mRNA_H-paniculata_contig42638.10900.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42638.10900.1
Unique NamemRNA_H-paniculata_contig42638.10900.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Match: D8LCC0_ECTSI (Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC0_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.840e-12
Identity = 32/76 (42.11%), Postives = 42/76 (55.26%), Query Frame = 1
Query:    4 CLDNRSHSHAFGHNLGCYLNRENTSVDKPYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTGT 231
            CLDN SH H  GHN+G   NRE+TS +  Y H  R C    P+ TIM+ +    QAPR+  +S  + T+     GT
Sbjct:  323 CLDNLSHIHEIGHNMGANHNREDTSSEHDYAHAQRYCTGDTPYRTIMAYETGCLQAPRVAMFSTQDKTYASKSLGT 398          
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Match: T2G9U4_MEGG1 (Uncharacterized protein n=2 Tax=Megalodesulfovibrio gigas TaxID=879 RepID=T2G9U4_MEGG1)

HSP 1 Score: 59.7 bits (143), Expect = 1.280e-8
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 1
Query:   19 SHSHAFGHNLGCYLNRENTSVDK--PYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTG 228
            S +H  GHN G + +R +TS      Y +GY+       F TIM+  CS     R+N++SNPE ++ G PTG
Sbjct:  318 SFAHECGHNQGAHHDRASTSGQGVYSYSYGYQQLSASPQFRTIMAYNCSGDGCERVNYWSNPEVSYNGYPTG 389          
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Match: A0A7T0G2Z3_9BACT (Uncharacterized protein n=1 Tax=Candidatus Nitrohelix vancouverensis TaxID=2705534 RepID=A0A7T0G2Z3_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 1.790e-8
Identity = 30/80 (37.50%), Postives = 41/80 (51.25%), Query Frame = 1
Query:    4 CLDNRSHSHAFGHNLGCYLNRENTSVDKP---YEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTGTA 234
            C+ N + +H  GHNLG   +R N + D     + HGY   DT   F TIM  +       RI ++SNP+AT+ G   G A
Sbjct:  308 CISNHTFTHEIGHNLGARHDRANDNTDNSPFTFNHGY--IDTSNNFRTIMGTQTGCSTCTRIQYWSNPDATYNGAVLGVA 385          
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Match: K6HA13_9DELT (Uncharacterized protein n=1 Tax=Solidesulfovibrio magneticus str. Maddingley MBC34 TaxID=1206767 RepID=K6HA13_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 2.140e-7
Identity = 27/70 (38.57%), Postives = 38/70 (54.29%), Query Frame = 1
Query:   25 SHAFGHNLGCYLNRENTS--VDKPYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTG 228
            +H  GHN G    R N S  +   Y +GY+      PF TIM+  C  G   R+N++SNP+ ++ G PTG
Sbjct:  332 AHECGHNQGAQHERANASPPILYSYAYGYQQTAASPPFRTIMAYNCDGG-CTRVNYWSNPDVSYNGYPTG 400          
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Match: A0A2V8M050_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8M050_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 2.150e-7
Identity = 30/81 (37.04%), Postives = 44/81 (54.32%), Query Frame = 1
Query:    7 LDNRSHSHAFGHNLGCYLNRENTSVDK-------PYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTG 228
            +DN + +H  GHN+G +  +++ + D        PY +GY+       F TIM+     G  PRIN++SNP  T  GLPTG
Sbjct:  316 VDNYTFAHEMGHNMGAHHAKDDLNPDGTVPSGAYPYSNGYKQKTGPNRFRTIMAYDGDCG-CPRINYWSNPNVTVSGLPTG 395          
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Match: A0A0S2F801_LYSAN (Peptidyl-Asp metalloendopeptidase domain protein n=3 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A0S2F801_LYSAN)

HSP 1 Score: 55.5 bits (132), Expect = 3.980e-7
Identity = 29/73 (39.73%), Postives = 41/73 (56.16%), Query Frame = 1
Query:   19 SHSHAFGHNLGCYLN-RENTSVDKPYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTGTA 234
            S +H  GHN G + +    T+   PY HGY +      + TIM+  C S   PR+N++SNP  T+ G+P GTA
Sbjct:  333 SFAHEIGHNFGAHHDPNSGTNGTYPYGHGYWA--PNKTWRTIMAYNCGSN-CPRLNYWSNPNITYNGVPMGTA 402          
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Match: UPI0012446EA6 (Uncharacterized protein n=5 Tax=Cupriavidus pauculus TaxID=82633 RepID=UPI0012446EA6)

HSP 1 Score: 55.5 bits (132), Expect = 4.080e-7
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    7 LDNRSHSHAFGHNLGCYLNRENTSVDKPYEHGYRSCDTQLP--FSTIMSVKCSSG-QAPRINFYSNPEATWRGLPTGTA 234
            + N + +H  GH LG   + E TS +K Y +GY     +LP  + TIM+  CSSG   PR+N++S+P  ++RG+P G A
Sbjct:  543 IGNYTFAHEIGHLLGA-THDEQTSTNKNYPYGY---GYKLPGKWRTIMAYSCSSGGDCPRLNYWSSPTLSFRGVPLGDA 617          
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Match: A0A7V2G4H5_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A7V2G4H5_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 4.160e-7
Identity = 29/75 (38.67%), Postives = 42/75 (56.00%), Query Frame = 1
Query:   28 HAFGHNLGCYLNRENTSVDKPYEH----GYRSCDTQLP--FSTIMSVKCSSGQAPRINFYSNPEATWRGLPTGTA 234
            H  GHN+GC  NR N + + PY +    GY       P  + T+ +V  + G A RI ++SNP+ T+ G+PTG A
Sbjct:  392 HEVGHNMGCLHNRANNASNGPYGNATGGGYSFGREFTPAGYPTMRTVMSAVGSATRIPYFSNPDVTYLGVPTGVA 466          
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Match: UPI001926534C (M12 family metallo-peptidase n=1 Tax=Cedecea davisae TaxID=158484 RepID=UPI001926534C)

HSP 1 Score: 54.7 bits (130), Expect = 7.450e-7
Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 1
Query:   25 SHAFGHNLGC---YLNRENTSVDKP-YEHGYRSCDTQLPFS---TIMSVKCSSGQAPRINFYSNPEATWRGLPTGT 231
            +H  GHN+G          T    P Y HGY+  ++++      TIMS  C+SG   R+N +SNP  T+RGLPTG+
Sbjct:  322 AHEMGHNIGVSHELAQYNGTPKRLPCYRHGYKH-ESEIALERWRTIMSYNCTSGNCDRLNMFSNPRYTYRGLPTGS 396          
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Match: A0A0B1U3Q4_9DELT (Uncharacterized protein n=1 Tax=Desulfovibrio sp. TomC TaxID=1562888 RepID=A0A0B1U3Q4_9DELT)

HSP 1 Score: 54.7 bits (130), Expect = 7.490e-7
Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 1
Query:   19 SHSHAFGHNLGCYLNRENT--SVDKPYEHGYRSCDTQLPFSTIMSVKCSSGQAPRINFYSNPEATWRGLPTG 228
            S +H  GHN G + +R N   S+   Y +G++       F TIM+  CS     R+N++SNPE +++G PTG
Sbjct:  336 SFAHECGHNQGAHHDRANAGGSILYSYAYGFQQTAASPAFRTIMAYNCSPS-CTRVNYWSNPEVSYKGYPTG 406          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42638.10900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LCC0_ECTSI2.840e-1242.11Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarp... [more]
T2G9U4_MEGG11.280e-838.89Uncharacterized protein n=2 Tax=Megalodesulfovibri... [more]
A0A7T0G2Z3_9BACT1.790e-837.50Uncharacterized protein n=1 Tax=Candidatus Nitrohe... [more]
K6HA13_9DELT2.140e-738.57Uncharacterized protein n=1 Tax=Solidesulfovibrio ... [more]
A0A2V8M050_9BACT2.150e-737.04Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A0S2F801_LYSAN3.980e-739.73Peptidyl-Asp metalloendopeptidase domain protein n... [more]
UPI0012446EA64.080e-740.51Uncharacterized protein n=5 Tax=Cupriavidus paucul... [more]
A0A7V2G4H5_9BACT4.160e-738.67Uncharacterized protein (Fragment) n=1 Tax=Chthoni... [more]
UPI001926534C7.450e-739.47M12 family metallo-peptidase n=1 Tax=Cedecea davis... [more]
A0A0B1U3Q4_9DELT7.490e-737.50Uncharacterized protein n=1 Tax=Desulfovibrio sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42638contigH-paniculata_contig42638:130..769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.1
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog1304872.JAGC01000003_gene3276
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Metallo-peptidase family M12B Reprolysin-like
EggNOG OGs1PHGX@1224,2MEPR@213115,2X1BB@28221,437VV@68525,COG3291@1,COG3291@2
COG Functional cat.S
Best tax levelDesulfovibrionales
Best eggNOG OGNA|NA|NA
Exons2
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930296.522654-CDS-H-paniculata_contig42638:129..2351622930296.522654-CDS-H-paniculata_contig42638:129..235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42638 130..235 -
1691481230.1786497-CDS-H-paniculata_contig42638:129..2351691481230.1786497-CDS-H-paniculata_contig42638:129..235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42638 130..235 -
1622930296.5360212-CDS-H-paniculata_contig42638:641..7691622930296.5360212-CDS-H-paniculata_contig42638:641..769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42638 642..769 -
1691481230.1944003-CDS-H-paniculata_contig42638:641..7691691481230.1944003-CDS-H-paniculata_contig42638:641..769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42638 642..769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42638.10900.1prot_H-paniculata_contig42638.10900.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42638 130..769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42638.10900.1

>prot_H-paniculata_contig42638.10900.1 ID=prot_H-paniculata_contig42638.10900.1|Name=mRNA_H-paniculata_contig42638.10900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
SCLDNRSHSHAFGHNLGCYLNRENTSVDKPYEHGYRSCDTQLPFSTIMSV
KCSSGQAPRINFYSNPEATWRGLPTGTA
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mRNA from alignment at H-paniculata_contig42638:130..769-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42638.10900.1 ID=mRNA_H-paniculata_contig42638.10900.1|Name=mRNA_H-paniculata_contig42638.10900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=640bp|location=Sequence derived from alignment at H-paniculata_contig42638:130..769- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGTGCTTGGACAACCGCTCGCACTCCCACGCGTTCGGCCACAACCTGGG CTGCTACTTGAACAGGGAAAACACGAGTGTCGACAAGCCTTACGAGCATG GCTACCGGAGTTGCGACACGCAACTGCCGTGAGTTTATTGATTGGGGGGT TGACTTCACGAGAACGGTTATGGTGTAGCCTAATCAAATGTTCTTGTCAC CGTCCGTTAGGGTTACATGACTGCAGGCCAAAACCATCAATCTAGACTGT CTTGTAGTCGGAATCCATGCAGAAGCTGAGAGAGGGAGAGAAAGCGTTTC GGTGGCTAGGTGGCTATTGTACGGATAAGATCGGTTAGCGCTGGATATAA CACGTATAATGACGAGCAACAAATCAATGAGGTTAAGGTTTTATTGTTTT GTCATGCTTCAGCAAGCGTCAAACATAGGTTGCCTGGCAGTAAGCGATCT ACTTTTGGATAGCGACTCAGTGTTTTGTCGTTTCTTACTTTTGGTCTACT GTATGATGTTGCATTGCTCCCAACGGATTATCAGGTTCAGCACCATCATG AGCGTCAAATGCTCGTCTGGCCAAGCCCCAAGGATAAACTTCTACTCTAA CCCCGAGGCGACCTGGAGAGGCCTTCCCACCGGTACTGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig42638:130..769-

>mRNA_H-paniculata_contig42638.10900.1 ID=mRNA_H-paniculata_contig42638.10900.1|Name=mRNA_H-paniculata_contig42638.10900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig42638:130..769- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGTGCTTGGACAACCGCTCGCACTCCCACGCGTTCGGCCACAACCTGGG
CTGCTACTTGAACAGGGAAAACACGAGTGTCGACAAGCCTTACGAGCATG
GCTACCGGAGTTGCGACACGCAACTGCCTCGTGCTTGGACAACCGCTCGC
ACTCCCACGCGTTCGGCCACAACCTGGGCTGCTACTTGAACAGGGAAAAC
ACGAGTGTCGACAAGCCTTACGAGCATGGCTACCGGAGTTGCGACACGCA
ACTGCCGTTCAGCACCATCATGAGCGTCAAATGCTCGTCTGGCCAAGCCC
CAAGGATAAACTTCTACTCTAACCCCGAGGCGACCTGGAGAGGCCTTCCC
ACCGGTACTGCCGTTCAGCACCATCATGAGCGTCAAATGCTCGTCTGGCC
AAGCCCCAAGGATAAACTTCTACTCTAACCCCGAGGCGACCTGGAGAGGC
CTTCCCACCGGTACTGCC
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