mRNA_H-paniculata_contig4254.10872.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4254.10872.1
Unique NamemRNA_H-paniculata_contig4254.10872.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4254.10872.1 vs. uniprot
Match: A0A835YQE8_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQE8_9STRA)

HSP 1 Score: 137 bits (346), Expect = 7.720e-35
Identity = 68/135 (50.37%), Postives = 92/135 (68.15%), Query Frame = 1 
Query:   28 VQNQFTVVLSWDEVRALQKLYGDPDSGTIDFMKFAVALGKSPGYGPDKTRRTYNFLPKHDMEYDLNAIEKKIVHKLEDRCEVAGNYQHQWARRMLCDSTSTTAGGMNKDQLKLRLSGLLGVELSDGEVDVLFRKY 432
            V++QF + L+ +E+ ALQ  Y     GT+DF++FA AL K+P YG D+TR  +NFLP      DL  +E+ +  K+ DR  +AGNYQ+Q A RMLCD+    AGGM ++ LKLR+S LLGVE++D EVD LF KY
Sbjct:    2 VESQFALALTVEEMVALQTRYPGNQPGTVDFLQFAEALSKTPQYGLDRTRGCFNFLPASKGNRDLQGLERDMRQKITDRLHLAGNYQYQSAYRMLCDANYQLAGGMGREDLKLRVSELLGVEINDREVDALFSKY 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4254.10872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YQE8_9STRA7.720e-3550.37EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4254contigH-paniculata_contig4254:10815..11932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_004420.1
Exons3
Model size444
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4254.10872.1prot_H-paniculata_contig4254.10872.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4254 10815..11932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930293.1394176-CDS-H-paniculata_contig4254:10814..109141622930293.1394176-CDS-H-paniculata_contig4254:10814..10914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4254 10815..10914 +
1691481228.6228125-CDS-H-paniculata_contig4254:10814..109141691481228.6228125-CDS-H-paniculata_contig4254:10814..10914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4254 10815..10914 +
1622930293.153634-CDS-H-paniculata_contig4254:11186..113561622930293.153634-CDS-H-paniculata_contig4254:11186..11356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4254 11187..11356 +
1691481228.6327102-CDS-H-paniculata_contig4254:11186..113561691481228.6327102-CDS-H-paniculata_contig4254:11186..11356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4254 11187..11356 +
1622930293.1743097-CDS-H-paniculata_contig4254:11758..119321622930293.1743097-CDS-H-paniculata_contig4254:11758..11932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4254 11759..11932 +
1691481228.6427653-CDS-H-paniculata_contig4254:11758..119321691481228.6427653-CDS-H-paniculata_contig4254:11758..11932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4254 11759..11932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4254.10872.1

>prot_H-paniculata_contig4254.10872.1 ID=prot_H-paniculata_contig4254.10872.1|Name=mRNA_H-paniculata_contig4254.10872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
MSLDEFKRQVQNQFTVVLSWDEVRALQKLYGDPDSGTIDFMKFAVALGKS
PGYGPDKTRRTYNFLPKHDMEYDLNAIEKKIVHKLEDRCEVAGNYQHQWA
RRMLCDSTSTTAGGMNKDQLKLRLSGLLGVELSDGEVDVLFRKYADP*
back to top

mRNA from alignment at H-paniculata_contig4254:10815..11932+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4254.10872.1 ID=mRNA_H-paniculata_contig4254.10872.1|Name=mRNA_H-paniculata_contig4254.10872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1118bp|location=Sequence derived from alignment at H-paniculata_contig4254:10815..11932+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCACTGGACGAGTTCAAGCGGCAGGTTCAGAATCAATTCACCGTAGT
CCTTAGCTGGGATGAGGTTCGCGCTCTGCAAAAGCTATATGGAGATCCAG
GTGCGCCTACGATGCATGTCGCACATGCTGAATTTACGTACGCTCATATC
TAACGCAATGTACAACGTGCCGTGCATAAAATCGTTGGTATCGTCTGGCT
GCCGATAGAGACATGGAGATTCTGACAAGGCCGCTTCACGATTTGTCACA
GTCTAGCATTCACTTTCTTTTGACCGAGGTACGTGGGTAACTGAGAATCG
GCTGCTCGGCTTTGCTTATGCGTTCGCCAAACCTTACTCGATAGCAATAT
ATGCTATAACCACACTCCGCAGATTCTGGGACTATCGACTTTATGAAGTT
TGCCGTGGCTTTGGGCAAGTCACCCGGGTACGGGCCCGATAAGACTCGAC
GCACTTACAACTTTCTCCCGAAACACGACATGGAGTACGATCTAAACGCC
ATAGAGAAGAAAATCGTACACAAGCTCGAGGACAGATGCGAGGTGAGAGG
GGATCAAGAGCCACAGGCAAGGAGCACAAGTGATGCACGTTTGTTACACA
TCCACGTCGAACTGTTCAGCTCGGAAACTGTGCATATTCTCAAACATTTT
GTAGTCTACTATCCAGAACTATATTCCTGGTCAAGGTACGTGGAGGCTGT
TGCGTCGTGAAAATACTCTGCAGGACATAGCTCTACTTAAGAATTCAGCT
CACATATATACATCGTGGCCATGGTATGCGAAGGCACCCAGCACCACAAG
AATATCGTGAGTAGTTCTCTTAATTTCTTGACACGAAAAGTCTTAAGCCA
CGGTCACGCCGAGCAATCGACAGCAAATAAGCCAACGTGCTCACCCACCC
CCATCCCCCACGCCGGCCCCCGTGGTACCCCTGCCGACACAAAGGTAGCG
GGGAACTACCAGCACCAGTGGGCTCGGCGCATGCTCTGCGATTCAACGTC
TACAACGGCAGGTGGCATGAATAAGGATCAGTTGAAGTTGAGACTAAGCG
GCTTGCTGGGGGTAGAGCTTAGCGACGGAGAGGTGGACGTCCTCTTCCGA
AAGTATGCCGATCCGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4254:10815..11932+

>mRNA_H-paniculata_contig4254.10872.1 ID=mRNA_H-paniculata_contig4254.10872.1|Name=mRNA_H-paniculata_contig4254.10872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig4254:10815..11932+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCACTGGACGAGTTCAAGCGGCAGGTTCAGAATCAATTCACCGTAGT
CCTTAGCTGGGATGAGGTTCGCGCTCTGCAAAAGCTATATGGAGATCCAG
ATGTCACTGGACGAGTTCAAGCGGCAGGTTCAGAATCAATTCACCGTAGT
CCTTAGCTGGGATGAGGTTCGCGCTCTGCAAAAGCTATATGGAGATCCAG
ATTCTGGGACTATCGACTTTATGAAGTTTGCCGTGGCTTTGGGCAAGTCA
CCCGGGTACGGGCCCGATAAGACTCGACGCACTTACAACTTTCTCCCGAA
ACACGACATGGAGTACGATCTAAACGCCATAGAGAAGAAAATCGTACACA
AGCTCGAGGACAGATGCGAGATTCTGGGACTATCGACTTTATGAAGTTTG
CCGTGGCTTTGGGCAAGTCACCCGGGTACGGGCCCGATAAGACTCGACGC
ACTTACAACTTTCTCCCGAAACACGACATGGAGTACGATCTAAACGCCAT
AGAGAAGAAAATCGTACACAAGCTCGAGGACAGATGCGAGGTAGCGGGGA
ACTACCAGCACCAGTGGGCTCGGCGCATGCTCTGCGATTCAACGTCTACA
ACGGCAGGTGGCATGAATAAGGATCAGTTGAAGTTGAGACTAAGCGGCTT
GCTGGGGGTAGAGCTTAGCGACGGAGAGGTGGACGTCCTCTTCCGAAAGT
ATGCCGATCCGTGAGTAGCGGGGAACTACCAGCACCAGTGGGCTCGGCGC
ATGCTCTGCGATTCAACGTCTACAACGGCAGGTGGCATGAATAAGGATCA
GTTGAAGTTGAGACTAAGCGGCTTGCTGGGGGTAGAGCTTAGCGACGGAG
AGGTGGACGTCCTCTTCCGAAAGTATGCCGATCCGTGA
back to top