mRNA_H-paniculata_contig4253.10870.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4253.10870.1
Unique NamemRNA_H-paniculata_contig4253.10870.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4253.10870.1 vs. uniprot
Match: A0A6H5JB99_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB99_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.030e-35
Identity = 70/105 (66.67%), Postives = 84/105 (80.00%), Query Frame = 1
Query:  481 AMGLKEFMHRKRVLELYRGILKRARTLGDVDITNEARRQFRIGKDETEPLKIKMLLADGMNYLEAMQGSSRG----GAQPGASWLDIVDLEDERGRVGQGFPWER 783
            A+GLKEFMHR RVLELYRGILKRAR L D D+ +EARRQF+    ET+PLK++M++AD  N+LEAMQGS+RG    G   G SWLDI D ED+RGRVG+GFPW+R
Sbjct:  110 ALGLKEFMHRARVLELYRGILKRARALEDKDVADEARRQFKSCLGETDPLKVQMMVADATNHLEAMQGSTRGAGSGGRGGGDSWLDIHDPEDKRGRVGEGFPWQR 214          
BLAST of mRNA_H-paniculata_contig4253.10870.1 vs. uniprot
Match: D8LRC8_ECTSI (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC8_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 4.450e-31
Identity = 61/98 (62.24%), Postives = 76/98 (77.55%), Query Frame = 1
Query:  502 MHRKRVLELYRGILKRARTLGDVDITNEARRQFRIGKDETEPLKIKMLLADGMNYLEAMQGSSRGGAQPGA----SWLDIVDLEDERGRVGQGFPWER 783
            MHR RVLELYRGILKRAR L D D+ +EAR+QF+    ET+PLK++M++AD  N+LEAMQGS+RG    G     SWLDI D ED+RGRVG+GFPW++
Sbjct:    1 MHRARVLELYRGILKRARALEDKDVADEARKQFKSCLGETDPLKVQMMVADATNHLEAMQGSTRGAGSGGGGGDHSWLDIHDPEDKRGRVGKGFPWQQ 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4253.10870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JB99_9PHAE2.030e-3566.67Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
D8LRC8_ECTSI4.450e-3162.24Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4253contigH-paniculata_contig4253:3006..9724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionComplex 1 LYR protein
Ec32 orthologEc-06_003010.1
Exons3
Model size1249
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4253.10870.1prot_H-paniculata_contig4253.10870.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4253 7538..9261 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930292.8892643-UTR-H-paniculata_contig4253:3005..31501622930292.8892643-UTR-H-paniculata_contig4253:3005..3150Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4253 3006..3150 +
1691481228.4754653-UTR-H-paniculata_contig4253:3005..31501691481228.4754653-UTR-H-paniculata_contig4253:3005..3150Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4253 3006..3150 +
1622930292.9038815-UTR-H-paniculata_contig4253:7199..75371622930292.9038815-UTR-H-paniculata_contig4253:7199..7537Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4253 7200..7537 +
1691481228.4889307-UTR-H-paniculata_contig4253:7199..75371691481228.4889307-UTR-H-paniculata_contig4253:7199..7537Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4253 7200..7537 +
1622930292.9466276-UTR-H-paniculata_contig4253:9261..97241622930292.9466276-UTR-H-paniculata_contig4253:9261..9724Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4253 9262..9724 +
1691481228.5289867-UTR-H-paniculata_contig4253:9261..97241691481228.5289867-UTR-H-paniculata_contig4253:9261..9724Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4253 9262..9724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930292.9187903-CDS-H-paniculata_contig4253:7537..76001622930292.9187903-CDS-H-paniculata_contig4253:7537..7600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4253 7538..7600 +
1691481228.4986086-CDS-H-paniculata_contig4253:7537..76001691481228.4986086-CDS-H-paniculata_contig4253:7537..7600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4253 7538..7600 +
1622930292.932108-CDS-H-paniculata_contig4253:9021..92611622930292.932108-CDS-H-paniculata_contig4253:9021..9261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4253 9022..9261 +
1691481228.5104747-CDS-H-paniculata_contig4253:9021..92611691481228.5104747-CDS-H-paniculata_contig4253:9021..9261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4253 9022..9261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4253.10870.1

>prot_H-paniculata_contig4253.10870.1 ID=prot_H-paniculata_contig4253.10870.1|Name=mRNA_H-paniculata_contig4253.10870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MGLKEFMHRKRVLELYRGILKRARTLGDVDITNEARRQFRIGKDETEPLK
IKMLLADGMNYLEAMQGSSRGGAQPGASWLDIVDLEDERGRVGQGFPWER
*
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mRNA from alignment at H-paniculata_contig4253:3006..9724+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4253.10870.1 ID=mRNA_H-paniculata_contig4253.10870.1|Name=mRNA_H-paniculata_contig4253.10870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6719bp|location=Sequence derived from alignment at H-paniculata_contig4253:3006..9724+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTGCAAAAAAGGTTACACGTTCCCCTTTCAATACTGGTCGCGGTTCTC GAGAAATCTACAGAAACGGGCACTGGAGTATGACCTACTTGGGGCCCAAA TCCGTTTTAACCGGATATCTCGACTTCTACTTCCGATATCAAAAGGTGAG ATGCGTTCTTTTTCGTATTGGCATTTGCAATATCTTCGCAAAGTTTCAGC GTCTAATTCGTAAAGTTCAGCTGAAAACCACGCCGTTCAAGGAGGGTTCT CCGGTTTCCAGCCTACAAATAACAGCTGCGTAAGTGGATATCATGCAAAG TTTGAGCTGAATCTGCCGAAATATACTAAAATTTTGCGAAAATGAGGTAA ATACCAATATGAAGGTGACATGTGCCCCTTTTCAGTATCGGTCGTAGTTC TCGAGAAATTCGCAAAAAGTGGTCTCTACACACTTCTGTGTCATATTCCA GAATCGGATTTTTTAATTTCCAACATTTCTGATCTGAATTTCATTAAGTG GAGGTTAAAAAGTTTGCACAGATGATGTAAATGGCAATGCGAAGAAGTCT GGTCGTGCATCTCCAGAAATCCGGTACAAAAGGATATTGGAGGATGACCT ATTTAAGCCCAAAATATGATTTTGTCGGGTTTGTCGTGATCGACAACCGA TTTTTAGAAAGAGGAAAAACCCTTATTTTTCTATTGGCATTTACAACATC TGTTTCAATTTTTTCAAGCCTGCCTTTCGTTAAACTCATTTCAAGAACGT TCTTCGAGGAACCTTTACGCTTCTTCCTGCCACCCGCTTGTACATGTGGA GAGCGACTAGAGTACTCGCTGCTAATTGGGGGGCGACATATCTTGCTTTT TCAGTGCAGCGGCAAGCACTCATGATACTAGATTCTGTGCCAGGGCCGGG CACCCTACTGCCATCGATATTACCCCTAATCTTCTTCGGCAAATACCGCC GAGTATAGAGTCGACGAACCGTCAAATTGCCTTCCCACCAAAGACTTGTT GTGCAAGTTTGCCCTTCCGGACGTCCTGTCTATGAAGAGTGCGGGTATCG CGAAGATGGATTGCCCAGTGAGAACTGGATAGAGAAGCGACATACAGACG GACAAAGCACGCAGCTACCACTGTGCTTCTTTTTTGTGTCTGATGCGCTT ACGCGATAATAATTGTTTTAAAACATGAGAGAGACAAGAACACTGATTTC CGGTATCCGTGGTTTTATCATTTTTAAAAGTGAGAGAGAGAGGCCCTTTC AAAGGAGATTACCAAGGCTGGTTTGGAGTGAGATATGTTTACTGTCAGCA GTTTGTGTCAGAATGGTGGCAGAATTAGCTTCGGGGCAGTCAGTACTTTG GCGATGACCAATACATTACCGAAGGTAATGACACGCTAATGGCAGTCAAT CGATTTAACCCCTACAGACTCGGCTGCTTGCGTTGCGACAAATTTGGACA TGCGATTTTTGAAAGTCCCGCGTCGAAACGAGAGAGACGGTGGAGCTTTT GGCAAGGGAGGAGTACCGAATGTCGACGGACAGAATTACCATCGCCGGGT TGAGATTAAATGTCGACACCAGGCCGGCAAAAAAAAAAACTTTTATTTTT CTCAGGAGGCATTGTTGAAAAACATAATCGGCAGAATCTGGCGGTTATTT TTTTAGCCAATAATTGGCTGTGCCAACCGAGTGATCTTGGCCGGTGCATC CAAAAACCAGTGAGGCCGGCGATGCGAGCAGTCACTATGTCGGACTAAAT GAGTTCCACATTCCCACAAGGACAGCATGAGGCAACTGCCGCATATGCTC AGACTGTTTAGCGGTGTGACGGTTGAAGTGTTCCCGAATGCATTATGTTA TTATTGTGAAGCCTTTTTCCAAAAGTAGACACGGGCTGATCACGCCTCCT TGAAAATATAAGTGCGTTTTTTTCCCGGCCGGTGTCGATCTCTATCCTCA TCCTGATCGGACTCCGACGAATACTCGGAGGCGTTAGGCGAAGTACTCTC ATTGTCACTACTTGCGGAAACATCAGACTCCGACTCTGCTTTGCTTGGCC TCGTCGACAACCTTAGGTTTGCTCATGGTCTAAGCTGAAATAATTTCCCG GTTGTATTTTGCCTGGGTGCGCTGTGGTGGTTTGGAGGGGTAGGTGGTTG CGTGTTGCGAAGATGGAAGAAATGGCAAAACCAAAAAAGGATGGTCCCCT CTTGCAGAGAAAAACAAATGCGTGCAGCCAAATCTCACCATTTTTGTCGC GAAAATTTCGGTGGGTTGCGGGTGCGTGCATAACCCTTTTAGCGTACGAG ATGGGGCTAGTTTCCATATCTATACAGGGAAGCGTTTTCTCGTTCTCCGG TGCACCGGCTTCCCTGCTTTCCCGAAAAAATGGGGAAATAAAACGCCGAG TGTTATTTTGTGAACCGGTTAACCGAGTAAGCCGGAAAAAACGGAATATC AGGATGTCGGGTAAACGGTTCTTTCCCAGCCTGTGTCGACCTCTAGTTGA GATCAGACCTGTTTGTCGACAAGCATATTACGAATATTTAGTACAGCGGG ATTGCGGCGTGTTTTTGGTTATCAGTATGACTTTGAAAATATCAGGTGTT CACGTTGGGTATAGATGGGTATCGGCATTTTTTACACTTTTGGCGTTCGT CGAGGGCTGGTACAGTTGACAGACTGCAGCACACACATTGGTTTCATCGT GTAGTGGCAGCCCAGCTGGACAGCGCAAACAGCTTACCGCCGTAGAGTTG CGTACGGGGACAAAATTAACAGACAAAACATTGGATGCAGTACAGTTGGT GTGCTACTGCGTGCAGCACAATCTGCGGAATATTTCGTCTGTGTCTTAAG TAAAGTCGATTGGGTTTGGCAGGTTATGTATCCAGATCCCATTTTTTTAA GGGCTGGAACTCCGAAACCCCTGTGAAGTTTGCGTCTTGCAAATAGGGTA GTACGGAGGGCATCGTAGCAAGTGTCGTGATTCATGTTCGAAAGGATTTC CTGTTAGGGTTTCCCTGGGTAACTTCTTTCCGGAGGGCACCACGCAATCC GTGTACTTCGGTACATGGTGATGCATTTCTGAGAACGAGTCTAAGCCCTA ACGGGTAGGGCACGGCTAGGGGTAACCCATTGCCGATGACCGGACGCAAG TGTGATCAAGGGTTTTAACGAGTGAGGATTCTGCTACTCAAAGGGCAGTC TAAAACCGAGCGTCAACTCGGCCAAGTCTCGTACAACGGCTACCCCACGA TTCCCTCGGTTCTTGAGCTTAGAACCGAGGGAAGACCGACGTGATCATTA ACCCGAGTTCTTCGGGGATCTAAATCGGGACTTCGTACTTGATACTTAGT CGTGGGATTAAGCTCCTTCCCTCACAGCACTTACGAGGTATGTTAACAGA GGTTGCATATGCCGGGGTGGAAAGGAAAAATCTAAATTGTGATAAGACTC ATATGCGTTATTCCACAGCTCCTTCCGAGTTGTGTATCAGAATTAATGGT CCGCTTACGGTTGGGCTAATTTTGACCATTTTTGTGTTTATTTCGATTTT GAACCTTTTGCTATCGGAAATTTACGAGAAAGGGTAAAATACGACCTTTT TCGGTCCACTTCATTTTTGCGCCGCGCGTGCACGCGATTGACTTTACCCA TTTCGGTTAAATGTTTTGGGGATCAACCCCAAAACATGTAAGAGTCTAAC TGTAAAGATACAATTAATATCGGAGACGCTCAAGTAAGTTCCTCTGCAAA AAAATTTCAATTAATACTTCTGGCACAGAGGACGTACAACGAAAAGAGAC GATGAAGAGAGTTGGCGGCAGGCACCAGGACATCCCGATAACTTCATGGC GAAAAATGGGCGTTGCGTATATAGCATCCTATTATGAGTAACGGTACCCA TAGGGACAGCAGTTGGCGGTGTGCCACGGTCGTTCCAGTCAGGACATGAC AATATGATTGATATCTATTGTAGTTGGTCATTAGGCGTTAGGGTTCCTGG AACAAACTTGTCTCTTTCTGCAAGACTTTTTTTTTTTTCCAAGTTTGAAA GGATATACTCCGAAATTGCCCCATGTCTACAGGTGGTAAATGCAAAGGCT TGAAAAATACCCCGCTCGCCTCACCCTGGCAAATCCTACTGATTTGTCGA GCTTCTCCCCTGCCACCTCTTTTTACCATGCTTTTGTACGGCAGGTGGCG CTCGGACGCTGCTGCACGAGGTGAAAGGAACCTTCCGAGAAACACCTGTC AATAACAGCAGCAGCAGTAGTTGTAGCATTAGCAGGGCCTCTTTGTCGAG GCAGTTGACCTCCTCCTTGTATTTTTCTACACAACCGACGGAGGGGGGAT CCGACGGGAAACCCAATGGCAACACTGCCGCCTCGGGTCCTATCGGTGGT GGTGACGTGGTGATAGGGACAAAGGCTAGTCAAGAAGGTGCGCCCGGCGT GCGGCAGGAGCGTCGGCGGGTAGGTGGCAGTGGCACGAGAAATAGTGGCA ATATTAGCGGAGGCAGGAAGCTGGCGGGTGCCATGGGATTAAAGGAATTT ATGCACCGAAAACGCGTGCTGGAACTTTACAGAGGAATACTAAAGGTACG TGAAGGAGCAGTGTGCAAAGCTAATGTGTTCATTGTATACTGCAGCTCCC AAGTTCAACAGTCTGTTGCTGCGGTGGTATTGCGTGGCAAGGAAATCGTA CAAGTAGCCGGCAACGCATTGTAGACCTACGATGGCCGCCATGTAGTTCT TAGTTGTGGTGAGCTTCTCGTTTCTCTCAAGTTAGCCCCACAATTGCATT TCGCTGTCCACGCTGTGGGGCGGGTCCATCGTGTTCGAGTTAGCCTTTTT GCTGGTTCTTGGCTGCTGGCGATCAAGAGGGAGTCAACCCTCTGGTTCGT TCCTGGGGAAAAAAACACTCGACAGAAGGAAGATGTTATTCCAGGAGGCC CAACGCCGAAGTACCAATTGTGTACTACTCTACTCTATCACCCGTATTTT CGTGTTCCGACTACGGCTGTGGCAACCTACCTGCTGCCGCTGGGTCGGTG GGTACCATCACGCATTAGAGGGCAGCATATACGCAGAGGCTATGGCTCGC TGAGGGACTCTCGGGAGACGCTGGTGCCTGAAACTTCTTTCCCTCTCCTC ATTGTGTTGCCATTATTGCAGTATCACCGCGCAGATTGACATGGTTGTAC GGCAGTACAGACACAAACGGTACTCCATCCGTCCTACTGACTGTCTATTT CTTCCGTTACCGAGCGCAACTGTGCTGACTGTATTATGCTGTTGGCGCTA TCCAGTTGGTTGTCACCGTTCGATGTAACCAATGTATGTTACGTAGTCTA TCAGCTGTACTACCTCCACATCGAGCACATGCCATTGCTGCTGGAGAACA CCAGCCTCGGGCGTGCAATGGTTTAACATGAGAAATGATGAGATTTGACC CATTTTGCTCCTGGCGTCACGTGATTGTGTTCTAGTTTTAGTAAAAATTC ATATGATGTCACGTGATTCTATTCATTTCGTAGTATGCATGTCACATGCG GGATATCGCCAAGCCCGCAAATGCATTTCGATCAACAAATGTTACGTCCC CCGCTCTTCAAAATGTACCCCCCCTCCTCATCTTTTGATACGGGACTGTG AGGTTTCCCGTGTCACAAGGTGTCATACGCCAGGCCCCCAGAAGTCAAAG GATTGAGTGCAACTCGAATATGAGCTTCTTATACTATGCGTTGACCATGC AGCATGCCTACACCACATGGTTCTTGAAGACCTGTTACGACATCGCTGAT GTGTTGGGTCGATCCACCATATCCGCATACTAAAGTATCAGTCGCCCGCC GCCCCTCCCTGAATACTCAAGTACACCACATTGATTATCCTTCTTCAAAA ACAAGTAAATCATTCCGATATTTGCTATTTTTTTTCAAATATAAAATATT TTCCCCTCCCCTGTTTCTTCTTACTCGTTTCGGCGGGGTGGCGGGCGGAC GCACCTACTATCACAGCGAGCTCGAACGCTGGGAGACGTAGATATTACCA ACGAAGCTCGCCGACAGTTCCGGATAGGCAAAGACGAGACGGAGCCTCTG AAGATCAAAATGCTACTTGCGGACGGCATGAACTACCTCGAGGCGATGCA GGGCTCCTCCAGAGGAGGAGCCCAACCAGGAGCGTCGTGGCTTGATATTG TTGACCTCGAAGACGAGCGGGGAAGGGTGGGACAAGGATTTCCGTGGGAA CGCTAGCTTTCCTGTCGAGAGGCGTGTTTGGACGTAATAGAGAGAGTGGT GGCGGGACCTATTCGTGGAGGAGTACGGTTTGATATAAAGTACCAAACTT TGCGAAGATTGTTGTATTTGAATTGATTCAATTATACTGCCCGGATGAGC GTCTGGTCGTGGCGGCGGTGGCGGTGATAGTGGTGTTGGTGGTGTTGGTG GTGGTGGCGGCATGTGTTGCTGCAGTAAACAACGTGTGGAAACCATTTCC GAAATTGTTTTCGCGACCAGAGTGGCACGTTCTCTCTCTCTCTCTCTCTC TTTCTGTATGTGTCTGTGTTCGTGTCTGTGTCTGGCTGTATCCATGCGTT TTACTCTGAATCGTTTCGCGTTTTTTAGTTCGCAAGCCTATTGGTACGGT GCTGTCAAGAACATGGAATCCGTGCAAAAAAGCTTCAACTGACGAAATGC CAAGACTATTACTGTCGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig4253:3006..9724+

>mRNA_H-paniculata_contig4253.10870.1 ID=mRNA_H-paniculata_contig4253.10870.1|Name=mRNA_H-paniculata_contig4253.10870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig4253:3006..9724+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGATTAAAGGAATTTATGCACCGAAAACGCGTGCTGGAACTTTACAG
AGGAATACTAAAGATGGGATTAAAGGAATTTATGCACCGAAAACGCGTGC
TGGAACTTTACAGAGGAATACTAAAGCGAGCTCGAACGCTGGGAGACGTA
GATATTACCAACGAAGCTCGCCGACAGTTCCGGATAGGCAAAGACGAGAC
GGAGCCTCTGAAGATCAAAATGCTACTTGCGGACGGCATGAACTACCTCG
AGGCGATGCAGGGCTCCTCCAGAGGAGGAGCCCAACCAGGAGCGTCGTGG
CTTGATATTGTTGACCTCGAAGACGAGCGGGGAAGGGTGGGACAAGGATT
TCCGTGGGAACGCTAGCGAGCTCGAACGCTGGGAGACGTAGATATTACCA
ACGAAGCTCGCCGACAGTTCCGGATAGGCAAAGACGAGACGGAGCCTCTG
AAGATCAAAATGCTACTTGCGGACGGCATGAACTACCTCGAGGCGATGCA
GGGCTCCTCCAGAGGAGGAGCCCAACCAGGAGCGTCGTGGCTTGATATTG
TTGACCTCGAAGACGAGCGGGGAAGGGTGGGACAAGGATTTCCGTGGGAA
CGCTAG
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