mRNA_H-paniculata_contig42608.10890.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42608.10890.1
Unique NamemRNA_H-paniculata_contig42608.10890.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Match: UPI001F0214A0 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F0214A0)

HSP 1 Score: 66.2 bits (160), Expect = 1.120e-9
Identity = 44/148 (29.73%), Postives = 70/148 (47.30%), Query Frame = 1
Query:    7 NQKKTKKDRRLCWVCGSSEHIARRCPKRHHDTNEGTVALLATIKGPKAMTAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDEISSEDYTPALPGTMCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLIST 450
            N    KK +  C  CG   H A  C     +  +G   ++ T +    + A+  +     NP     KE W  D+GAT H+ +   +   Y PA P     + N     +EG+G+++L+++      +V  LN V HVPE+R+NL+ST
Sbjct:  245 NYPNKKKFKGNCHNCGKIGHKAADCRAPKKEKKKGQANMVETNEDVDDLCAMLSECNLVGNP-----KEWW-IDSGATRHICAVREAFASYAPAGPDETIYMGNSATAKIEGYGKIMLKMTSG----KVVTLNNVCHVPEIRKNLVST 382          
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Match: UPI000905CD14 (uncharacterized protein LOC109226016 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000905CD14)

HSP 1 Score: 57.0 bits (136), Expect = 1.430e-6
Identity = 38/124 (30.65%), Postives = 63/124 (50.81%), Query Frame = 1
Query:   85 KRHHDTNEGTVALLATIKGPKAMTAVTDDRKTTDNPAVT--REKEHWNSDTGATDHMTSDEISSEDYTPALPGTMCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLIST 450
            KR   T E  +  L   +  KA      ++K+  N  +     +E W  D+GAT H+ +++     Y P  P     +AN     +EG G++VL+++     +++  LNKV HVPE+R+NL+ T
Sbjct:  174 KRKEMTLEDLIVCLRIEEDNKAA-----EKKSRGNSTIMVGNARECW-IDSGATRHVCANKEFFTSYAPGGPNNTVFMANSATAKIEGTGKIVLKMTS----VKIVTLNKVLHVPEMRKNLVPT 287          
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Match: A0A284S1T9_ARMOS (Integrase catalytic domain-containing protein n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284S1T9_ARMOS)

HSP 1 Score: 55.8 bits (133), Expect = 4.060e-6
Identity = 45/130 (34.62%), Postives = 59/130 (45.38%), Query Frame = 1
Query:   85 KRHHDTNEGTVALLATIKGPKAMTAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDEISSEDYTPALPGTMCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLISTRRATDTSG 474
            +R   T +   A  A IK   A  A TD      +PA++    HWN+DTGA+ HMT        Y+P +      +A+ T +  EG G +VL     GE   V  L    HVP LR NL+S    T   G
Sbjct:  275 RRQKGTGKREAANSADIKEETASQASTDPS----SPAMS----HWNTDTGASRHMTPHRHWFNVYSPHIVPIR--LADNTVIYSEGIGTVVLEPEVEGEKSTVVELLDTLHVPALRNNLLSPYHLTREKG 394          
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Match: A0A438D407_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438D407_VITVI)

HSP 1 Score: 55.8 bits (133), Expect = 4.460e-6
Identity = 45/144 (31.25%), Postives = 70/144 (48.61%), Query Frame = 1
Query:   40 CWVCGSSEHIARRC--PKRHHDTNEGTVALLATIKGPKAMTAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDEISSEDYTPALPGTMCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLISTRRATD 465
            CW CG + H  R+C  PK+ ++ +                 AVT++ +     AV    + W  D+GA+ H TS     ++Y     G +  +A+G+ + V G G +  R+S P     V +L KV H+P+LRRNLIS  +  D
Sbjct:  166 CWNCGKTGHFKRQCKSPKKKNEDDSAN--------------AVTEEVQDALLLAVDSPLDDWVLDSGASFHTTSHREIIQNYVAGDFGKV-YLADGSALDVVGLGDV--RISLPNG--SVWLLEKVRHIPDLRRNLISVGQLDD 290          
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Match: A0A438H787_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438H787_VITVI)

HSP 1 Score: 55.8 bits (133), Expect = 4.480e-6
Identity = 45/144 (31.25%), Postives = 70/144 (48.61%), Query Frame = 1
Query:   40 CWVCGSSEHIARRC--PKRHHDTNEGTVALLATIKGPKAMTAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDEISSEDYTPALPGTMCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLISTRRATD 465
            CW CG + H  R+C  PK+ ++ +                 AVT++ +     AV    + W  D+GA+ H TS     ++Y     G +  +A+G+ + V G G +  R+S P     V +L KV H+P+LRRNLIS  +  D
Sbjct:  239 CWNCGKTGHFKRQCKSPKKKNEDDSAN--------------AVTEEVQDALLLAVDSPLDDWVLDSGASFHTTSHREIIQNYVAGDFGKV-YLADGSALDVVGLGDV--RISLPNG--SVWLLEKVQHIPDLRRNLISVGQLDD 363          
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Match: A0A438DW21_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DW21_VITVI)

HSP 1 Score: 55.5 bits (132), Expect = 5.840e-6
Identity = 44/144 (30.56%), Postives = 69/144 (47.92%), Query Frame = 1
Query:   40 CWVCGSSEHIARRC--PKRHHDTNEGTVALLATIKGPKAMTAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDEISSEDYTPALPGTMCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLISTRRATD 465
            CW CG + H  R+C  PK+ ++ +                 A+T++       AV    + W  D+GA+ H T      ++Y     G +  +A+G+ + V G G +  R+S P     V +L KV H+P+LRRNLIS R+  D
Sbjct:  239 CWNCGKTGHFKRQCKSPKKKNEDDSAN--------------AITEEVHDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYIAGDFGKV-YLADGSALDVVGLGDI--RISLPNG--SVWLLEKVRHIPDLRRNLISVRQLDD 363          
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Match: A0A438EZF0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EZF0_VITVI)

HSP 1 Score: 55.5 bits (132), Expect = 6.080e-6
Identity = 44/144 (30.56%), Postives = 70/144 (48.61%), Query Frame = 1
Query:   40 CWVCGSSEHIARRC--PKRHHDTNEGTVALLATIKGPKAMTAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDEISSEDYTPALPGTMCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLISTRRATD 465
            CW CG + H  R+C  PK+ +D ++ T A+   ++    +             AV    + W  D+GA+ H T      ++Y     G +  +A+G+ + V G G +  R+S P     V +L KV H+P+LRRNLIS  +  D
Sbjct:  239 CWNCGKTGHFKRQCKNPKKKND-DDSTNAVTEEVQDALLL-------------AVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKV-YLADGSALDVVGLGDV--RISLPNG--SVWLLEKVRHIPDLRRNLISVGQLDD 363          
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Match: A0A438KBI6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438KBI6_VITVI)

HSP 1 Score: 55.1 bits (131), Expect = 6.760e-6
Identity = 46/136 (33.82%), Postives = 66/136 (48.53%), Query Frame = 1
Query:   40 CWVCGSSEHIARRCPKRHHDTNEGTVALLATIKGPKAMTAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDEISSEDYTPALPGTMCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLIS 447
            CW CG + H  R+C K     NE   A + T K   A+  V D      +P      + W  D+GA+ H T      ++Y     G +  +A+G+ + V G G +  R+S P     V +L KV H+P+LRRNLIS
Sbjct:  193 CWNCGKTGHFKRQC-KSPKKKNEDDSANVVTEKVHDALLLVVD------SPL-----DDWVLDSGASFHTTPHREIIQNYVAGDFGKV-YLADGSTLDVVGIGDV--RISLPNR--SVWLLEKVRHIPDLRRNLIS 311          
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Match: A0A438GLU8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GLU8_VITVI)

HSP 1 Score: 55.1 bits (131), Expect = 8.090e-6
Identity = 45/144 (31.25%), Postives = 69/144 (47.92%), Query Frame = 1
Query:   40 CWVCGSSEHIARRC--PKRHHDTNEGTVALLATIKGPKAMTAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDEISSEDYTPALPGTMCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLISTRRATD 465
            CW CG + H  R+C  PK+ ++ +                 AVT++ + T   AV    + W  D GA+ H T      ++Y     G +  +A+G+ + V G G +  R+S P     V +L KV H+P+LRRNLIS  +  D
Sbjct:  239 CWNCGKTGHFKRQCKNPKKKNEDDSAN--------------AVTEEVQDTLLLAVDSPLDDWVLDLGASFHTTPHREIIQNYVAGDFGKV-YLADGSALDVVGLGDV--RISLPNG--SVWLLEKVRHIPDLRRNLISVGQLDD 363          
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Match: A0A438GDP4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GDP4_VITVI)

HSP 1 Score: 55.1 bits (131), Expect = 8.140e-6
Identity = 45/144 (31.25%), Postives = 69/144 (47.92%), Query Frame = 1
Query:   40 CWVCGSSEHIARRC--PKRHHDTNEGTVALLATIKGPKAMTAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDEISSEDYTPALPGTMCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLISTRRATD 465
            CW CG + H  R+C  PK+ ++ +                 AVT++ +     AV    + W  D+GA+ H T      ++Y     G +  +ANG+ + V G G +  R+S P     V +L KV H+P+LRRNLIS  +  D
Sbjct:  155 CWNCGKTCHFKRQCKSPKKKNEDDSAN--------------AVTEEVQDALFLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKV-YLANGSALDVVGLGDV--RISLPNG--SVWLLEKVRHIPDLRRNLISVGQLDD 279          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F0214A01.120e-929.73DDE-type integrase/transposase/recombinase n=1 Tax... [more]
UPI000905CD141.430e-630.65uncharacterized protein LOC109226016 n=1 Tax=Nicot... [more]
A0A284S1T9_ARMOS4.060e-634.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A438D407_VITVI4.460e-631.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A438H787_VITVI4.480e-631.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A438DW21_VITVI5.840e-630.56Retrovirus-related Pol polyprotein from transposon... [more]
A0A438EZF0_VITVI6.080e-630.56Retrovirus-related Pol polyprotein from transposon... [more]
A0A438KBI6_VITVI6.760e-633.82Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GLU8_VITVI8.090e-631.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GDP4_VITVI8.140e-631.25Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42608contigH-paniculata_contig42608:132..608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue2.2e-07
Seed eggNOG ortholog3750.XP_008338159.1
KEGG rclassRC00020,RC00793,RC02814,RC02821,RC02874
KEGG koko:K01738,ko:K10357,ko:K13034,ko:K20553
KEGG ReactionR00897,R02846,R03524,R03601,R04859
KEGG Pathwayko00270,ko00460,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04016,map00270,map00460,map00920,map01100,map01110,map01120,map01130,map01200,map01230,map04016
KEGG ModuleM00021
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.cysteine biosynthetic process from serine
EggNOG OGsCOG0031@1,COG2801@1,KOG0017@2759,KOG1252@2759
EC2.5.1.47,4.4.1.9
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03029,ko04131,ko04812
Exons1
Model size477
Cds size477
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930295.4396071-CDS-H-paniculata_contig42608:131..6081622930295.4396071-CDS-H-paniculata_contig42608:131..608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42608 132..608 -
1691481229.692807-CDS-H-paniculata_contig42608:131..6081691481229.692807-CDS-H-paniculata_contig42608:131..608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42608 132..608 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42608.10890.1prot_H-paniculata_contig42608.10890.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42608 132..608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42608.10890.1

>prot_H-paniculata_contig42608.10890.1 ID=prot_H-paniculata_contig42608.10890.1|Name=mRNA_H-paniculata_contig42608.10890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
GDNQKKTKKDRRLCWVCGSSEHIARRCPKRHHDTNEGTVALLATIKGPKA
MTAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDEISSEDYTPALPGT
MCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLIST
RRATDTSG*
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mRNA from alignment at H-paniculata_contig42608:132..608-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42608.10890.1 ID=mRNA_H-paniculata_contig42608.10890.1|Name=mRNA_H-paniculata_contig42608.10890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=477bp|location=Sequence derived from alignment at H-paniculata_contig42608:132..608- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGACAATCAAAAGAAAACGAAAAAGGATCGACGCCTGTGCTGGGTGTG CGGTAGCTCAGAGCACATCGCGAGACGGTGCCCGAAACGCCACCACGATA CCAACGAAGGAACAGTAGCACTCCTGGCTACCATAAAAGGACCCAAGGCA ATGACGGCCGTAACTGACGATCGCAAGACAACAGACAACCCTGCCGTGAC CAGAGAGAAGGAACACTGGAATTCAGACACCGGCGCGACAGACCACATGA CGTCGGATGAGATTTCGTCCGAGGACTACACTCCAGCGCTCCCGGGGACC ATGTGTGTAATCGCCAACGGGACATTCGTGCCTGTAGAGGGGTGGGGACG CCTTGTGCTTCGAGTAAGTCAACCCGGGGAAATATTGCGGGTACCAGTGT TAAACAAGGTTGCCCATGTACCCGAGCTTAGGCGCAATTTAATCTCCACA CGCCGAGCAACAGATACATCGGGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig42608:132..608-

>mRNA_H-paniculata_contig42608.10890.1 ID=mRNA_H-paniculata_contig42608.10890.1|Name=mRNA_H-paniculata_contig42608.10890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig42608:132..608- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGACAATCAAAAGAAAACGAAAAAGGATCGACGCCTGTGCTGGGTGTG
CGGTAGCTCAGAGCACATCGCGAGACGGTGCCCGAAACGCCACCACGATA
CCAACGAAGGAACAGTAGCACTCCTGGCTACCATAAAAGGACCCAAGGCA
ATGACGGCCGTAACTGACGATCGCAAGACAACAGACAACCCTGCCGTGAC
CAGAGAGAAGGAACACTGGAATTCAGACACCGGCGCGACAGACCACATGA
CGTCGGATGAGATTTCGTCCGAGGACTACACTCCAGCGCTCCCGGGGACC
ATGTGTGTAATCGCCAACGGGACATTCGTGCCTGTAGAGGGGTGGGGACG
CCTTGTGCTTCGAGTAAGTCAACCCGGGGAAATATTGCGGGTACCAGTGT
TAAACAAGGTTGCCCATGTACCCGAGCTTAGGCGCAATTTAATCTCCACA
CGCCGAGCAACAGATACATCGGGTTAAGGGGACAATCAAAAGAAAACGAA
AAAGGATCGACGCCTGTGCTGGGTGTGCGGTAGCTCAGAGCACATCGCGA
GACGGTGCCCGAAACGCCACCACGATACCAACGAAGGAACAGTAGCACTC
CTGGCTACCATAAAAGGACCCAAGGCAATGACGGCCGTAACTGACGATCG
CAAGACAACAGACAACCCTGCCGTGACCAGAGAGAAGGAACACTGGAATT
CAGACACCGGCGCGACAGACCACATGACGTCGGATGAGATTTCGTCCGAG
GACTACACTCCAGCGCTCCCGGGGACCATGTGTGTAATCGCCAACGGGAC
ATTCGTGCCTGTAGAGGGGTGGGGACGCCTTGTGCTTCGAGTAAGTCAAC
CCGGGGAAATATTGCGGGTACCAGTGTTAAACAAGGTTGCCCATGTACCC
GAGCTTAGGCGCAATTTAATCTCCACACGCCGAGCAACAGATACATCGGG
TTAA
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