mRNA_H-paniculata_contig42578.10880.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42578.10880.1
Unique NamemRNA_H-paniculata_contig42578.10880.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig42578.10880.1 vs. uniprot
Match: A0A6H5KV09_9PHAE (GH16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV09_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.850e-10
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 KAEPFLGVPQCLPGVIEAESFDVGGLGLGFGDTDPE 108
            +AEPFLG P CLPG I+AE++D GGLGLGFGD+ PE
Sbjct:  275 EAEPFLGAPLCLPGTIQAEAYDTGGLGLGFGDSYPE 310
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BLAST of mRNA_H-paniculata_contig42578.10880.1 vs. uniprot
Match: A0A2N1VUQ0_9BACT (Uncharacterized protein n=1 Tax=Ignavibacteriae bacterium HGW-Ignavibacteriae-2 TaxID=2013809 RepID=A0A2N1VUQ0_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 1.060e-5
Identity = 18/32 (56.25%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:   10 PFLGVPQCLPGVIEAESFDVGGLGLGFGDTDP 105
            P+LGVP  +PG+IEAE++D+GG G+ + D+DP
Sbjct:  376 PYLGVPISVPGLIEAENYDIGGQGIAYNDSDP 407
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BLAST of mRNA_H-paniculata_contig42578.10880.1 vs. uniprot
Match: A0A7Y4QP35_9BACT (Carbohydrate-binding protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7Y4QP35_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 1.440e-5
Identity = 19/31 (61.29%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:   10 PFLGVPQCLPGVIEAESFDVGGLGLGFGDTD 102
            PF G+PQ +PG+++AE+FD GG GL F DTD
Sbjct:  975 PFFGLPQTIPGIVQAENFDGGGEGLAFHDTD 1005
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42578.10880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KV09_9PHAE1.850e-1072.22GH16 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A2N1VUQ0_9BACT1.060e-556.25Uncharacterized protein n=1 Tax=Ignavibacteriae ba... [more]
A0A7Y4QP35_9BACT1.440e-561.29Carbohydrate-binding protein n=1 Tax=Verrucomicrob... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42578contigH-paniculata_contig42578:1134..1244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue6.7e-08
Seed eggNOG ortholog2880.D8LQ34
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Glycosyl hydrolases family 16
EggNOG OGs2S1W9@2759,COG2273@1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size111
Cds size111
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930293.818158-CDS-H-paniculata_contig42578:1133..12441622930293.818158-CDS-H-paniculata_contig42578:1133..1244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42578 1134..1244 -
1691481228.8651958-CDS-H-paniculata_contig42578:1133..12441691481228.8651958-CDS-H-paniculata_contig42578:1133..1244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42578 1134..1244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42578.10880.1prot_H-paniculata_contig42578.10880.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42578 1134..1244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42578.10880.1

>prot_H-paniculata_contig42578.10880.1 ID=prot_H-paniculata_contig42578.10880.1|Name=mRNA_H-paniculata_contig42578.10880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=37bp
KAEPFLGVPQCLPGVIEAESFDVGGLGLGFGDTDPE*
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mRNA from alignment at H-paniculata_contig42578:1134..1244-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42578.10880.1 ID=mRNA_H-paniculata_contig42578.10880.1|Name=mRNA_H-paniculata_contig42578.10880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=111bp|location=Sequence derived from alignment at H-paniculata_contig42578:1134..1244- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCGGAGCCTTTTCTAGGAGTACCGCAGTGCCTTCCAGGCGTAATCGA
GGCAGAAAGCTTCGATGTTGGGGGGCTAGGGCTTGGATTTGGAGACACTG
ACCCAGAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig42578:1134..1244-

>mRNA_H-paniculata_contig42578.10880.1 ID=mRNA_H-paniculata_contig42578.10880.1|Name=mRNA_H-paniculata_contig42578.10880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at H-paniculata_contig42578:1134..1244- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCGGAGCCTTTTCTAGGAGTACCGCAGTGCCTTCCAGGCGTAATCGA
GGCAGAAAGCTTCGATGTTGGGGGGCTAGGGCTTGGATTTGGAGACACTG
ACCCAGAGTGAAAGGCGGAGCCTTTTCTAGGAGTACCGCAGTGCCTTCCA
GGCGTAATCGAGGCAGAAAGCTTCGATGTTGGGGGGCTAGGGCTTGGATT
TGGAGACACTGACCCAGAGTGA
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