mRNA_H-paniculata_contig42617.10894.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42617.10894.1
Unique NamemRNA_H-paniculata_contig42617.10894.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42617.10894.1 vs. uniprot
Match: A0A0J7K416_LASNI (Lectin receptor kinase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K416_LASNI)

HSP 1 Score: 104 bits (260), Expect = 2.330e-24
Identity = 49/127 (38.58%), Postives = 79/127 (62.20%), Query Frame = 1
Query:    7 PVRFSDIKKLTHKRLWHEAVRVEFEGLERLKAWTYVDSVRKGSSIVSARWVFAWKIDQQGNVRKAKARIVARGFSQQHHVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFIRANLDFEV 387
            PV + +  K      W EA+  E + +E+   WT V ++ KG   +SA+W+F  K+D++GNV + KAR+VARG+SQ+  +D+ E FAP V   +V+ ++A A  N + + Q DVK AF+  +L+ E+
Sbjct:  174 PVSYEEAIKGPEGEKWKEAINEELDAMEKNSTWTVVKNLPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQREGIDYEETFAPVVRYETVRTLLAEAAMNKYEIGQFDVKTAFLNGDLEEEI 300          
BLAST of mRNA_H-paniculata_contig42617.10894.1 vs. uniprot
Match: A0A5A7SSH2_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7SSH2_CUCME)

HSP 1 Score: 102 bits (255), Expect = 7.070e-24
Identity = 46/127 (36.22%), Postives = 79/127 (62.20%), Query Frame = 1
Query:    7 PVRFSDIKKLTHKRLWHEAVRVEFEGLERLKAWTYVDSVRKGSSIVSARWVFAWKIDQQGNVRKAKARIVARGFSQQHHVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFIRANLDFEV 387
            P+ F D+        W  A+  E + +E+ K WT ++ +  G+  +  +WV+  K ++ G V K KAR+VA+G+SQQH +D+ +VFAP     +++M++A+A + DW ++QLDVK AF+   L+ +V
Sbjct:  112 PICFEDV---VQNENWRLAMDNEIKSIEKNKTWTLIE-LPSGAKRIGVKWVYKTKYNEHGKVDKNKARLVAKGYSQQHEIDYTKVFAPVARMDTIRMIVALAAQKDWKIFQLDVKSAFLHGELNEDV 234          
BLAST of mRNA_H-paniculata_contig42617.10894.1 vs. uniprot
Match: A0A5E4G2P8_PRUDU (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G2P8_PRUDU)

HSP 1 Score: 101 bits (252), Expect = 9.590e-24
Identity = 45/112 (40.18%), Postives = 73/112 (65.18%), Query Frame = 1
Query:   52 WHEAVRVEFEGLERLKAWTYVDSVRKGSSIVSARWVFAWKIDQQGNVRKAKARIVARGFSQQHHVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFIRANLDFEV 387
            W EA+  E + +E+ + W   D + KG   +  +WVF  K++++G V K KAR+VA+G+ Q+H +D+ EVFAP     ++++VI++A +N W ++QLDVK  F+  NL  EV
Sbjct:    3 WREAMDNEIKSIEKNQTWELTD-LPKGKQTIGVKWVFRTKLNKKGEVDKHKARLVAKGYKQKHGIDYKEVFAPVARHDTIRLVISLAAQNSWQIFQLDVKSEFLHGNLQEEV 113          
BLAST of mRNA_H-paniculata_contig42617.10894.1 vs. uniprot
Match: A0A151SRC1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SRC1_CAJCA)

HSP 1 Score: 102 bits (253), Expect = 1.130e-23
Identity = 46/112 (41.07%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   52 WHEAVRVEFEGLERLKAWTYVDSVRKGSSIVSARWVFAWKIDQQGNVRKAKARIVARGFSQQHHVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFIRANLDFEV 387
            W EA+ +E + +ER K W   D+  KG + +  +WVF  K++++G+V K KAR+V +G+SQQ+ VD+ EVFAP     +V++++A+A ++ W +++LDVK AF+   L  EV
Sbjct:  185 WREAMNMEIQAIERNKTWELTDAP-KGVTPIGVKWVFKTKLNERGHVEKHKARLVEKGYSQQYGVDYTEVFAPVARLDTVRVLLALAAQHRWEVFELDVKSAFLHGELKEEV 295          
BLAST of mRNA_H-paniculata_contig42617.10894.1 vs. uniprot
Match: A0A0J7KM48_LASNI (Integrase catalytic domain-containing protein n=2 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KM48_LASNI)

HSP 1 Score: 104 bits (260), Expect = 1.400e-23
Identity = 49/127 (38.58%), Postives = 79/127 (62.20%), Query Frame = 1
Query:    7 PVRFSDIKKLTHKRLWHEAVRVEFEGLERLKAWTYVDSVRKGSSIVSARWVFAWKIDQQGNVRKAKARIVARGFSQQHHVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFIRANLDFEV 387
            PV + +  K      W EA+  E + +E+   WT V ++ KG   +SA+W+F  K+D++GNV + KAR+VARG+SQ+  +D+ E FAP V   +V+ ++A A  N + + Q DVK AF+  +L+ E+
Sbjct:  549 PVSYEEAIKGPEGEKWKEAINEELDAMEKNSTWTVVKNLPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQREGIDYEETFAPVVRYETVRTLLAEAAMNKYEIGQFDVKTAFLNGDLEEEI 675          
BLAST of mRNA_H-paniculata_contig42617.10894.1 vs. uniprot
Match: A0A4Y1RBF6_PRUDU (ADP glucose pyrophosphorylase large subunit 1 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RBF6_PRUDU)

HSP 1 Score: 104 bits (260), Expect = 1.440e-23
Identity = 48/127 (37.80%), Postives = 81/127 (63.78%), Query Frame = 1
Query:    7 PVRFSDIKKLTHKRLWHEAVRVEFEGLERLKAWTYVDSVRKGSSIVSARWVFAWKIDQQGNVRKAKARIVARGFSQQHHVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFIRANLDFEV 387
            P+ +++  K   +  W EA+  E + +E+ + W   D + KG   +  +WVF  K++++G V K KAR+VA+G+ Q+H +D+ EVFAP     ++++VI++A +N W ++QLDVK AF+  NL  EV
Sbjct:  404 PITYTEAVK---EEKWREAMDNEIKSIEKNQTWELTD-LPKGKQTIGVKWVFRTKLNEKGEVDKHKARLVAKGYKQKHGIDYKEVFAPVARHDTIRLVISLAAQNSWQIFQLDVKSAFLHGNLQEEV 526          
BLAST of mRNA_H-paniculata_contig42617.10894.1 vs. uniprot
Match: A0A4Y1R4M3_PRUDU (ADP glucose pyrophosphorylase large subunit 1 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R4M3_PRUDU)

HSP 1 Score: 104 bits (260), Expect = 1.480e-23
Identity = 48/127 (37.80%), Postives = 81/127 (63.78%), Query Frame = 1
Query:    7 PVRFSDIKKLTHKRLWHEAVRVEFEGLERLKAWTYVDSVRKGSSIVSARWVFAWKIDQQGNVRKAKARIVARGFSQQHHVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFIRANLDFEV 387
            P+ +++  K   +  W EA+  E + +E+ + W   D + KG   +  +WVF  K++++G V K KAR+VA+G+ Q+H +D+ EVFAP     ++++VI++A +N W ++QLDVK AF+  NL  EV
Sbjct:  846 PITYTEAVK---EEKWREAMDNEIKSIEKNQTWELTD-LPKGKQTIGVKWVFRTKLNEKGEVDKHKARLVAKGYKQKHGIDYKEVFAPVARHDTIRLVISLAAQNSWQIFQLDVKSAFLHGNLQEEV 968          
BLAST of mRNA_H-paniculata_contig42617.10894.1 vs. uniprot
Match: A0A0L9TUK8_PHAAN (Uncharacterized protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9TUK8_PHAAN)

HSP 1 Score: 103 bits (258), Expect = 2.740e-23
Identity = 47/120 (39.17%), Postives = 77/120 (64.17%), Query Frame = 1
Query:   28 KKLTHKRLWHEAVRVEFEGLERLKAWTYVDSVRKGSSIVSARWVFAWKIDQQGNVRKAKARIVARGFSQQHHVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFIRANLDFEV 387
            K+ +    W EA+  E + +E+ K W   D+   G + +  +WVF  K+++ GN+ K KAR+VA+G+SQQ+ VD+ EVFAP     +V++++A+A ++ W ++QLDVK AF+   L  EV
Sbjct:  840 KEASQSIKWREAMNAEIQAIEKNKTWELTDAPT-GITPIGVKWVFKTKLNEHGNIEKHKARLVAKGYSQQYGVDYTEVFAPVARLDTVRVLLAIAAQHKWEVFQLDVKSAFLHGELKEEV 958          
BLAST of mRNA_H-paniculata_contig42617.10894.1 vs. uniprot
Match: A0A5B7B5N1_DAVIN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7B5N1_DAVIN)

HSP 1 Score: 97.1 bits (240), Expect = 3.890e-23
Identity = 47/125 (37.60%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   16 FSDIKKLTHKRL-----WHEAVRVEFEGLERLKAWTYVDSVRKGSSIVSARWVFAWKIDQQGNVRKAKARIVARGFSQQHHVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFIRANL 375
            FSD   +T K       W +A+  E E +ER   W   + + KG + +  +WV+  K+ + G V K KAR+VA+G+ Q+  VD+ EVFAP     ++++VIA+A +N W ++Q+DVK AF++ +L
Sbjct:   28 FSDCDPVTFKEAVKESKWRKAMDTEIEAIERNNTWELTE-LPKGQNTIGVKWVYKTKLKKTGEVDKYKARLVAKGYKQEFGVDYKEVFAPVARHDTIRLVIALAAQNSWLIFQMDVKSAFLQGDL 151          
BLAST of mRNA_H-paniculata_contig42617.10894.1 vs. uniprot
Match: A0A1J3E602_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3E602_NOCCA)

HSP 1 Score: 100 bits (250), Expect = 4.720e-23
Identity = 50/124 (40.32%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    7 PVRFSDIKKLTHKRLWHEAVRVEFEGLERLKAWTYVDSVRKGSSIVSARWVFAWKIDQQGNVRKAKARIVARGFSQQHHVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFIRANLD 378
            P  + +  +LT   +W EAV  E + +ER   W   D + KG   V+++WVF  K  + G + + KAR+VARGF+Q +  D+L+ FAP     +V++V+A+A   DW MWQ+DVK AF++ +LD
Sbjct:  205 PQSYEEAMELT---VWVEAVEDETQAMERNHTWDEAD-LPKGKRAVTSKWVFTIKYLRTGEIERHKARLVARGFTQTYGQDYLDTFAPVAKLHTVRVVLALAANLDWDMWQMDVKNAFLQGDLD 324          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42617.10894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J7K416_LASNI2.330e-2438.58Lectin receptor kinase n=1 Tax=Lasius niger TaxID=... [more]
A0A5A7SSH2_CUCME7.070e-2436.22Retrovirus-related Pol polyprotein from transposon... [more]
A0A5E4G2P8_PRUDU9.590e-2440.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151SRC1_CAJCA1.130e-2341.07Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7KM48_LASNI1.400e-2338.58Integrase catalytic domain-containing protein n=2 ... [more]
A0A4Y1RBF6_PRUDU1.440e-2337.80ADP glucose pyrophosphorylase large subunit 1 n=1 ... [more]
A0A4Y1R4M3_PRUDU1.480e-2337.80ADP glucose pyrophosphorylase large subunit 1 n=1 ... [more]
A0A0L9TUK8_PHAAN2.740e-2339.17Uncharacterized protein n=1 Tax=Phaseolus angulari... [more]
A0A5B7B5N1_DAVIN3.890e-2337.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1J3E602_NOCCA4.720e-2340.32Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42617contigH-paniculata_contig42617:2..388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score99.4
Seed ortholog evalue1.3e-18
Seed eggNOG ortholog225117.XP_009372975.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37W11@33090,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Exons1
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930295.8384879-CDS-H-paniculata_contig42617:1..3881622930295.8384879-CDS-H-paniculata_contig42617:1..388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42617 2..388 -
1691481229.894925-CDS-H-paniculata_contig42617:1..3881691481229.894925-CDS-H-paniculata_contig42617:1..388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42617 2..388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42617.10894.1prot_H-paniculata_contig42617.10894.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42617 2..388 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42617.10894.1

>prot_H-paniculata_contig42617.10894.1 ID=prot_H-paniculata_contig42617.10894.1|Name=mRNA_H-paniculata_contig42617.10894.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
EPPVRFSDIKKLTHKRLWHEAVRVEFEGLERLKAWTYVDSVRKGSSIVSA
RWVFAWKIDQQGNVRKAKARIVARGFSQQHHVDFLEVFAPTVAASSVKMV
IAVAVENDWGMWQLDVKQAFIRANLDFEV
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mRNA from alignment at H-paniculata_contig42617:2..388-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42617.10894.1 ID=mRNA_H-paniculata_contig42617.10894.1|Name=mRNA_H-paniculata_contig42617.10894.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=387bp|location=Sequence derived from alignment at H-paniculata_contig42617:2..388- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCCCCTGTTCGTTTTTCAGACATCAAGAAGCTGACACATAAAAGGTT GTGGCATGAGGCAGTCAGAGTAGAGTTTGAGGGCTTGGAAAGGCTCAAAG CTTGGACTTATGTAGACAGTGTGCGGAAAGGTTCCAGTATTGTCAGTGCG AGATGGGTATTTGCATGGAAAATTGATCAGCAGGGGAACGTTAGAAAGGC AAAGGCAAGGATTGTTGCTCGAGGGTTTAGCCAGCAACACCACGTTGATT TTCTCGAAGTGTTTGCTCCTACGGTAGCCGCTTCCAGTGTGAAGATGGTA ATTGCTGTTGCTGTCGAAAACGACTGGGGAATGTGGCAACTTGATGTAAA ACAGGCTTTTATTCGGGCGAATTTAGATTTCGAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig42617:2..388-

>mRNA_H-paniculata_contig42617.10894.1 ID=mRNA_H-paniculata_contig42617.10894.1|Name=mRNA_H-paniculata_contig42617.10894.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig42617:2..388- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCCCCTGTTCGTTTTTCAGACATCAAGAAGCTGACACATAAAAGGTT
GTGGCATGAGGCAGTCAGAGTAGAGTTTGAGGGCTTGGAAAGGCTCAAAG
CTTGGACTTATGTAGACAGTGTGCGGAAAGGTTCCAGTATTGTCAGTGCG
AGATGGGTATTTGCATGGAAAATTGATCAGCAGGGGAACGTTAGAAAGGC
AAAGGCAAGGATTGTTGCTCGAGGGTTTAGCCAGCAACACCACGTTGATT
TTCTCGAAGTGTTTGCTCCTACGGTAGCCGCTTCCAGTGTGAAGATGGTA
ATTGCTGTTGCTGTCGAAAACGACTGGGGAATGTGGCAACTTGATGTAAA
ACAGGCTTTTATTCGGGCGAATTTAGATTTCGAGGTGGAGCCCCCTGTTC
GTTTTTCAGACATCAAGAAGCTGACACATAAAAGGTTGTGGCATGAGGCA
GTCAGAGTAGAGTTTGAGGGCTTGGAAAGGCTCAAAGCTTGGACTTATGT
AGACAGTGTGCGGAAAGGTTCCAGTATTGTCAGTGCGAGATGGGTATTTG
CATGGAAAATTGATCAGCAGGGGAACGTTAGAAAGGCAAAGGCAAGGATT
GTTGCTCGAGGGTTTAGCCAGCAACACCACGTTGATTTTCTCGAAGTGTT
TGCTCCTACGGTAGCCGCTTCCAGTGTGAAGATGGTAATTGCTGTTGCTG
TCGAAAACGACTGGGGAATGTGGCAACTTGATGTAAAACAGGCTTTTATT
CGGGCGAATTTAGATTTCGAGGTG
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