mRNA_H-paniculata_contig4256.10878.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE) HSP 1 Score: 154 bits (389), Expect = 3.100e-42 Identity = 80/189 (42.33%), Postives = 120/189 (63.49%), Query Frame = 1
Query: 10 EEEEMTKFSYQEEVGALMWTATTTRPDIACAVRAVARFCERPGPAHKKAVIKIIQYLLHTMGCSITYGQG--CGLSMEAYTD*DFGACLDTRRSVSSGVMMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSMTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVRD 570
++EE+ + ++E +G+LMW AT TRPDIA AVRAVAR+C P H +A + I+ Y++ T IT+ +G GLSME + D D+ + RRSVS G++M G ISW SR QK T+EA+Y++L+ +K+V+FL Q FM P + + VF+DN+ AI+L ++ KHI ++HH +R+
Sbjct: 107 QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNLKHIDVRHHFIRE 295
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 156 bits (395), Expect = 4.150e-42 Identity = 85/215 (39.53%), Postives = 131/215 (60.93%), Query Frame = 1
Query: 10 EEEEMTKFSYQEEVGALMWTATTTRPDIACAVRAVARFCERPGPAHKKAVIKIIQYLLHTMGCSITYGQG--CGLSMEAYTD*DFGACLDTRRSVSSGVMMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSMTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVRDASDVEKVRV-------AYADLLIKPL 627
++EE+ + ++E +G+LMW AT TRPDIA AVRAVAR+C P H +A + I+ Y++ T IT+ +G GLSME + D D+ + RRSVS G++M G ISW SR QK T+EA+Y++L+ +K+V+FL Q FM P + + VF+DN+ AI+L ++ +KHI ++HH +R+ +++ + +AD L K L
Sbjct: 208 QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKAL 422
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE) HSP 1 Score: 152 bits (385), Expect = 5.580e-42 Identity = 82/215 (38.14%), Postives = 129/215 (60.00%), Query Frame = 1
Query: 10 EEEEMTKFSYQEEVGALMWTATTTRPDIACAVRAVARFCERPGPAHKKAVIKIIQYLLHTMGCSITYGQG--CGLSMEAYTD*DFGACLDTRRSVSSGVMMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSMTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVRDASDVEKVRVAY-------ADLLIKPL 627
++EE+ + ++E +G+LMW AT TRP+IA A RAVAR+C P H +A + I+ Y++ T IT+G+G GLSME + D D+ + RRSVS G +M +G ISW SR Q+ T+EA+Y++L+ +K+V+FL Q FM P + + VF+DN+ AI+L ++ +KH ++HH + + +++ + Y AD L K L
Sbjct: 63 QDEEVVSWPFRELIGSLMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFIGELVGRKEISIFYVESAYQHADFLTKAL 277
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 152 bits (384), Expect = 6.260e-42 Identity = 82/216 (37.96%), Postives = 132/216 (61.11%), Query Frame = 1
Query: 10 EEEEMTKFSYQEEVGALMWTATTTRPDIACAVRAVARFCERPGPAHKKAVIKIIQYLLHTMGCSITYGQG--CGLSMEAYTD*DFGACLDTRRSVSSGVMMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSMTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVRDASDVEKVRV-------AYADLLIKPLD 630
++EE+ + ++E +G+LMW AT TRPDIA AVRAVAR+C P H +A + I+ Y++ T IT+ +G GLSME + D D+ + RRSVS G++M G +SW SR QK T+EA+Y++L+ +K+V+FL Q + F+ P + + V +DN+ AI+L ++ +KHI ++HH +R+ +++ + +AD L K L+
Sbjct: 24 QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALN 239
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Match: A0A6H5KPF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF9_9PHAE) HSP 1 Score: 153 bits (387), Expect = 1.050e-41 Identity = 88/214 (41.12%), Postives = 124/214 (57.94%), Query Frame = 1
Query: 13 EEEMTKFSYQEEVGALMWTATTTRPDIACAVRAVARFCERPGPAHKKAVIKIIQYLLHT--MGCSITYGQGCGLSMEAYTD*DFGACLDTRRSVSSGVMMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSMTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVRDASDVEKVRVAY-------ADLLIKPL 627
+EE T F ++E VG+LMW AT TRPDIA AVRAVAR+C P H A + I+ Y T MG S G G S++ Y D DF + RRSVS G++ G +SW SR QK T+EA Y+AL VK+++FL Q FM P + + + VF+DN+ AI+L ++ +KHI ++HH +R+ + +++ V + AD L K L
Sbjct: 122 DEEATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKRVHWDAAMGILGYAKRTSYMGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGVVSWFSRTQKCVTLSTTEAGYVALGDVVKEILFLRQVWRFMLPKVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKRL 335
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE) HSP 1 Score: 154 bits (388), Expect = 4.230e-41 Identity = 80/188 (42.55%), Postives = 120/188 (63.83%), Query Frame = 1
Query: 10 EEEEMTKFSYQEEVGALMWTATTTRPDIACAVRAVARFCERPGPAHKKAVIKIIQYLLHTMGCSITYGQG--CGLSMEAYTD*DFGACLDTRRSVSSGVMMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSMTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVR 567
++EE+ + ++E +G+LMW AT TRPDIA AVRAVAR+C P H +A + I+ Y++ T IT+ +G GLSME + D D+ + RRSVS G++M G ISW SR QK T+EA+Y++L+ +K+V+FL Q FM P + + VF+DN+ AI+L ++ +KHI ++HH +R
Sbjct: 149 QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHCRAGLGILGYVVRTSELGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIHVRHHFIR 336
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 156 bits (395), Expect = 4.940e-41 Identity = 85/215 (39.53%), Postives = 131/215 (60.93%), Query Frame = 1
Query: 10 EEEEMTKFSYQEEVGALMWTATTTRPDIACAVRAVARFCERPGPAHKKAVIKIIQYLLHTMGCSITYGQG--CGLSMEAYTD*DFGACLDTRRSVSSGVMMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSMTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVRDASDVEKVRV-------AYADLLIKPL 627
++EE+ + ++E +G+LMW AT TRPDIA AVRAVAR+C P H +A + I+ Y++ T IT+ +G GLSME + D D+ + RRSVS G++M G ISW SR QK T+EA+Y++L+ +K+V+FL Q FM P + + VF+DN+ AI+L ++ +KHI ++HH +R+ +++ + +AD L K L
Sbjct: 382 QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKAL 596
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 150 bits (380), Expect = 5.720e-41 Identity = 81/215 (37.67%), Postives = 127/215 (59.07%), Query Frame = 1
Query: 10 EEEEMTKFSYQEEVGALMWTATTTRPDIACAVRAVARFCERPGPAHKKAVIKIIQYLLHTMGCSITYGQGC--GLSMEAYTD*DFGACLDTRRSVSSGVMMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSMTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVRDASDVEKVRVA-------YADLLIKPL 627
E E ++E VG+LMW AT TRPDIA AVRAVAR+C P H KA + I+ Y+ T IT+ +G G+SM+ + D D+ + RRSVS G++M G ++W SR QK T+EA+Y+A++ +K+V+FL Q FM P + + VF+DN+ AI++ + + +KHI ++HH +R+ + +++ + +AD L K +
Sbjct: 91 ENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAI 305
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE) HSP 1 Score: 154 bits (388), Expect = 6.690e-41 Identity = 86/214 (40.19%), Postives = 127/214 (59.35%), Query Frame = 1
Query: 13 EEEMTKFSYQEEVGALMWTATTTRPDIACAVRAVARFCERPGPAHKKAVIKIIQYLLHTMGCSITYGQGC--GLSMEAYTD*DFGACLDTRRSVSSGVMMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSMTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVRDASDVEKVRVAY-------ADLLIKPL 627
+E T+F ++E VG+LMW AT TRPDIA AVRAVAR+C P H A + I+ Y T I++ +G G S++ Y D DF + RRSVS G++ GA+SW SR QK T+EA+Y+AL VK+++FL Q FM P + + + VF+DN+ AI+L ++ +KHI ++HH +R+ + +++ V + AD L K L
Sbjct: 233 DEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 446
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 151 bits (382), Expect = 9.920e-41 Identity = 81/215 (37.67%), Postives = 128/215 (59.53%), Query Frame = 1
Query: 10 EEEEMTKFSYQEEVGALMWTATTTRPDIACAVRAVARFCERPGPAHKKAVIKIIQYLLHTMGCSITYGQGC--GLSMEAYTD*DFGACLDTRRSVSSGVMMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSMTIGAVNVFQDNERAIKLTNKKYASRRTKHIAIKHHMVRDASDVEKVRVAY-------ADLLIKPL 627
E E ++E VG+LMW AT TRPDIA AVRAVAR+C P H KA + I+ Y+ T IT+ +G G+SM+ + D D+ + RRSVS G++M G ++W SR QK T+EA+Y+A++ +K+V+FL Q FM P ++ + VF+DN+ AI++ + + +KHI ++HH +R+ + +++ + + AD L K +
Sbjct: 146 ENEASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAI 360 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4256.10878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4256.10878.1 >prot_H-paniculata_contig4256.10878.1 ID=prot_H-paniculata_contig4256.10878.1|Name=mRNA_H-paniculata_contig4256.10878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp MMLAKGAISWHSRMQKITASGTSEAKYIALSKSVKDVMFLMQAQEFMEPSback to top mRNA from alignment at H-paniculata_contig4256:8425..9066+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4256.10878.1 ID=mRNA_H-paniculata_contig4256.10878.1|Name=mRNA_H-paniculata_contig4256.10878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=642bp|location=Sequence derived from alignment at H-paniculata_contig4256:8425..9066+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4256:8425..9066+ >mRNA_H-paniculata_contig4256.10878.1 ID=mRNA_H-paniculata_contig4256.10878.1|Name=mRNA_H-paniculata_contig4256.10878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig4256:8425..9066+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |