mRNA_H-paniculata_contig42525.10869.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42525.10869.1
Unique NamemRNA_H-paniculata_contig42525.10869.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig42525.10869.1 vs. uniprot
Match: A9UWK9_MONBE (tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase (Fragment) n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UWK9_MONBE)

HSP 1 Score: 106 bits (264), Expect = 6.800e-26
Identity = 48/81 (59.26%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:   25 SQVELKESGCIFRFDFAKVYWNSRLQAEHARLIGIISQSNPGAKPLDIVVCDMMAGVGPFAVPLAKRGHRVFANDLNPDSF 267
            ++ E++E+GC ++FDFAKVYWNSRL  EH RL+ +I          D VVCDMMAGVGPFA+P+AK G RV+ANDLNP+S+
Sbjct:   86 TRCEVRENGCRYQFDFAKVYWNSRLHTEHQRLVDLIQP--------DEVVCDMMAGVGPFALPIAKNGRRVYANDLNPESY 158
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BLAST of mRNA_H-paniculata_contig42525.10869.1 vs. uniprot
Match: A0A1W0A2R7_9STRA (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2R7_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.130e-25
Identity = 49/81 (60.49%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:   31 VELKESGCIFRFDFAKVYWNSRLQAEHARLIGIISQSNPGAKPLDIVVCDMMAGVGPFAVPLAKRGHRVFANDLNPDSFRY 273
            VEL ESGC+F F+FA+VYWNSRLQ EH R+I   S ++        V+CDMM G+GPFAVPLAK+G +V+ANDLNP S+ Y
Sbjct:  184 VELNESGCVFNFNFAEVYWNSRLQQEHLRMIRQFSTTD--------VICDMMCGIGPFAVPLAKKGCKVYANDLNPKSYEY 256
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BLAST of mRNA_H-paniculata_contig42525.10869.1 vs. uniprot
Match: A0A425BJU9_9PEZI (tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase n=1 Tax=Scytalidium sp. 3C TaxID=2487125 RepID=A0A425BJU9_9PEZI)

HSP 1 Score: 100 bits (249), Expect = 4.700e-25
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:   31 VELKESGCIFRFDFAKVYWNSRLQAEHARLIGIISQSNPGAKPLDIVVCDMMAGVGPFAVPLAKRGHRVFANDLNPDSF 267
            VE+KE  CIFRFD++KVYWNSRL  EH RL+ +     PG      VVCD+MAGVGPFA+P  K+G  V+ANDLNPDS+
Sbjct:   61 VEIKEEECIFRFDYSKVYWNSRLNTEHRRLVAMFQ---PGE-----VVCDVMAGVGPFAIPAGKKGVFVWANDLNPDSY 131
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BLAST of mRNA_H-paniculata_contig42525.10869.1 vs. uniprot
Match: A0A6H5KRX9_9PHAE (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRX9_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.110e-24
Identity = 60/140 (42.86%), Postives = 67/140 (47.86%), Query Frame = 1 
Query:   25 SQVELKESGCIFRFDFAKVYWNSRLQAEHARLIGIISQSNPGA-----------------------------------------------------------KPLDIVVCDMMAGVGPFAVPLAKRGHRVFANDLNPDSF 267
            ++V +KESGC FRFDFAKVYWNSRLQ EHARLI +I Q                                                                 P  +VVCDMMAGVGPFA+PLAK GHRVFANDLNPDS+
Sbjct:  202 TEVVVKESGCSFRFDFAKVYWNSRLQTEHARLIKVIGQQQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAHRNPSTVVVCDMMAGVGPFAIPLAKNGHRVFANDLNPDSY 341
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BLAST of mRNA_H-paniculata_contig42525.10869.1 vs. uniprot
Match: A0A485L7Y3_9STRA (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7Y3_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.310e-24
Identity = 48/84 (57.14%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:   22 ISQVELKESGCIFRFDFAKVYWNSRLQAEHARLIGIISQSNPGAKPLDIVVCDMMAGVGPFAVPLAKRGHRVFANDLNPDSFRY 273
            + +V++ E+ C FRF+FA+VYWNSRLQ EH RL+  IS+++        VVCDMM G+GPFA+PL KRG  V+ANDLNP SF Y
Sbjct:  189 VMEVQVHETDCTFRFNFAEVYWNSRLQQEHLRLVKSISRND--------VVCDMMCGIGPFAIPLGKRGTTVYANDLNPRSFHY 264
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BLAST of mRNA_H-paniculata_contig42525.10869.1 vs. uniprot
Match: A0A8K0X290_9PEZI (Met-10+ like-protein n=1 Tax=Plectosphaerella cucumerina TaxID=40658 RepID=A0A8K0X290_9PEZI)

HSP 1 Score: 105 bits (261), Expect = 1.380e-24
Identity = 48/81 (59.26%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:   31 VELKESGCIFRFDFAKVYWNSRLQAEHARLIGIISQSNPGAKPLDIVVCDMMAGVGPFAVPLAKRGHRVFANDLNPDSFRY 273
            VE++E+ C+FRFD++KVYWNS+L+ EH RL+       PG      VVCD+MAG+GPFAVP AKRG  VFAND+NP+S+RY
Sbjct:  199 VEVRENDCVFRFDYSKVYWNSKLETEHTRLV---KSFQPGE-----VVCDVMAGIGPFAVPAAKRGVFVFANDMNPESYRY 271
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BLAST of mRNA_H-paniculata_contig42525.10869.1 vs. uniprot
Match: A0A7S1XZL2_9STRA (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZL2_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.460e-24
Identity = 50/80 (62.50%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:   31 VELKESGCIFRFDFAKVYWNSRLQAEHARLIGIISQSNPGAKPLDIVVCDMMAGVGPFAVPLAKRGHRVFANDLNPDSFR 270
            VE++ESGC+FRF++A+VYWNSRLQ EH R+I  IS         D +V D+MAGVGPFAVPLAK+G  V+ANDLNP  FR
Sbjct:  104 VEVRESGCLFRFNYAEVYWNSRLQMEHGRVIDAIST--------DEIVADVMAGVGPFAVPLAKKGCTVYANDLNPACFR 175
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BLAST of mRNA_H-paniculata_contig42525.10869.1 vs. uniprot
Match: A0A835Z8A4_9STRA (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A4_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.840e-24
Identity = 54/84 (64.29%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:   25 SQVELKESGCIFRFDFAKVYWNSRLQAEHARLIGII----SQSNPGAKPLDIVVCDMMAGVGPFAVPLAKRGHRVFANDLNPDS 264
            + VE+ ESGC F FDF +VYWNSRLQAEHARLI +I    +++   A  L   VCDMMAGVGPFA+PLAKRG  V ANDLNP S
Sbjct:  203 TNVEVHESGCTFCFDFREVYWNSRLQAEHARLIALIEAHRAKAQGDATELS-TVCDMMAGVGPFAIPLAKRGFNVHANDLNPKS 285
[Close]
BLAST of mRNA_H-paniculata_contig42525.10869.1 vs. uniprot
Match: A0A1X2HV42_SYNRA (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HV42_SYNRA)

HSP 1 Score: 103 bits (256), Expect = 4.560e-24
Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:   16 SLISQVELKESGCIFRFDFAKVYWNSRLQAEHARLIGIISQSNPGAKPLDIVVCDMMAGVGPFAVPLAKRGHRVFANDLNPDSFRY 273
            ++I+QV  KESGCIF+FDF++VYWNSRLQ EH RLI    +        D  +CD+  GVGPFA+P AK+G RV+ANDLNP+SFR+
Sbjct:  186 NMIAQV--KESGCIFKFDFSRVYWNSRLQTEHDRLIKKFKK--------DEYICDVFGGVGPFALPAAKKGCRVYANDLNPESFRW 261
[Close]
BLAST of mRNA_H-paniculata_contig42525.10869.1 vs. uniprot
Match: UPI00077A2F6D (tRNA (guanine(37)-N1)-methyltransferase-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A2F6D)

HSP 1 Score: 100 bits (250), Expect = 7.710e-24
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:   28 QVELKESGCIFRFDFAKVYWNSRLQAEHARLIGIISQSNPGAKPLDIVVCDMMAGVGPFAVPLAKRGHRVFANDLNPDSFR 270
            Q  +K+ GC+F FDF+KVYWNSRLQ EH RL+ +  + +        VVCDM AGVGPFA+P A +G  V+ANDLNP S++
Sbjct:   43 QTSIKQDGCVFEFDFSKVYWNSRLQTEHTRLVALFDRED--------VVCDMFAGVGPFAIPAANKGCTVYANDLNPASYQ 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42525.10869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A9UWK9_MONBE6.800e-2659.26tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarbox... [more]
A0A1W0A2R7_9STRA2.130e-2560.49tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Th... [more]
A0A425BJU9_9PEZI4.700e-2560.76tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarbox... [more]
A0A6H5KRX9_9PHAE1.110e-2442.86tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Ec... [more]
A0A485L7Y3_9STRA1.310e-2457.14tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Ap... [more]
A0A8K0X290_9PEZI1.380e-2459.26Met-10+ like-protein n=1 Tax=Plectosphaerella cucu... [more]
A0A7S1XZL2_9STRA1.460e-2462.50tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Ph... [more]
A0A835Z8A4_9STRA1.840e-2464.29tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Tr... [more]
A0A1X2HV42_SYNRA4.560e-2458.14tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Sy... [more]
UPI00077A2F6D7.710e-2454.32tRNA (guanine(37)-N1)-methyltransferase-like n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42525contigH-paniculata_contig42525:516..1420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score107.8
Seed ortholog evalue2.7e-21
Seed eggNOG ortholog81824.XP_001744829.1
Preferred nameTRM5
KEGG rclassRC00003,RC00334
KEGG koko:K15429
KEGG ReactionR00597
Hectar predicted targeting categoryother localisation
GOsGO:0000959,GO:0000963,GO:0001510,GO:0002939,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030431,GO:0030488,GO:0031974,GO:0032259,GO:0032501,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0052906,GO:0070013,GO:0070525,GO:0070900,GO:0070901,GO:0071704,GO:0090304,GO:0090646,GO:0140053,GO:0140098,GO:0140101,GO:1900864,GO:1901360
EggNOG free text desc.Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding
EggNOG OGs38BNK@33154,COG2520@1,KOG2078@2759
EC2.1.1.228
COG Functional cat.A
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons2
Model size279
Cds size279
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930292.8103926-CDS-H-paniculata_contig42525:515..6171622930292.8103926-CDS-H-paniculata_contig42525:515..617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42525 516..617 +
1691481228.4501207-CDS-H-paniculata_contig42525:515..6171691481228.4501207-CDS-H-paniculata_contig42525:515..617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42525 516..617 +
1622930292.8342693-CDS-H-paniculata_contig42525:1243..14201622930292.8342693-CDS-H-paniculata_contig42525:1243..1420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42525 1244..1420 +
1691481228.463521-CDS-H-paniculata_contig42525:1243..14201691481228.463521-CDS-H-paniculata_contig42525:1243..1420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42525 1244..1420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42525.10869.1prot_H-paniculata_contig42525.10869.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42525 516..1420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42525.10869.1

>prot_H-paniculata_contig42525.10869.1 ID=prot_H-paniculata_contig42525.10869.1|Name=mRNA_H-paniculata_contig42525.10869.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
MCALRSLISQVELKESGCIFRFDFAKVYWNSRLQAEHARLIGIISQSNPG
AKPLDIVVCDMMAGVGPFAVPLAKRGHRVFANDLNPDSFRYG*
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mRNA from alignment at H-paniculata_contig42525:516..1420+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42525.10869.1 ID=mRNA_H-paniculata_contig42525.10869.1|Name=mRNA_H-paniculata_contig42525.10869.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=905bp|location=Sequence derived from alignment at H-paniculata_contig42525:516..1420+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTGCTTTGCGTTCTTTGATCTCTCAGGTGGAATTGAAGGAGAGCGG
GTGCATTTTCAGGTTCGACTTCGCTAAAGTCTACTGGAACAGCCGCCTCC
AGGTGTGCCACGACCCTCGCCCCCTCCGACGGATTGGTGTTTAACCCCTC
AGAAACCGTGATTATCTCATCACGAGCCCCATGGACTGTTTAGCTTTATC
GACGACCTATCGTTGATTCCAGCTTGTCCGCCATGCATGCATCGCTTTTC
ACGGGCGAGTCGCTAGCTAGCCCCTGAACTTTACCCGCCGCTATTTGGGA
TCTTGTACATCGAAACGATCGTAAGCCCAGCGGCGCTTCAAGAGAGTACA
AAGAACGCTAACAGGTCGTGGACATGTATGTACCCTATATAGACCAGTTG
TGCGCCCGGGATTACATTCTGAAAAACCTAAAAACGCAAGTACTGTTTCC
GTCGCTAAGAGGAGTAAGACGTTAGACCGTGTACGCATTTACCGAAGGAG
GAAAACACAAGAAGAAAAAAAAAATGTTTAACCTCCCTGTGATTGGTCAG
GGTGTGTATACAATCACCCTGGTTAGCATGTAAGCGCATTGACTGGTCAG
CAAGCACAGAGAGTCACAGAGGAGGCTCAAGCGCTTCGTTTTTCATACTC
GTTTTGGTTGTGTTTTTTGCTTTCGATAATTACACGGTCTTAGCCCGCAT
TCCTCAATCCAAATCATTCGGAGGACAGGCGGAACACGCCCGACTGATCG
GAATAATATCGCAGTCGAATCCGGGGGCAAAGCCGCTCGACATCGTGGTG
TGTGATATGATGGCTGGCGTAGGGCCCTTTGCGGTACCGCTGGCGAAGAG
GGGTCATCGCGTCTTCGCGAACGACCTGAATCCGGATAGCTTCAGGTATG
GATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig42525:516..1420+

>mRNA_H-paniculata_contig42525.10869.1 ID=mRNA_H-paniculata_contig42525.10869.1|Name=mRNA_H-paniculata_contig42525.10869.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig42525:516..1420+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTGCTTTGCGTTCTTTGATCTCTCAGGTGGAATTGAAGGAGAGCGG
GTGCATTTTCAGGTTCGACTTCGCTAAAGTCTACTGGAACAGCCGCCTCC
AGATGTGTGCTTTGCGTTCTTTGATCTCTCAGGTGGAATTGAAGGAGAGC
GGGTGCATTTTCAGGTTCGACTTCGCTAAAGTCTACTGGAACAGCCGCCT
CCAGGCGGAACACGCCCGACTGATCGGAATAATATCGCAGTCGAATCCGG
GGGCAAAGCCGCTCGACATCGTGGTGTGTGATATGATGGCTGGCGTAGGG
CCCTTTGCGGTACCGCTGGCGAAGAGGGGTCATCGCGTCTTCGCGAACGA
CCTGAATCCGGATAGCTTCAGGTATGGATAAGCGGAACACGCCCGACTGA
TCGGAATAATATCGCAGTCGAATCCGGGGGCAAAGCCGCTCGACATCGTG
GTGTGTGATATGATGGCTGGCGTAGGGCCCTTTGCGGTACCGCTGGCGAA
GAGGGGTCATCGCGTCTTCGCGAACGACCTGAATCCGGATAGCTTCAGGT
ATGGATAA
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