mRNA_H-paniculata_contig4252.10866.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4252.10866.1
Unique NamemRNA_H-paniculata_contig4252.10866.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4252.10866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4252contigH-paniculata_contig4252:10966..11365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size400
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4252.10866.1prot_H-paniculata_contig4252.10866.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4252 10977..11315 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930292.6454852-UTR-H-paniculata_contig4252:10965..109761622930292.6454852-UTR-H-paniculata_contig4252:10965..10976Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4252 10966..10976 +
1691481228.3934073-UTR-H-paniculata_contig4252:10965..109761691481228.3934073-UTR-H-paniculata_contig4252:10965..10976Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4252 10966..10976 +
1622930292.692669-UTR-H-paniculata_contig4252:11315..113651622930292.692669-UTR-H-paniculata_contig4252:11315..11365Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4252 11316..11365 +
1691481228.4152792-UTR-H-paniculata_contig4252:11315..113651691481228.4152792-UTR-H-paniculata_contig4252:11315..11365Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4252 11316..11365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930292.6621702-CDS-H-paniculata_contig4252:10976..113151622930292.6621702-CDS-H-paniculata_contig4252:10976..11315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4252 10977..11315 +
1691481228.4068613-CDS-H-paniculata_contig4252:10976..113151691481228.4068613-CDS-H-paniculata_contig4252:10976..11315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4252 10977..11315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4252.10866.1

>prot_H-paniculata_contig4252.10866.1 ID=prot_H-paniculata_contig4252.10866.1|Name=mRNA_H-paniculata_contig4252.10866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MKNKKMLCISISITEYRHGLTFQDVIRHEDRNRNCPCSVPTNMIRCKTGP
AQDIGSMTSPVPTLALLLPPASRPRAPLFFRGTFGIGANALTSLTRICRH
AFRFSPGRRRYQ*
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mRNA from alignment at H-paniculata_contig4252:10966..11365+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4252.10866.1 ID=mRNA_H-paniculata_contig4252.10866.1|Name=mRNA_H-paniculata_contig4252.10866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=400bp|location=Sequence derived from alignment at H-paniculata_contig4252:10966..11365+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAATACATGTAATGAAAAACAAAAAAATGTTGTGTATTTCTATCTCGATT
ACAGAATATCGTCATGGCCTTACATTCCAAGACGTCATTAGACATGAAGA
CCGGAATCGGAACTGCCCTTGCTCTGTTCCCACCAACATGATAAGATGTA
AAACGGGGCCCGCTCAGGATATCGGTTCAATGACCTCTCCAGTGCCCACA
CTAGCGCTGCTTCTCCCACCAGCGTCACGACCTCGAGCTCCGTTATTCTT
TCGCGGCACCTTTGGCATTGGCGCCAACGCCCTCACTTCCTTAACCCGCA
TTTGCCGGCATGCTTTTCGATTTTCTCCAGGTCGGCGTCGTTATCAATGA
AGCGCTTCGGGAGGTAGTTCCTGGTTTCCTTCCTCGAAAGTTGCAGCATG
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Coding sequence (CDS) from alignment at H-paniculata_contig4252:10966..11365+

>mRNA_H-paniculata_contig4252.10866.1 ID=mRNA_H-paniculata_contig4252.10866.1|Name=mRNA_H-paniculata_contig4252.10866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig4252:10966..11365+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAACAAAAAAATGTTGTGTATTTCTATCTCGATTACAGAATATCG
TCATGGCCTTACATTCCAAGACGTCATTAGACATGAAGACCGGAATCGGA
ACTGCCCTTGCTCTGTTCCCACCAACATGATAAGATGTAAAACGGGGCCC
GCTCAGGATATCGGTTCAATGACCTCTCCAGTGCCCACACTAGCGCTGCT
TCTCCCACCAGCGTCACGACCTCGAGCTCCGTTATTCTTTCGCGGCACCT
TTGGCATTGGCGCCAACGCCCTCACTTCCTTAACCCGCATTTGCCGGCAT
GCTTTTCGATTTTCTCCAGGTCGGCGTCGTTATCAATGAATGAAAAACAA
AAAAATGTTGTGTATTTCTATCTCGATTACAGAATATCGTCATGGCCTTA
CATTCCAAGACGTCATTAGACATGAAGACCGGAATCGGAACTGCCCTTGC
TCTGTTCCCACCAACATGATAAGATGTAAAACGGGGCCCGCTCAGGATAT
CGGTTCAATGACCTCTCCAGTGCCCACACTAGCGCTGCTTCTCCCACCAG
CGTCACGACCTCGAGCTCCGTTATTCTTTCGCGGCACCTTTGGCATTGGC
GCCAACGCCCTCACTTCCTTAACCCGCATTTGCCGGCATGCTTTTCGATT
TTCTCCAGGTCGGCGTCGTTATCAATGA
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