mRNA_H-paniculata_contig42635.10899.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42635.10899.1
Unique NamemRNA_H-paniculata_contig42635.10899.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42635.10899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42635contigH-paniculata_contig42635:1218..1535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930296.4578764-CDS-H-paniculata_contig42635:1217..15321622930296.4578764-CDS-H-paniculata_contig42635:1217..1532Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42635 1218..1532 -
1691481230.1545212-CDS-H-paniculata_contig42635:1217..15321691481230.1545212-CDS-H-paniculata_contig42635:1217..1532Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42635 1218..1532 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930296.4707446-UTR-H-paniculata_contig42635:1532..15351622930296.4707446-UTR-H-paniculata_contig42635:1532..1535Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42635 1533..1535 -
1691481230.1649594-UTR-H-paniculata_contig42635:1532..15351691481230.1649594-UTR-H-paniculata_contig42635:1532..1535Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42635 1533..1535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42635.10899.1prot_H-paniculata_contig42635.10899.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42635 1218..1532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42635.10899.1

>prot_H-paniculata_contig42635.10899.1 ID=prot_H-paniculata_contig42635.10899.1|Name=mRNA_H-paniculata_contig42635.10899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MGEGISEERLTNIVLEGLTDDYEQIKYNAERDPDFSINEIEVTMRNMFAN
CVAREGSSRKSRGRESAMVATTSASKSVKFKGKCHSCGKVGHVLRDCRSK
TKTNN
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mRNA from alignment at H-paniculata_contig42635:1218..1535-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42635.10899.1 ID=mRNA_H-paniculata_contig42635.10899.1|Name=mRNA_H-paniculata_contig42635.10899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at H-paniculata_contig42635:1218..1535- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACATGGGGGAAGGCATTTCTGAAGAGCGATTGACAAATATTGTTCTGGA
AGGTCTGACTGATGACTACGAACAAATAAAATATAATGCGGAGCGTGACC
CTGATTTTAGCATCAATGAAATTGAGGTCACAATGCGCAATATGTTTGCC
AATTGTGTAGCACGAGAGGGTTCTTCACGTAAATCTAGAGGACGTGAATC
TGCCATGGTGGCAACAACATCAGCATCAAAATCAGTAAAATTCAAGGGCA
AGTGCCACTCCTGCGGCAAAGTTGGTCATGTTCTGCGTGATTGTCGTTCA
AAGACAAAAACAAATAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig42635:1218..1535-

>mRNA_H-paniculata_contig42635.10899.1 ID=mRNA_H-paniculata_contig42635.10899.1|Name=mRNA_H-paniculata_contig42635.10899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig42635:1218..1535- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGAAGGCATTTCTGAAGAGCGATTGACAAATATTGTTCTGGAAGG
TCTGACTGATGACTACGAACAAATAAAATATAATGCGGAGCGTGACCCTG
ATTTTAGCATCAATGAAATTGAGGTCACAATGCGCAATATGTTTGCCAAT
TGTGTAGCACGAGAGGGTTCTTCACGTAAATCTAGAGGACGTGAATCTGC
CATGGTGGCAACAACATCAGCATCAAAATCAGTAAAATTCAAGGGCAAGT
GCCACTCCTGCGGCAAAGTTGGTCATGTTCTGCGTGATTGTCGTTCAAAG
ACAAAAACAAATAACATGGGGGAAGGCATTTCTGAAGAGCGATTGACAAA
TATTGTTCTGGAAGGTCTGACTGATGACTACGAACAAATAAAATATAATG
CGGAGCGTGACCCTGATTTTAGCATCAATGAAATTGAGGTCACAATGCGC
AATATGTTTGCCAATTGTGTAGCACGAGAGGGTTCTTCACGTAAATCTAG
AGGACGTGAATCTGCCATGGTGGCAACAACATCAGCATCAAAATCAGTAA
AATTCAAGGGCAAGTGCCACTCCTGCGGCAAAGTTGGTCATGTTCTGCGT
GATTGTCGTTCAAAGACAAAAACAAATAAC
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