCCCTGCAGTCGTTGGGCTTGCCTCGA
TTGATTGGTCCCGTGGGCGGGTGGTCACACATCATGAAGATCAGCCCCTG
CTGTGGCACTCACTGCTAAGGTTATACAACCTCCGAATTAGAGCGCACAC
TGAACCGCTTGACGGAGATAGCAGGCCAGGCGCCCGTTGG
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