mRNA_H-paniculata_contig4252.10868.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4252.10868.1
Unique NamemRNA_H-paniculata_contig4252.10868.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4252.10868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4252contigH-paniculata_contig4252:14048..14638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size218
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930292.568886-CDS-H-paniculata_contig4252:14048..140741622930292.568886-CDS-H-paniculata_contig4252:14048..14074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4252 14049..14074 -
1691481228.371267-CDS-H-paniculata_contig4252:14048..140741691481228.371267-CDS-H-paniculata_contig4252:14048..14074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4252 14049..14074 -
1622930292.581926-CDS-H-paniculata_contig4252:14448..146381622930292.581926-CDS-H-paniculata_contig4252:14448..14638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4252 14449..14638 -
1691481228.3798869-CDS-H-paniculata_contig4252:14448..146381691481228.3798869-CDS-H-paniculata_contig4252:14448..14638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4252 14449..14638 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4252.10868.1prot_H-paniculata_contig4252.10868.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4252 14049..14638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4252.10868.1

>prot_H-paniculata_contig4252.10868.1 ID=prot_H-paniculata_contig4252.10868.1|Name=mRNA_H-paniculata_contig4252.10868.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
FDTKKTPSSACPAPVTPTSTFAIYTTSRITAPRSNERMPRWWRMALQLQQ
ARHCVGFTEENILGRHGQSKRE
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mRNA from alignment at H-paniculata_contig4252:14048..14638-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4252.10868.1 ID=mRNA_H-paniculata_contig4252.10868.1|Name=mRNA_H-paniculata_contig4252.10868.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=591bp|location=Sequence derived from alignment at H-paniculata_contig4252:14048..14638- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGACACGAAGAAAACACCGTCGAGTGCATGTCCAGCACCAGTAACGCC
AACAAGCACGTTCGCGATATACACAACATCCAGGATCACCGCGCCAAGGT
CCAACGAGAGAATGCCCAGATGGTGGCGGATGGCGTTACAGCTACAACAG
GCCAGGCACTGTGTGGGCTTTACAGAAGAAAACATCCTAGGTTTGTATAC
GACGCGACGTAAGGTATAAGGCATGATAACATCAGTAAGCTCAACCTTTG
ATTTTTTTTTTATGCATCCAATGGCCCCATCAGCCACCACGTTCAGCTTT
TTTATACGCAAACAGTAATGAGTACTGTACAGTATTGCACTGCACGGAAG
TAAAGCCAGTTATCGCGATGCCTTTTACCTGTTGATGCTGGTTATGAGGA
CAACGCGCAGCGGCTACCCCCGGTAGTCGTGATGTCAATTTTGCGTTCAG
CCAGTTAGATGCTTCCAAACAAAAAACGTGACTCCAACAGTGCTGCTTGT
CAGCATTGGCTAAGTTCGGTTGCGACTTGGACCGTTCGACCGTTGCGGCC
CCGAAATTAAGCAGGTCGTCATGGACAGTCTAAGAGAGAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig4252:14048..14638-

>mRNA_H-paniculata_contig4252.10868.1 ID=mRNA_H-paniculata_contig4252.10868.1|Name=mRNA_H-paniculata_contig4252.10868.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig4252:14048..14638- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGACACGAAGAAAACACCGTCGAGTGCATGTCCAGCACCAGTAACGCC
AACAAGCACGTTCGCGATATACACAACATCCAGGATCACCGCGCCAAGGT
CCAACGAGAGAATGCCCAGATGGTGGCGGATGGCGTTACAGCTACAACAG
GCCAGGCACTGTGTGGGCTTTACAGAAGAAAACATCCTAGTTCGACACGA
AGAAAACACCGTCGAGTGCATGTCCAGCACCAGTAACGCCAACAAGCACG
TTCGCGATATACACAACATCCAGGATCACCGCGCCAAGGTCCAACGAGAG
AATGCCCAGATGGTGGCGGATGGCGTTACAGCTACAACAGGCCAGGCACT
GTGTGGGCTTTACAGAAGAAAACATCCTAGGTCGTCATGGACAGTCTAAG
AGAGAAGTCGTCATGGACAGTCTAAGAGAGAA
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