mRNA_H-paniculata_contig42638.10900.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Match: D8LCC0_ECTSI (Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC0_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 2.840e-12 Identity = 32/76 (42.11%), Postives = 42/76 (55.26%), Query Frame = 1
Query: 4 CLDNRSHSHAFGHNLGCYLNRENTSVDKPYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTGT 231
CLDN SH H GHN+G NRE+TS + Y H R C P+ TIM+ + QAPR+ +S + T+ GT
Sbjct: 323 CLDNLSHIHEIGHNMGANHNREDTSSEHDYAHAQRYCTGDTPYRTIMAYETGCLQAPRVAMFSTQDKTYASKSLGT 398
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Match: T2G9U4_MEGG1 (Uncharacterized protein n=2 Tax=Megalodesulfovibrio gigas TaxID=879 RepID=T2G9U4_MEGG1) HSP 1 Score: 59.7 bits (143), Expect = 1.280e-8 Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 1
Query: 19 SHSHAFGHNLGCYLNRENTSVDK--PYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTG 228
S +H GHN G + +R +TS Y +GY+ F TIM+ CS R+N++SNPE ++ G PTG
Sbjct: 318 SFAHECGHNQGAHHDRASTSGQGVYSYSYGYQQLSASPQFRTIMAYNCSGDGCERVNYWSNPEVSYNGYPTG 389
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Match: A0A7T0G2Z3_9BACT (Uncharacterized protein n=1 Tax=Candidatus Nitrohelix vancouverensis TaxID=2705534 RepID=A0A7T0G2Z3_9BACT) HSP 1 Score: 59.3 bits (142), Expect = 1.790e-8 Identity = 30/80 (37.50%), Postives = 41/80 (51.25%), Query Frame = 1
Query: 4 CLDNRSHSHAFGHNLGCYLNRENTSVDKP---YEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTGTA 234
C+ N + +H GHNLG +R N + D + HGY DT F TIM + RI ++SNP+AT+ G G A
Sbjct: 308 CISNHTFTHEIGHNLGARHDRANDNTDNSPFTFNHGY--IDTSNNFRTIMGTQTGCSTCTRIQYWSNPDATYNGAVLGVA 385
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Match: K6HA13_9DELT (Uncharacterized protein n=1 Tax=Solidesulfovibrio magneticus str. Maddingley MBC34 TaxID=1206767 RepID=K6HA13_9DELT) HSP 1 Score: 56.2 bits (134), Expect = 2.140e-7 Identity = 27/70 (38.57%), Postives = 38/70 (54.29%), Query Frame = 1
Query: 25 SHAFGHNLGCYLNRENTS--VDKPYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTG 228
+H GHN G R N S + Y +GY+ PF TIM+ C G R+N++SNP+ ++ G PTG
Sbjct: 332 AHECGHNQGAQHERANASPPILYSYAYGYQQTAASPPFRTIMAYNCDGG-CTRVNYWSNPDVSYNGYPTG 400
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Match: A0A2V8M050_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8M050_9BACT) HSP 1 Score: 56.2 bits (134), Expect = 2.150e-7 Identity = 30/81 (37.04%), Postives = 44/81 (54.32%), Query Frame = 1
Query: 7 LDNRSHSHAFGHNLGCYLNRENTSVDK-------PYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTG 228
+DN + +H GHN+G + +++ + D PY +GY+ F TIM+ G PRIN++SNP T GLPTG
Sbjct: 316 VDNYTFAHEMGHNMGAHHAKDDLNPDGTVPSGAYPYSNGYKQKTGPNRFRTIMAYDGDCG-CPRINYWSNPNVTVSGLPTG 395
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Match: A0A0S2F801_LYSAN (Peptidyl-Asp metalloendopeptidase domain protein n=3 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A0S2F801_LYSAN) HSP 1 Score: 55.5 bits (132), Expect = 3.980e-7 Identity = 29/73 (39.73%), Postives = 41/73 (56.16%), Query Frame = 1
Query: 19 SHSHAFGHNLGCYLN-RENTSVDKPYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTGTA 234
S +H GHN G + + T+ PY HGY + + TIM+ C S PR+N++SNP T+ G+P GTA
Sbjct: 333 SFAHEIGHNFGAHHDPNSGTNGTYPYGHGYWA--PNKTWRTIMAYNCGSN-CPRLNYWSNPNITYNGVPMGTA 402
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Match: UPI0012446EA6 (Uncharacterized protein n=5 Tax=Cupriavidus pauculus TaxID=82633 RepID=UPI0012446EA6) HSP 1 Score: 55.5 bits (132), Expect = 4.080e-7 Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 1
Query: 7 LDNRSHSHAFGHNLGCYLNRENTSVDKPYEHGYRSCDTQLP--FSTIMSVKCSSG-QAPRINFYSNPEATWRGLPTGTA 234
+ N + +H GH LG + E TS +K Y +GY +LP + TIM+ CSSG PR+N++S+P ++RG+P G A
Sbjct: 543 IGNYTFAHEIGHLLGA-THDEQTSTNKNYPYGY---GYKLPGKWRTIMAYSCSSGGDCPRLNYWSSPTLSFRGVPLGDA 617
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Match: A0A7V2G4H5_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A7V2G4H5_9BACT) HSP 1 Score: 55.5 bits (132), Expect = 4.160e-7 Identity = 29/75 (38.67%), Postives = 42/75 (56.00%), Query Frame = 1
Query: 28 HAFGHNLGCYLNRENTSVDKPYEH----GYRSCDTQLP--FSTIMSVKCSSGQAPRINFYSNPEATWRGLPTGTA 234
H GHN+GC NR N + + PY + GY P + T+ +V + G A RI ++SNP+ T+ G+PTG A
Sbjct: 392 HEVGHNMGCLHNRANNASNGPYGNATGGGYSFGREFTPAGYPTMRTVMSAVGSATRIPYFSNPDVTYLGVPTGVA 466
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Match: UPI001926534C (M12 family metallo-peptidase n=1 Tax=Cedecea davisae TaxID=158484 RepID=UPI001926534C) HSP 1 Score: 54.7 bits (130), Expect = 7.450e-7 Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 1
Query: 25 SHAFGHNLGC---YLNRENTSVDKP-YEHGYRSCDTQLPFS---TIMSVKCSSGQAPRINFYSNPEATWRGLPTGT 231
+H GHN+G T P Y HGY+ ++++ TIMS C+SG R+N +SNP T+RGLPTG+
Sbjct: 322 AHEMGHNIGVSHELAQYNGTPKRLPCYRHGYKH-ESEIALERWRTIMSYNCTSGNCDRLNMFSNPRYTYRGLPTGS 396
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Match: A0A0B1U3Q4_9DELT (Uncharacterized protein n=1 Tax=Desulfovibrio sp. TomC TaxID=1562888 RepID=A0A0B1U3Q4_9DELT) HSP 1 Score: 54.7 bits (130), Expect = 7.490e-7 Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 1
Query: 19 SHSHAFGHNLGCYLNRENT--SVDKPYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTG 228
S +H GHN G + +R N S+ Y +G++ F TIM+ CS R+N++SNPE +++G PTG
Sbjct: 336 SFAHECGHNQGAHHDRANAGGSILYSYAYGFQQTAASPAFRTIMAYNCSPS-CTRVNYWSNPEVSYKGYPTG 406 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig42638.10900.1 >prot_H-paniculata_contig42638.10900.1 ID=prot_H-paniculata_contig42638.10900.1|Name=mRNA_H-paniculata_contig42638.10900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp SCLDNRSHSHAFGHNLGCYLNRENTSVDKPYEHGYRSCDTQLPFSTIMSVback to top mRNA from alignment at H-paniculata_contig42638:130..769- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig42638.10900.1 ID=mRNA_H-paniculata_contig42638.10900.1|Name=mRNA_H-paniculata_contig42638.10900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=640bp|location=Sequence derived from alignment at H-paniculata_contig42638:130..769- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig42638:130..769- >mRNA_H-paniculata_contig42638.10900.1 ID=mRNA_H-paniculata_contig42638.10900.1|Name=mRNA_H-paniculata_contig42638.10900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig42638:130..769- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |