mRNA_H-paniculata_contig4257.10879.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4257.10879.1
Unique NamemRNA_H-paniculata_contig4257.10879.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4257.10879.1 vs. uniprot
Match: D7FL28_ECTSI (Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 3.600e-16
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 3 
Query:    6 VVCAWSNAEADEAEKKRKEAEIIKYKMQDHVVETEGAANKA*LCPIFPDNHSGF*DILGVDS 191
             V AWS  EA+EAEK+RKEAEI+KYKMQ+HVVE+E A N A L  +FPD HSGF DI+  ++
Sbjct: 3045 AVDAWSRVEAEEAEKRRKEAEILKYKMQEHVVESEEAINLAKLRALFPDYHSGFKDIMAENA 3106
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BLAST of mRNA_H-paniculata_contig4257.10879.1 vs. uniprot
Match: A0A6H5JCJ9_9PHAE (Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ9_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.710e-13
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 3 
Query:    6 VVCAWSNAEADEAEKKRKEAEIIKYKMQDHVVETEGAANKA*LCPIFPDNHSGF*DILGVDS 191
             V AWS  EA+E EK+RKEAEI+K+KMQ+HVVE+E A   A L  +FPD  SGF DI+  ++
Sbjct: 2220 AVDAWSRVEAEELEKRRKEAEILKFKMQEHVVESEEAIRLAKLRALFPDYQSGFEDIIAENT 2281
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4257.10879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FL28_ECTSI3.600e-1662.90Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JCJ9_9PHAE4.710e-1356.45Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4257contigH-paniculata_contig4257:14542..15538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size196
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930293.7657514-CDS-H-paniculata_contig4257:14541..146391622930293.7657514-CDS-H-paniculata_contig4257:14541..14639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4257 14542..14639 +
1691481228.8448873-CDS-H-paniculata_contig4257:14541..146391691481228.8448873-CDS-H-paniculata_contig4257:14541..14639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4257 14542..14639 +
1622930293.7791965-CDS-H-paniculata_contig4257:15441..155381622930293.7791965-CDS-H-paniculata_contig4257:15441..15538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4257 15442..15538 +
1691481228.8553777-CDS-H-paniculata_contig4257:15441..155381691481228.8553777-CDS-H-paniculata_contig4257:15441..15538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4257 15442..15538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4257.10879.1prot_H-paniculata_contig4257.10879.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4257 14542..15538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4257.10879.1

>prot_H-paniculata_contig4257.10879.1 ID=prot_H-paniculata_contig4257.10879.1|Name=mRNA_H-paniculata_contig4257.10879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MRSCVLGLTLRQMKRKRRGRRRKSSNTRCRIMWWRRRELPTRPDCVQSSL
TTTAASRISWESIQT
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mRNA from alignment at H-paniculata_contig4257:14542..15538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4257.10879.1 ID=mRNA_H-paniculata_contig4257.10879.1|Name=mRNA_H-paniculata_contig4257.10879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=997bp|location=Sequence derived from alignment at H-paniculata_contig4257:14542..15538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGTCGTGTGTGCTTGGTCTAACGCTGAGGCAGATGAAGCGGAAAAG
AAGAGGAAGGAGGCGGAAATCATCAAATACAAGATGCAGGATCATGTGGT
GCGTATTTGTATTCTTAATCCTGCCTTTCTTTCGCGTGTCTTGCGTGCAA
ACGCTTAGGGGACTGAAAGTCGATGACCTTCCTGTGCCCAGCGCAAATCT
TCCCTAGAATGTGTAGTGTGCAGATCGTACATATCTTGATTCCATGATGA
GAACTTCCAGTCACCAAAATTTGAAGCCCGTTATTCCCCGCGATTTGTTG
ACGCGATTGATACCAAATTAGCCACCACACTAACAGTGTGCATGAAGTGT
TCCTTGCCTTATTCGCTGCTCGTTTAAATACCGCCATTCATGTGTCAATG
AGTGTCGTGAGCCAGGTCATGAATGAAAGCTATCCCACGTTCGTGAGGAG
TAATAAGCACATAACTCTAATTTTTCACCTTGTGGCTGCTATGACATCAT
AATTCATGTCCAGTACTATCGATACTCTGGCGATAATTTATAAGATGGTA
TTGTGAGTAATCCCTCTTGTGCACTTGTTCTTCCGCAATTCTGTATAGTA
TGCGGTGGATGATTGCTATATGTTGGTATGTTACCTTGACGCTCATGGTT
TCTGCGAGTTCCGTTATACTGGGTCGTTGTTCGGTGACTTTTCAAATAGT
CTCCCCCTGGTAAGTACGACCACTTGTCTTTTGGGGAGAGTCAAGATGAA
AAAGGCACTCAAGAACAATTCGTGCGAGAGAGTAGTACGCGTCACTTCCT
TCTAGGCTATTGAGCGAACGACAGACTTTCGTGTTTTATTGACTACAGTT
CACTCAAGTACTGTCGTTTCGTGCCAATGGGCCGCTCACACCATGTACAG
GTGGAGACGGAGGGAGCTGCCAACAAGGCCTGACTGTGTCCAATCTTCCC
TGACAACCACAGCGGCTTCTAGGATATCCTGGGAGTCGATTCAAACG
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Coding sequence (CDS) from alignment at H-paniculata_contig4257:14542..15538+

>mRNA_H-paniculata_contig4257.10879.1 ID=mRNA_H-paniculata_contig4257.10879.1|Name=mRNA_H-paniculata_contig4257.10879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig4257:14542..15538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGTCGTGTGTGCTTGGTCTAACGCTGAGGCAGATGAAGCGGAAAAG
AAGAGGAAGGAGGCGGAAATCATCAAATACAAGATGCAGGATCATGTGAT
GCGGTCGTGTGTGCTTGGTCTAACGCTGAGGCAGATGAAGCGGAAAAGAA
GAGGAAGGAGGCGGAAATCATCAAATACAAGATGCAGGATCATGTGGTGG
AGACGGAGGGAGCTGCCAACAAGGCCTGACTGTGTCCAATCTTCCCTGAC
AACCACAGCGGCTTCTAGGATATCCTGGGAGTCGATTCAAACGGTGGAGA
CGGAGGGAGCTGCCAACAAGGCCTGACTGTGTCCAATCTTCCCTGACAAC
CACAGCGGCTTCTAGGATATCCTGGGAGTCGATTCAAACG
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