mRNA_H-paniculata_contig4255.10876.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4255.10876.1
Unique NamemRNA_H-paniculata_contig4255.10876.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4255.10876.1 vs. uniprot
Match: A0A6H5KUG3_9PHAE (Mitochondrial inner membrane protease subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUG3_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 2.010e-50
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    1 ALIKRVIAVDGDVVEIKNGNLIINGEQQLEDY---EPEYKWGPQKVPEGMVMVLGDNRNHSLDSHIWGFLPRENVIGRAVFKYWPPWRAGLVE 270
            ALIKRVIAV GDVV+IK+G+L +NG++Q EDY   EPEY WGPQ VPEGMVMVLGDNRNHSLDSHIWGFLP ENVIGRA+FKYWPPWRAG +E
Sbjct:  118 ALIKRVIAVGGDVVQIKDGSLFVNGQEQFEDYTFEEPEYSWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRAGTIE 210
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BLAST of mRNA_H-paniculata_contig4255.10876.1 vs. uniprot
Match: D8LS42_ECTSI (Mitochondrial inner membrane protease subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS42_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 6.510e-49
Identity = 74/93 (79.57%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    1 ALIKRVIAVDGDVVEIKNGNLIINGEQQLEDY---EPEYKWGPQKVPEGMVMVLGDNRNHSLDSHIWGFLPRENVIGRAVFKYWPPWRAGLVE 270
            ALIKRVIAV GD V+IK+G+L +NG++Q EDY   EPEY WGPQ VPEGMVMVLGDNRNHSLDSHIWGFLP ENVIGRA+FKYWPPWRAG +E
Sbjct:  191 ALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYSWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRAGTIE 283
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BLAST of mRNA_H-paniculata_contig4255.10876.1 vs. uniprot
Match: A0A836CAW9_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW9_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.580e-44
Identity = 67/93 (72.04%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:    1 ALIKRVIAVDGDVVEIKNGNLIINGEQQLEDY---EPEYKWGPQKVPEGMVMVLGDNRNHSLDSHIWGFLPRENVIGRAVFKYWPPWRAGLVE 270
            ALIKR++AV+GD V+I+ G + +NG+ Q E +   +PEY+WGP  VP G VMVLGDNRNHSLDSHIWGFLPRENVIGRAVFKYWPPWRAG VE
Sbjct:   58 ALIKRIVAVEGDTVQIRGGKVYLNGQAQDEPFVTDKPEYEWGPMVVPAGKVMVLGDNRNHSLDSHIWGFLPRENVIGRAVFKYWPPWRAGAVE 150
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BLAST of mRNA_H-paniculata_contig4255.10876.1 vs. uniprot
Match: K8YRM0_NANGC (Mitochondrial inner membrane protease subunit n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRM0_NANGC)

HSP 1 Score: 146 bits (369), Expect = 1.370e-41
Identity = 66/93 (70.97%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:    1 ALIKRVIAVDGDVVEIKNGNLIINGEQQLEDY---EPEYKWGPQKVPEGMVMVLGDNRNHSLDSHIWGFLPRENVIGRAVFKYWPPWRAGLVE 270
            ALIKR+IA  GDVVE+K+G L +NG  Q E Y    P Y WGP++VP+GM MVLGDNRNHSLDSHIWGFLP+EN+IGRA+ KYWPPWR GLVE
Sbjct:  196 ALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGLVE 288
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BLAST of mRNA_H-paniculata_contig4255.10876.1 vs. uniprot
Match: A0A6T5N089_HETAK (Mitochondrial inner membrane protease subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5N089_HETAK)

HSP 1 Score: 144 bits (363), Expect = 6.300e-41
Identity = 68/93 (73.12%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:    1 ALIKRVIAVDGDVVEIKNG-NLIINGEQQLEDYEPE---YKWGPQKVPEGMVMVLGDNRNHSLDSHIWGFLPRENVIGRAVFKYWPPWRAGLV 267
            ALIKRV+AV GDVVEIK+G +L INGE+Q E Y  E   Y+WGPQ VP+G V+VLGDNRNHSLD H+WGFLP EN+IGRAVFKYWPPWRAG +
Sbjct:  176 ALIKRVVAVAGDVVEIKDGGHLFINGEKQEEKYTNEDALYEWGPQTVPKGCVLVLGDNRNHSLDGHVWGFLPTENIIGRAVFKYWPPWRAGGI 268
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BLAST of mRNA_H-paniculata_contig4255.10876.1 vs. uniprot
Match: A0A7S2S8J5_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8J5_9STRA)

HSP 1 Score: 139 bits (351), Expect = 3.540e-39
Identity = 66/94 (70.21%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:    1 ALIKRVIAVDGDVVEIKNGN-LIINGEQQLEDYEPE---YKWGPQKVPEGMVMVLGDNRNHSLDSHIWGFLPRENVIGRAVFKYWPPWRAGLVE 270
            ALIKRV+AV GDVVE+K+G  L +NG  Q E +  E   Y WGP++VP GM+MVLGDNRNHSLDSH+WGFLP+ENVIGRAVFKYWP WR GL+E
Sbjct:  167 ALIKRVVAVAGDVVEMKDGGTLYVNGVPQPEGFTNEKAFYDWGPREVPAGMLMVLGDNRNHSLDSHVWGFLPKENVIGRAVFKYWPVWRLGLIE 260
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BLAST of mRNA_H-paniculata_contig4255.10876.1 vs. uniprot
Match: A0A482SHQ3_9ARCH (Signal peptidase I n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHQ3_9ARCH)

HSP 1 Score: 135 bits (340), Expect = 1.530e-38
Identity = 61/95 (64.21%), Postives = 76/95 (80.00%), Query Frame = 1 
Query:    1 ALIKRVIAVDGDVVEIKNGNLIINGEQQLEDY-----EPEYKWGPQKVPEGMVMVLGDNRNHSLDSHIWGFLPRENVIGRAVFKYWPPWRAGLVE 270
            ALIKR++AV GD +E+KN +L +NG+ Q+E+Y     +P+Y   P  VPEGM++VLGDNR HS DSHIWGFLP+ENVIGRAV K+WPPWRAG VE
Sbjct:   82 ALIKRIVAVAGDTLEVKNQHLYVNGQLQVENYVQAHNQPDYILPPTTVPEGMLLVLGDNRIHSFDSHIWGFLPKENVIGRAVLKFWPPWRAGFVE 176
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BLAST of mRNA_H-paniculata_contig4255.10876.1 vs. uniprot
Match: A0A7S1E4I6_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E4I6_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.040e-37
Identity = 61/90 (67.78%), Postives = 72/90 (80.00%), Query Frame = 1 
Query:    1 ALIKRVIAVDGDVVEIKNGNLIINGEQQLEDYEPE---YKWGPQKVPEGMVMVLGDNRNHSLDSHIWGFLPRENVIGRAVFKYWPPWRAG 261
            ALIKR++A++GDVV+I+ G L INGE Q E +  E   Y++GP  VP G V+VLGDNRNHSLD HIWGFLP+ENVIGRAVF YWPPWR G
Sbjct:   91 ALIKRIVAIEGDVVKIREGKLYINGEPQDEPFTAEDAAYEFGPVTVPPGQVLVLGDNRNHSLDGHIWGFLPKENVIGRAVFVYWPPWRLG 180
[Close]
BLAST of mRNA_H-paniculata_contig4255.10876.1 vs. uniprot
Match: A0A7R9WYP6_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WYP6_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.160e-37
Identity = 62/90 (68.89%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:    1 ALIKRVIAVDGDVVEIKNGNLIINGEQQLEDY---EPEYKWGPQKVPEGMVMVLGDNRNHSLDSHIWGFLPRENVIGRAVFKYWPPWRAG 261
            ALIKR++A++GD VE+K G L ING+ Q E Y   + EY++GP  VPEG V+VLGDNRNHSLD HIWGFLP+ENVIGRAVF YWPPWR G
Sbjct:  214 ALIKRIVAIEGDQVEVKKGKLYINGDLQNEPYTAEDAEYEFGPVVVPEGAVLVLGDNRNHSLDGHIWGFLPQENVIGRAVFVYWPPWRLG 303
[Close]
BLAST of mRNA_H-paniculata_contig4255.10876.1 vs. uniprot
Match: A0A448Z2B4_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z2B4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 3.460e-37
Identity = 59/90 (65.56%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:    1 ALIKRVIAVDGDVVEIKNGNLIINGEQQLEDY---EPEYKWGPQKVPEGMVMVLGDNRNHSLDSHIWGFLPRENVIGRAVFKYWPPWRAG 261
            ALIKR++A++GD VE+K G L +NG++Q E +   + EY++GP  VP G V+VLGDNRNHSLD HIWGFLP+ENVIGRAVF YWPPWR G
Sbjct:  109 ALIKRIVAIEGDEVEVKMGKLYVNGDEQDEPFTAEDAEYEFGPVVVPPGNVLVLGDNRNHSLDGHIWGFLPKENVIGRAVFVYWPPWRVG 198
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4255.10876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUG3_9PHAE2.010e-5080.65Mitochondrial inner membrane protease subunit n=1 ... [more]
D8LS42_ECTSI6.510e-4979.57Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A836CAW9_9STRA1.580e-4472.04Mitochondrial inner membrane protease subunit n=1 ... [more]
K8YRM0_NANGC1.370e-4170.97Mitochondrial inner membrane protease subunit n=3 ... [more]
A0A6T5N089_HETAK6.300e-4173.12Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A7S2S8J5_9STRA3.540e-3970.21Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A482SHQ3_9ARCH1.530e-3864.21Signal peptidase I n=1 Tax=archaeon TaxID=1906665 ... [more]
A0A7S1E4I6_9STRA1.040e-3767.78Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A7R9WYP6_9STRA2.160e-3768.89Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A448Z2B4_9STRA3.460e-3765.56Mitochondrial inner membrane protease subunit n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4255contigH-paniculata_contig4255:14901..15996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue6.3e-39
Seed eggNOG ortholog2880.D8LS42
Preferred nameTPP1
KEGG koko:K03100
KEGG Pathwayko02024,ko03060,map02024,map03060
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006465,GO:0006508,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009668,GO:0009987,GO:0010027,GO:0010467,GO:0016020,GO:0016043,GO:0016485,GO:0016787,GO:0019538,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0051604,GO:0055035,GO:0061024,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564
EggNOG free text desc.serine-type peptidase activity
EggNOG OGsCOG0681@1,KOG0171@2759
EC3.4.21.89
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons2
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930293.5683413-CDS-H-paniculata_contig4255:14900..150801622930293.5683413-CDS-H-paniculata_contig4255:14900..15080Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4255 14901..15080 -
1691481228.7793872-CDS-H-paniculata_contig4255:14900..150801691481228.7793872-CDS-H-paniculata_contig4255:14900..15080Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4255 14901..15080 -
1622930293.5808-CDS-H-paniculata_contig4255:15900..159961622930293.5808-CDS-H-paniculata_contig4255:15900..15996Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4255 15901..15996 -
1691481228.7888541-CDS-H-paniculata_contig4255:15900..159961691481228.7888541-CDS-H-paniculata_contig4255:15900..15996Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4255 15901..15996 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4255.10876.1prot_H-paniculata_contig4255.10876.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4255 14901..15996 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4255.10876.1

>prot_H-paniculata_contig4255.10876.1 ID=prot_H-paniculata_contig4255.10876.1|Name=mRNA_H-paniculata_contig4255.10876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
ALIKRVIAVDGDVVEIKNGNLIINGEQQLEDYEPEYKWGPQKVPEGMVMV
LGDNRNHSLDSHIWGFLPRENVIGRAVFKYWPPWRAGLVEK*
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mRNA from alignment at H-paniculata_contig4255:14901..15996-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4255.10876.1 ID=mRNA_H-paniculata_contig4255.10876.1|Name=mRNA_H-paniculata_contig4255.10876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1096bp|location=Sequence derived from alignment at H-paniculata_contig4255:14901..15996- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTTTGATCAAGCGCGTCATCGCCGTCGATGGGGACGTTGTGGAGATCAA
GAACGGTAACCTGATCATCAATGGAGAACAGCAGCTGGAGGACTACGTCT
TCGAGGCGAGTATTGGTTAAGTTATAAACCCTCAGTCATCTTGGTTAGAG
ACGAAATACGCGTGGGGGTGTTTAGTGCCGATGAAGCGGATTTGCCGCAT
TGAGAATGGCCTGCGGAAAATCCTCCACGTCCTCCCACTCCTCCCCATCT
TCAGCCCTGTGTACGGATGCGTCTTGGTTGTTGCGTGCAATACAAGGAGT
CGAAAACGCGGCCATGTATGTGTGTGTATGTCAAGGCCTCCCCTACGTGT
GAATCGTATTTCGCCTGTGATGTAAGGGGTGCGAGTCTCAATTCTTACCA
TACAAGTTGTTGCCCTGGTCTCTTGGGATTAAAAAAAGGGCTTCTCGTGG
GGACCGTGCTCCAGGCCTCGGGCCAGCATTCGTATGTGAAGATCTGTGGC
GTTTGGTGGTTGATTTCAGAAGTCTCTCCGATAGAAGCCGCTTTTGACAG
TTCGAAAACCGACGATAGATTTGTATCTTCATGTACTGCAAGTATTTAAT
GGAATCTCCGATATGAGCTACTTCTCCACAGGCACTGGGTTCCACAAATG
TACTGTGTATAAGGAACCATGGGTTGATGAATATAACTATGTATAATCTC
ATGTATTTTTGCAACCCCAGTCATTTACAGTAGGCCACCGATTATTTCCT
TTGCGAGCTCGGTCTTTCGGGGGGTGAATCGCCCTCCATATTTTGTACAA
AACGATTCCATTTTGGACCGTCGCCACAGTTGCACCGTACTTTTATTGAT
AGGCATATATCCCATCCCCTATTTTTTTCATGTCTACTACATTATCTTGT
AACTGGATGATGGCAGGAGCCGGAGTACAAGTGGGGCCCGCAGAAGGTGC
CGGAGGGTATGGTGATGGTGCTCGGGGACAACCGGAACCATAGCTTAGAT
TCGCACATATGGGGATTCCTGCCAAGAGAGAATGTAATAGGCCGTGCGGT
CTTCAAGTATTGGCCACCGTGGCGGGCAGGGCTGGTGGAGAAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4255:14901..15996-

>mRNA_H-paniculata_contig4255.10876.1 ID=mRNA_H-paniculata_contig4255.10876.1|Name=mRNA_H-paniculata_contig4255.10876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig4255:14901..15996- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTTTGATCAAGCGCGTCATCGCCGTCGATGGGGACGTTGTGGAGATCAA
GAACGGTAACCTGATCATCAATGGAGAACAGCAGCTGGAGGACTACGCTT
TGATCAAGCGCGTCATCGCCGTCGATGGGGACGTTGTGGAGATCAAGAAC
GGTAACCTGATCATCAATGGAGAACAGCAGCTGGAGGACTACGAGCCGGA
GTACAAGTGGGGCCCGCAGAAGGTGCCGGAGGGTATGGTGATGGTGCTCG
GGGACAACCGGAACCATAGCTTAGATTCGCACATATGGGGATTCCTGCCA
AGAGAGAATGTAATAGGCCGTGCGGTCTTCAAGTATTGGCCACCGTGGCG
GGCAGGGCTGGTGGAGAAATAAGAGCCGGAGTACAAGTGGGGCCCGCAGA
AGGTGCCGGAGGGTATGGTGATGGTGCTCGGGGACAACCGGAACCATAGC
TTAGATTCGCACATATGGGGATTCCTGCCAAGAGAGAATGTAATAGGCCG
TGCGGTCTTCAAGTATTGGCCACCGTGGCGGGCAGGGCTGGTGGAGAAAT
AA
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