mRNA_H-paniculata_contig4252.10865.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4252.10865.1
Unique NamemRNA_H-paniculata_contig4252.10865.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4252.10865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4252contigH-paniculata_contig4252:3829..4873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size447
Cds size447
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4252.10865.1prot_H-paniculata_contig4252.10865.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4252 3829..4873 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930292.7318432-CDS-H-paniculata_contig4252:3828..39071622930292.7318432-CDS-H-paniculata_contig4252:3828..3907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4252 3829..3907 -
1691481228.423468-CDS-H-paniculata_contig4252:3828..39071691481228.423468-CDS-H-paniculata_contig4252:3828..3907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4252 3829..3907 -
1622930292.745816-CDS-H-paniculata_contig4252:4104..41881622930292.745816-CDS-H-paniculata_contig4252:4104..4188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4252 4105..4188 -
1691481228.4320254-CDS-H-paniculata_contig4252:4104..41881691481228.4320254-CDS-H-paniculata_contig4252:4104..4188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4252 4105..4188 -
1622930292.7643776-CDS-H-paniculata_contig4252:4589..48731622930292.7643776-CDS-H-paniculata_contig4252:4589..4873Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4252 4590..4873 -
1691481228.4403977-CDS-H-paniculata_contig4252:4589..48731691481228.4403977-CDS-H-paniculata_contig4252:4589..4873Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4252 4590..4873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4252.10865.1

>prot_H-paniculata_contig4252.10865.1 ID=prot_H-paniculata_contig4252.10865.1|Name=mRNA_H-paniculata_contig4252.10865.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
NHPRGNSQQAVERLMESRGGVVWPQLLPSKMLGGINWHVRWRSRRHPSCG
HMQRQVAASGTGRGNRTRGDREGREGGSSPSSSLFSLVEDRLLCRGMHLH
SADWHKIRTNMLPHKATDTLMNRYAVLSGWASINGALRGQSSSQVCSV*
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mRNA from alignment at H-paniculata_contig4252:3829..4873-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4252.10865.1 ID=mRNA_H-paniculata_contig4252.10865.1|Name=mRNA_H-paniculata_contig4252.10865.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1045bp|location=Sequence derived from alignment at H-paniculata_contig4252:3829..4873- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCACCCCAGGGGCAACTCTCAGCAAGCAGTGGAACGACTCATGGAGTC
CCGGGGAGGGGTCGTTTGGCCGCAACTACTCCCAAGCAAAATGTTGGGGG
GTATAAACTGGCATGTTCGCTGGCGTAGCCGGAGGCATCCATCCTGTGGC
CATATGCAGAGGCAAGTGGCAGCTTCCGGAACAGGCCGTGGCAACCGCAC
ACGGGGCGACCGTGAGGGTCGCGAAGGAGGATCCTCTCCATCGTCTTCCT
TATTTTCTCTGGTTGAAGATAGACTGCTTTGCAGGTACGATTCATTGAGC
CTGTGCCTTCCCAGTGCATGAGATTGAGACGCAATTGCGTTGAGCTGCCT
TGGTGGCCTTTCTACGATGTAATTTACCCGCGCTTAGAAAACGTACCACA
GATGGCTTACTAGCATTATGCCCCACGTCTACAGATAAGAGGAGCAACAT
CGCCAAGCGACTGCAAAATATTTCTCCGCCATTACGAGCGCCGTTCCGCT
GTGAGAAGCTCTTTGATTGGCGCCAGCACTTTACGTATTTTCGTTTCATT
ACGCTGGAGTAGCGTGATGGAAATTGGTTCTCCTGTCAATCTCTTGCTAC
GCTTGTAACCTTGTTTTGAAGCGGGTCCTATTTGTTTGTGTGCTTAAACC
ACATCTTTGCTGTTATCGATACGCCACTTTCTCAGGGGAATGCACTTGCA
TAGCGCGGACTGGCACAAGATCAGAACCAACATGCTACCCCACAAGGCAA
CTGATACGCTTATGAACAGGTAAATTAGGTATCCTATGTTGTCATAGGCG
CATAAGTTGTTGATTTCGTTATCGTTTCCCTCATAAGCGGTGACTCCTGG
TCCGTAAGATCCTGTGACGTTTGCGCTGTTAACCACCTCCGACGATACTA
CACCGCCCATGGCCTTCTCGTCGAAGCCGTTCCCGCCACGTTCATTCGTT
TTTATTTGCACCTTAGGTATGCAGTCCTCTCCGGGTGGGCATCCATCAAT
GGCGCCCTACGTGGCCAGTCGTCGTCCCAGGTTTGTTCTGTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4252:3829..4873-

>mRNA_H-paniculata_contig4252.10865.1 ID=mRNA_H-paniculata_contig4252.10865.1|Name=mRNA_H-paniculata_contig4252.10865.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig4252:3829..4873- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCACCCCAGGGGCAACTCTCAGCAAGCAGTGGAACGACTCATGGAGTC
CCGGGGAGGGGTCGTTTGGCCGCAACTACTCCCAAGCAAAATGTTGGGGG
GTATAAACTGGCATGTTCGCTGGCGTAGCCGGAGGCATCCATCCTGTGGC
CATATGCAGAGGCAAGTGGCAGCTTCCGGAACAGGCCGTGGCAACCGCAC
ACGGGGCGACCGTGAGGGTCGCGAAGGAGGATCCTCTCCATCGTCTTCCT
TATTTTCTCTGGTTGAAGATAGACTGCTTTGCAGAATCACCCCAGGGGCA
ACTCTCAGCAAGCAGTGGAACGACTCATGGAGTCCCGGGGAGGGGTCGTT
TGGCCGCAACTACTCCCAAGCAAAATGTTGGGGGGTATAAACTGGCATGT
TCGCTGGCGTAGCCGGAGGCATCCATCCTGTGGCCATATGCAGAGGCAAG
TGGCAGCTTCCGGAACAGGCCGTGGCAACCGCACACGGGGCGACCGTGAG
GGTCGCGAAGGAGGATCCTCTCCATCGTCTTCCTTATTTTCTCTGGTTGA
AGATAGACTGCTTTGCAGGGGAATGCACTTGCATAGCGCGGACTGGCACA
AGATCAGAACCAACATGCTACCCCACAAGGCAACTGATACGCTTATGAAC
AGGGGAATGCACTTGCATAGCGCGGACTGGCACAAGATCAGAACCAACAT
GCTACCCCACAAGGCAACTGATACGCTTATGAACAGGTATGCAGTCCTCT
CCGGGTGGGCATCCATCAATGGCGCCCTACGTGGCCAGTCGTCGTCCCAG
GTTTGTTCTGTTTAGGTATGCAGTCCTCTCCGGGTGGGCATCCATCAATG
GCGCCCTACGTGGCCAGTCGTCGTCCCAGGTTTGTTCTGTTTAG
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