mRNA_H-paniculata_contig4261.10891.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4261.10891.1
Unique NamemRNA_H-paniculata_contig4261.10891.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4261.10891.1 vs. uniprot
Match: A0A6H5KD69_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD69_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.330e-17
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 3 
Query:   21 EIGAITLFGNLMDYHGALQRYSLQIKGRYIEVAPALRPDYYAAVINR 161
            E+GAITLFG LMDYHGALQRYSLQIKGRYIEVAPA+R DYY+AVI R
Sbjct:  307 EVGAITLFGTLMDYHGALQRYSLQIKGRYIEVAPAIRADYYSAVIKR 353
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BLAST of mRNA_H-paniculata_contig4261.10891.1 vs. uniprot
Match: A0A835YKV5_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKV5_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.140e-14
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 3 
Query:   15 EGEIGAITLFGNLMDYHGALQRYSLQIKGRYIEVAPALRPDYYAAVINR 161
            E  + A+ LFGN+MDYHGALQRYSLQ+ GRY+EVAPALR DYYAA++ R
Sbjct:   93 EQTLDAVVLFGNMMDYHGALQRYSLQLLGRYVEVAPALRGDYYAAIMQR 141
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BLAST of mRNA_H-paniculata_contig4261.10891.1 vs. uniprot
Match: A0A836CJY6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJY6_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.270e-13
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 3 
Query:   24 IGAITLFGNLMDYHGALQRYSLQIKGRYIEVAPALRPDYYAAVINR 161
            + A+ LFGNLMDYHGALQRYSLQ+ GRY+ V PALR DYYAAV  R
Sbjct:   65 LDAVVLFGNLMDYHGALQRYSLQLLGRYVAVQPALRGDYYAAVSRR 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4261.10891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KD69_9PHAE1.330e-1787.23RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YKV5_9STRA1.140e-1471.43RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A836CJY6_9STRA2.270e-1373.91RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4261contigH-paniculata_contig4261:2359..3067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue3.4e-16
Seed eggNOG ortholog2880.D7G570
KEGG koko:K07088,ko:K12898,ko:K14947
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0008150,GO:0010468,GO:0019219,GO:0019222,GO:0031323,GO:0043484,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363
EggNOG free text desc.RNA binding
EggNOG OGsKOG4211@1,KOG4211@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons2
Model size375
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4261.10891.1prot_H-paniculata_contig4261.10891.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4261 2370..3067 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930295.483104-UTR-H-paniculata_contig4261:2358..23691622930295.483104-UTR-H-paniculata_contig4261:2358..2369Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4261 2359..2369 +
1691481229.718123-UTR-H-paniculata_contig4261:2358..23691691481229.718123-UTR-H-paniculata_contig4261:2358..2369Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4261 2359..2369 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930295.498476-CDS-H-paniculata_contig4261:2369..24711622930295.498476-CDS-H-paniculata_contig4261:2369..2471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4261 2370..2471 +
1691481229.7371285-CDS-H-paniculata_contig4261:2369..24711691481229.7371285-CDS-H-paniculata_contig4261:2369..2471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4261 2370..2471 +
1622930295.5124025-CDS-H-paniculata_contig4261:2806..30671622930295.5124025-CDS-H-paniculata_contig4261:2806..3067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4261 2807..3067 +
1691481229.750579-CDS-H-paniculata_contig4261:2806..30671691481229.750579-CDS-H-paniculata_contig4261:2806..3067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4261 2807..3067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4261.10891.1

>prot_H-paniculata_contig4261.10891.1 ID=prot_H-paniculata_contig4261.10891.1|Name=mRNA_H-paniculata_contig4261.10891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MEGEIGAITLFGNLMDYHGALQRYSLQIKGRYIEVAPALRPDYYAAVINR
PVVAGATATADAGGAATAASAGNTHQSGSVSVHNEPSGRRTESMPGAGVT
PKAQTQGSGSLATVPAGGTAG
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mRNA from alignment at H-paniculata_contig4261:2359..3067+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4261.10891.1 ID=mRNA_H-paniculata_contig4261.10891.1|Name=mRNA_H-paniculata_contig4261.10891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=709bp|location=Sequence derived from alignment at H-paniculata_contig4261:2359..3067+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGGCGTACGATGGAGGGCGAAATAGGGGCAATCACTCTTTTCGGGAAC
CTGATGGACTACCACGGGGCGCTGCAGCGGTATTCCCTGCAGATCAAGGG
GCGGTACATTGAGGTGTGACTTACAATGACCTGTTGTCCAGCTTTTTAGT
TACTGTAATAGCCTGCGGCAACGTCGATCTGCCACCAGTTACGAACTGCG
TGTGCAAATTCGGGGAAAACAAAATTACATTGTGACCATGTGCACCTGTC
CAACTAGGGCTGAGTGTCCATCAAACTCCCATACAATACCTTTTTGTGAC
CCCTAAATTCAATTTATAACGAAAAAGTGTCTCACAAGTTGTCACCACCT
CTGCATACAAGTACAATTTTTTCCCCACAGAAGCCTTCTCAAGCGGTGCC
CTGTTGTCTTGACTTCTTTATTTCATGTCCACATCATGCACAATCCAGGT
CGCGCCAGCGCTGCGGCCAGACTACTACGCCGCCGTGATAAATCGCCCGG
TGGTAGCGGGAGCGACAGCGACAGCCGACGCGGGAGGGGCAGCGACGGCA
GCCAGCGCAGGAAATACCCACCAATCGGGTTCAGTCTCGGTTCACAACGA
ACCATCGGGACGTCGGACGGAGTCAATGCCGGGGGCAGGGGTTACGCCAA
AGGCTCAGACCCAAGGGTCAGGGTCGTTAGCGACCGTGCCGGCGGGGGGC
ACCGCGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4261:2359..3067+

>mRNA_H-paniculata_contig4261.10891.1 ID=mRNA_H-paniculata_contig4261.10891.1|Name=mRNA_H-paniculata_contig4261.10891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig4261:2359..3067+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGGCGAAATAGGGGCAATCACTCTTTTCGGGAACCTGATGGACTA
CCACGGGGCGCTGCAGCGGTATTCCCTGCAGATCAAGGGGCGGTACATTG
AGATGGAGGGCGAAATAGGGGCAATCACTCTTTTCGGGAACCTGATGGAC
TACCACGGGGCGCTGCAGCGGTATTCCCTGCAGATCAAGGGGCGGTACAT
TGAGGTCGCGCCAGCGCTGCGGCCAGACTACTACGCCGCCGTGATAAATC
GCCCGGTGGTAGCGGGAGCGACAGCGACAGCCGACGCGGGAGGGGCAGCG
ACGGCAGCCAGCGCAGGAAATACCCACCAATCGGGTTCAGTCTCGGTTCA
CAACGAACCATCGGGACGTCGGACGGAGTCAATGCCGGGGGCAGGGGTTA
CGCCAAAGGCTCAGACCCAAGGGTCAGGGTCGTTAGCGACCGTGCCGGCG
GGGGGCACCGCGGGAGTCGCGCCAGCGCTGCGGCCAGACTACTACGCCGC
CGTGATAAATCGCCCGGTGGTAGCGGGAGCGACAGCGACAGCCGACGCGG
GAGGGGCAGCGACGGCAGCCAGCGCAGGAAATACCCACCAATCGGGTTCA
GTCTCGGTTCACAACGAACCATCGGGACGTCGGACGGAGTCAATGCCGGG
GGCAGGGGTTACGCCAAAGGCTCAGACCCAAGGGTCAGGGTCGTTAGCGA
CCGTGCCGGCGGGGGGCACCGCGGGA
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