mRNA_H-paniculata_contig42628.10897.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42628.10897.1
Unique NamemRNA_H-paniculata_contig42628.10897.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig42628.10897.1 vs. uniprot
Match: A0A6H5LBI9_9PHAE (PLCXc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LBI9_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 8.310e-22
Identity = 47/76 (61.84%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    7 HNPIVGPWASTQKLEIDQQLKAGVRVLDLRCGYVGPDVKE---VKDGVAIVHDIHRTSNSLRDVCMTVKDFVKNHP 225
            HNP+V PWA TQ L +  QLKAGVRVLDLRCGYVG + ++   V+DG+A+VHD HRTS SLR     VK FV+ HP
Sbjct:  268 HNPVVSPWAKTQNLGVLAQLKAGVRVLDLRCGYVGREAQKNDRVQDGIAVVHDKHRTSLSLRKALECVKGFVQAHP 343
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42628.10897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LBI9_9PHAE8.310e-2261.84PLCXc domain-containing protein n=2 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42628contigH-paniculata_contig42628:1152..1376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue8.5e-18
Seed eggNOG ortholog2880.D8LR29
KEGG rclassRC00017,RC00425
KEGG koko:K01771,ko:K06038
KEGG ReactionR03332
KEGG Pathwayko00562,map00562
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.phosphoric diester hydrolase activity
EggNOG OGsKOG4306@1,KOG4306@2759
EC4.6.1.13,4.6.1.14
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930296.2542965-CDS-H-paniculata_contig42628:1151..13761622930296.2542965-CDS-H-paniculata_contig42628:1151..1376Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42628 1152..1376 -
1691481230.0534692-CDS-H-paniculata_contig42628:1151..13761691481230.0534692-CDS-H-paniculata_contig42628:1151..1376Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42628 1152..1376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42628.10897.1prot_H-paniculata_contig42628.10897.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42628 1152..1376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42628.10897.1

>prot_H-paniculata_contig42628.10897.1 ID=prot_H-paniculata_contig42628.10897.1|Name=mRNA_H-paniculata_contig42628.10897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
QQHNPIVGPWASTQKLEIDQQLKAGVRVLDLRCGYVGPDVKEVKDGVAIV
HDIHRTSNSLRDVCMTVKDFVKNHP
back to top

mRNA from alignment at H-paniculata_contig42628:1152..1376-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42628.10897.1 ID=mRNA_H-paniculata_contig42628.10897.1|Name=mRNA_H-paniculata_contig42628.10897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=225bp|location=Sequence derived from alignment at H-paniculata_contig42628:1152..1376- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACAGCACAACCCTATAGTTGGCCCGTGGGCTTCGACTCAGAAACTTGA
GATCGACCAGCAGCTCAAGGCCGGTGTGCGCGTGCTTGATCTTCGCTGCG
GCTACGTCGGCCCTGACGTTAAAGAGGTAAAGGATGGGGTGGCGATCGTG
CACGATATCCACCGCACCTCCAACAGCCTACGGGACGTCTGCATGACGGT
CAAGGACTTCGTCAAGAACCACCCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig42628:1152..1376-

>mRNA_H-paniculata_contig42628.10897.1 ID=mRNA_H-paniculata_contig42628.10897.1|Name=mRNA_H-paniculata_contig42628.10897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig42628:1152..1376- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACAGCACAACCCTATAGTTGGCCCGTGGGCTTCGACTCAGAAACTTGA
GATCGACCAGCAGCTCAAGGCCGGTGTGCGCGTGCTTGATCTTCGCTGCG
GCTACGTCGGCCCTGACGTTAAAGAGGTAAAGGATGGGGTGGCGATCGTG
CACGATATCCACCGCACCTCCAACAGCCTACGGGACGTCTGCATGACGGT
CAAGGACTTCGTCAAGAACCACCCCCAACAGCACAACCCTATAGTTGGCC
CGTGGGCTTCGACTCAGAAACTTGAGATCGACCAGCAGCTCAAGGCCGGT
GTGCGCGTGCTTGATCTTCGCTGCGGCTACGTCGGCCCTGACGTTAAAGA
GGTAAAGGATGGGGTGGCGATCGTGCACGATATCCACCGCACCTCCAACA
GCCTACGGGACGTCTGCATGACGGTCAAGGACTTCGTCAAGAACCACCCC
back to top