mRNA_H-paniculata_contig4251.10862.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4251.10862.1
Unique NamemRNA_H-paniculata_contig4251.10862.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Match: D7FQY5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQY5_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 8.500e-57
Identity = 93/181 (51.38%), Postives = 124/181 (68.51%), Query Frame = 1
Query:    1 PKILSGCLHTVCQSCAEEAFQRSDSPTVLPCPICSVSTIGVSTTSSLTDNVMALQDVKRWSRNCEFCNEVVRASHRCVDCQSIICGFHLKHHTRSRATKAHKILPLKARGLGNIPPLASPASKPYNVPIFCPRHDGVLVKLFCSEPCGQLICYDCSVAEHSGHSIFLADSPEVEVTHRTRL 543
            PK+L GCLHT+CQ+CAEE  QRS   + + CP+C VST  V++TS+L DN++ALQDV R + +C+FC++V +ASH C +C S++C FH+  H+ SR TK+H+++ LK R               + V I C RH  V  KLFCSEPCG  IC++CSVAEHSGHS+F +DS EVE  HR  L
Sbjct:   36 PKVLKGCLHTICQNCAEEGLQRSKDGSSIMCPLCGVSTSDVTSTSALQDNIVALQDVHRKNSHCDFCDDVAKASHVCHECASLLCTFHMTAHSVSRGTKSHRVVSLKNREAS------------HRVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEHSGHSVFFSDSAEVEQVHRAGL 204          
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Match: A0A8J1Y5Q6_OWEFU (Ofus.G151695 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1Y5Q6_OWEFU)

HSP 1 Score: 67.0 bits (162), Expect = 1.010e-9
Identity = 56/181 (30.94%), Postives = 82/181 (45.30%), Query Frame = 1
Query:    1 PKILSGCLHTVCQSCAEEAFQ--RSDSPTVLPCPICS---------VSTIGVSTTSSLTDNVMALQDVKRWSRN--CEFC---NEVVRASHRCVDCQSIICGFHLKHHTRSRATKAHKILPLKARGLGNIPPLASPASKPY-NVPIFCPRHDGVLVKLFCSEPCGQLICYDCSVAEHSGHS 492
            PK ++ C H+ C+ C  +  +  ++      PCP+C+             G + T      ++  Q  K  +RN  C+ C    E V A  RCV+C   +C    K H RSRAT++H I  L     G+    A  A   Y    I CP+H    ++ FC +    +IC DCS+ EH GHS
Sbjct:   30 PKSIT-CGHSFCKGCIGKWMKEHKAKGNDRYPCPVCNEQLEIPKNGADAYGTNITIKSMVEILENQLTKGQNRNVNCDICIQEGEAVPAMSRCVECAEHMCKHCNKAHRRSRATQSHTIYGLT----GDAEKDARAALDNYIKRNIECPKHPDQPLRFFCKQD-KAVICRDCSITEHPGHS 204          
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Match: A0A8J9ZR80_BRALA (TRIM3 protein n=2 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZR80_BRALA)

HSP 1 Score: 63.2 bits (152), Expect = 2.350e-8
Identity = 42/163 (25.77%), Postives = 70/163 (42.94%), Query Frame = 1
Query:    1 PKILSGCLHTVCQSCAEEAFQRSDSPTVLPCPICSVSTIGVSTTSSLTDNVMALQDVK--------RWSRNCEFCNEVVRASHRCVDCQSIICGFHLKHHTRSRATKAHKILPLKARGLGNIPPLASPASKPYNVPIFCPRHDGVLVKLFCSEPCGQLICYDC 465
            PK+L  CLHT C++C  +  + ++   V  CP+ +           L DNV+    +         + S  C  C+ ++ ASHRC+DCQ  +C      H   +  + H++  +                +    P++C +H G  ++LFC E  G L C  C
Sbjct:   22 PKLLP-CLHTFCETCIFKVREGTEKGKVFSCPVETCKEEVAKGEDDLQDNVLVANIINAKSVACATKGSVKCTSCDNLLEASHRCLDCQRFLCVNCHAAHKHMQIFRRHRMQDISE---------FFRQQQAQKRPLYCTKHQGETLELFC-ETSGMLCCTKC 173          
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Match: A0A0F8B4S9_LARCR (Tripartite motif-containing protein 16 n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A0F8B4S9_LARCR)

HSP 1 Score: 59.7 bits (143), Expect = 3.570e-7
Identity = 48/184 (26.09%), Postives = 73/184 (39.67%), Query Frame = 1
Query:   19 CLHTVCQSCAEEAFQRSDSPTVLPCPICSVSTIGVSTTSSLTDNVMALQDVKRWS---------------RNCEFCN-EVVRASHRCVDCQSIICGFHLKHHTRSRATKAHKILPLKARGLGNIPPLASPASKPYNVPIFCPRHDGVLVKLFCSEPCGQLICYDCSVAEHSGHSIFLADSPEVE 522
            C H+ C +C +  +   D   +  CP C  + I        T     ++D+K+                  +C+FC    ++A   C+ CQ   C  HL+ H  S A   HK++    +   NI                C  H+ V+ K+FC     Q ICY CS+ EH GH I +A+    E
Sbjct:   29 CGHSYCMNCIKSHWDEEDQKEIHSCPQCRQTFIPRPVLVKNTMLADLVEDLKKTGLQAAPADQCYAGPEDESCDFCTGRKLKAVKSCLQCQVSYCEQHLQPHYESPAFDKHKLVDPSKKLQENI----------------CSWHNEVM-KIFCRTD-QQCICYLCSMDEHKGHDIVVAEGERTE 194          
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Match: UPI0016044AEC (E3 ubiquitin-protein ligase TRIM33-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016044AEC)

HSP 1 Score: 58.5 bits (140), Expect = 5.060e-7
Identity = 40/165 (24.24%), Postives = 72/165 (43.64%), Query Frame = 1
Query:    1 PKILSGCLHTVCQSCAEEAFQRSDSPT--VLPCPICSVSTIGVSTTSSLTDNVMALQDVK--------RWSRNCEFCNEVVRASHRCVDCQSIICGFHLKHHTRSRATKAHKILPLKARGLGNIPPLASPASKPYNVPIFCPRHDGVLVKLFCSEPCGQLICYDC 465
            PK+L  CLHT C++C  +  + +++    V  CP+ +           L DN++    +         + +  C  C+ ++ ASHRC+DCQ  +C      H   +  + H++  +                +    P++C +H G +++LFC E  G L C  C
Sbjct:   22 PKLLP-CLHTFCETCIFKVQEGTENEKGKVFSCPVETCKEEVAKGEDDLPDNILVANIINAKSVACAAKGTVKCTSCDNLLEASHRCLDCQRFLCVNCHAAHKHMQIFRRHRMQDISEFFC---------QQQAQKRPLYCTKHQGEILELFC-ETSGMLCCSKC 175          
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Match: UPI000F5DED6C (tripartite motif-containing protein 16-like n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI000F5DED6C)

HSP 1 Score: 58.9 bits (141), Expect = 5.520e-7
Identity = 48/184 (26.09%), Postives = 73/184 (39.67%), Query Frame = 1
Query:   19 CLHTVCQSCAEEAFQRSDSPTVLPCPICSVSTIGVSTTSSLTDNVMALQDVKRWSR---------------NCEFCN-EVVRASHRCVDCQSIICGFHLKHHTRSRATKAHKILPLKARGLGNIPPLASPASKPYNVPIFCPRHDGVLVKLFCSEPCGQLICYDCSVAEHSGHSIFLADSPEVE 522
            C H+ C +C +  +   D   +  CP C  + I        T     ++D+K+                  +C+FC    ++A   C+ CQ   C  HL+ H  S A   HK++    +   NI                C  H+ V+ K+FC     Q ICY CS+ EH GH I +A+    E
Sbjct:   29 CGHSYCMNCIKSHWDEEDQKEIHSCPQCRQTFIPRPVLVKNTMLADLVEDLKKTGLQAAPADQCYAGPEDVSCDFCTGRKLKAVKSCLQCQVSYCEQHLQPHYESPAFDKHKLVDPSKKLQENI----------------CSWHNEVM-KIFCRTD-QQCICYLCSMDEHKGHDIVVAEGERTE 194          
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Match: UPI001604104B (tripartite motif-containing protein 3-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001604104B)

HSP 1 Score: 58.5 bits (140), Expect = 8.790e-7
Identity = 40/165 (24.24%), Postives = 72/165 (43.64%), Query Frame = 1
Query:    1 PKILSGCLHTVCQSCAEEAFQRSDSPT--VLPCPICSVSTIGVSTTSSLTDNVMALQDVK--------RWSRNCEFCNEVVRASHRCVDCQSIICGFHLKHHTRSRATKAHKILPLKARGLGNIPPLASPASKPYNVPIFCPRHDGVLVKLFCSEPCGQLICYDC 465
            PK+L  CLHT C++C  +  + +++    V  CP+ +           L DN++    +         + +  C  C+ ++ ASHRC+DCQ  +C      H   +  + H++  +                +    P++C +H G +++LFC E  G L C  C
Sbjct:   22 PKLLP-CLHTFCETCIFKVQEGTENEKGKVFSCPVETCKEEVAKGEDDLPDNILVANIINAKSVACAAKGTVKCTSCDNLLEASHRCLDCQRFLCVNCHAAHKHMQIFRRHRMQDISEFFC---------QQQAQKRPLYCTKHQGEILELFC-ETSGMLCCSKC 175          
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Match: UPI001884DC3C (E3 ubiquitin-protein ligase TRIM33-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884DC3C)

HSP 1 Score: 53.5 bits (127), Expect = 4.710e-5
Identity = 45/178 (25.28%), Postives = 71/178 (39.89%), Query Frame = 1
Query:    1 PKILSGCLHTVCQSCAEEAFQRSDSPTVLPCPICSVSTIGVSTTSSLTDNVMALQDVKRWSRNCEFCNEV---VRASHRCVDCQSIICGFHLKHHTRSRATKAHKILPLKARGLGNIPPLASPASKPYNVPIFCPRHDGVLVKLFCSEPCGQLICYDCSVAEHSGHSIFLADSPEVEV 525
            PK+L+GCLHTVC  C ++          L C IC  S+  +     L   ++  Q   + SR C  C E      A+  C +C + +C   ++ H R+R T  H+I   +     ++                CP+H       +C + C  + C DC +  H  H        + EV
Sbjct:   38 PKLLTGCLHTVCAPCGQQCNSGG-----LECQICMTSSPTL-LDHPLVQELLQQQHEGQGSRLCGQCTERGSRAAAAGTCDECSTDLCTVCIQAHQRTRVTWDHRIAMHQDTATDDL----------------CPKHQKTYDN-YC-DTCRTVGCGDCILFSHRSHKSRTLQEKDAEV 191          
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Match: UPI0018855882 (E3 ubiquitin-protein ligase TRIM33-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018855882)

HSP 1 Score: 53.1 bits (126), Expect = 5.710e-5
Identity = 49/186 (26.34%), Postives = 77/186 (41.40%), Query Frame = 1
Query:    1 PKILSGCLHTVCQSCAEEAFQRSDSPTVLPCPICSVSTIGVSTTSSLTDNVMALQDVKRWSRNCEFCNE---VVRASHRCVDCQSIICGFHLKHHTRSRATKAHKILPLKARGLGNIPPLASPASKPYNVPIFCPRHDGVLVKLFCSEPCGQLICYDCSVAEHSGHS--IFLADSPEVEVTHRTRL 543
            PK+L+GCLHTVC  CA++            C +C  S+  +     L + ++  Q  ++ SR C  C E      AS  C +C + +C   ++ H  ++ T  H           NI       ++       C  H       +C + C  L C +C ++ H  H     LA   EV+ T +TRL
Sbjct:   89 PKLLTGCLHTVCAPCAQQCSSAG-----FQCQLCMTSSPSL-LDHPLVEELLQRQHEEQRSRLCGQCAERGGQAAASGTCTECSTDLCNVCIQAHRVTKPTWGH-----------NIDVCQDSCAQQQ-----CSSHYKTFDN-YC-DTCNTLGCGECILSAHRSHQSCTLLAKDAEVKETLKTRL 250          
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Match: UPI001C920A7D (mucin-19-like n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C920A7D)

HSP 1 Score: 52.8 bits (125), Expect = 9.160e-5
Identity = 46/178 (25.84%), Postives = 74/178 (41.57%), Query Frame = 1
Query:    1 PKILSGCLHTVCQSCAEEAFQRSDSPTVLPCPICSVSTIGVSTTSSLTDNVMALQDVKRWSRNCEFCNEVVR---ASHRCVDCQSIICGFHLKHHTRSRATKAHKILPLKARGLGNIPPLASPASKPYNVPIFCPRHDGVLVKLFCSEPCGQLICYDCSVAEHSGHSIFLADSPEVEV 525
            P++L GCLHTVC SCA      S +P    C +C   +  V     L + ++  + V++ SR C  C E  R   A+  C +C + +C   ++ H +++ T  H I                 A    +    CP H       +C + C  + C DC ++ H  H     +  + EV
Sbjct:   61 PRLLPGCLHTVCGSCAGNL---SSNPDGFQCRLCMTKSAEV-LDHPLVEELLQREHVQQCSRLCGQCGERGREAIAAGACAECCTELCQDCIEAHNQTKLTWDHSIT----------------AYNDDSAHQRCPEHRKAYDN-YC-DTCQTVGCGDCILSSHRSHKSSTLEHKQAEV 216          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4251.10862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FQY5_ECTSI8.500e-5751.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J1Y5Q6_OWEFU1.010e-930.94Ofus.G151695 protein n=1 Tax=Owenia fusiformis Tax... [more]
A0A8J9ZR80_BRALA2.350e-825.77TRIM3 protein n=2 Tax=Branchiostoma lanceolatum Ta... [more]
A0A0F8B4S9_LARCR3.570e-726.09Tripartite motif-containing protein 16 n=1 Tax=Lar... [more]
UPI0016044AEC5.060e-724.24E3 ubiquitin-protein ligase TRIM33-like n=1 Tax=Br... [more]
UPI000F5DED6C5.520e-726.09tripartite motif-containing protein 16-like n=1 Ta... [more]
UPI001604104B8.790e-724.24tripartite motif-containing protein 3-like n=1 Tax... [more]
UPI001884DC3C4.710e-525.28E3 ubiquitin-protein ligase TRIM33-like n=1 Tax=Po... [more]
UPI00188558825.710e-526.34E3 ubiquitin-protein ligase TRIM33-like n=1 Tax=Po... [more]
UPI001C920A7D9.160e-525.84mucin-19-like n=1 Tax=Amphibalanus amphitrite TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4251contigH-paniculata_contig4251:2350..2892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.6
Seed ortholog evalue5e-48
Seed eggNOG ortholog2880.D7FQY5
KEGG koko:K08883
Hectar predicted targeting categoryother localisation
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG2177@1,KOG2177@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko04121
Exons1
Model size543
Cds size543
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930292.1531408-CDS-H-paniculata_contig4251:2349..28921622930292.1531408-CDS-H-paniculata_contig4251:2349..2892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4251 2350..2892 -
1691481228.2209327-CDS-H-paniculata_contig4251:2349..28921691481228.2209327-CDS-H-paniculata_contig4251:2349..2892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4251 2350..2892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4251.10862.1prot_H-paniculata_contig4251.10862.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4251 2350..2892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4251.10862.1

>prot_H-paniculata_contig4251.10862.1 ID=prot_H-paniculata_contig4251.10862.1|Name=mRNA_H-paniculata_contig4251.10862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=181bp
PKILSGCLHTVCQSCAEEAFQRSDSPTVLPCPICSVSTIGVSTTSSLTDN
VMALQDVKRWSRNCEFCNEVVRASHRCVDCQSIICGFHLKHHTRSRATKA
HKILPLKARGLGNIPPLASPASKPYNVPIFCPRHDGVLVKLFCSEPCGQL
ICYDCSVAEHSGHSIFLADSPEVEVTHRTRL
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mRNA from alignment at H-paniculata_contig4251:2350..2892-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4251.10862.1 ID=mRNA_H-paniculata_contig4251.10862.1|Name=mRNA_H-paniculata_contig4251.10862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=543bp|location=Sequence derived from alignment at H-paniculata_contig4251:2350..2892- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAAGATTCTGTCGGGCTGCCTGCACACAGTTTGCCAATCATGCGCGGA AGAAGCGTTTCAACGATCGGACTCACCTACCGTGCTCCCTTGCCCGATAT GCTCAGTCTCAACCATTGGAGTTTCTACAACATCATCGTTAACGGACAAC GTTATGGCGTTGCAAGACGTCAAGCGGTGGTCGAGAAACTGCGAATTCTG CAACGAGGTCGTCCGTGCATCGCATCGCTGCGTCGACTGCCAGAGCATCA TCTGCGGGTTTCACCTCAAGCATCACACTCGTTCCCGCGCGACGAAGGCA CACAAGATTTTGCCTCTAAAAGCACGGGGACTCGGGAACATTCCCCCGTT GGCCTCGCCGGCCTCCAAGCCATATAATGTTCCCATATTTTGCCCTCGAC ATGACGGTGTGCTAGTCAAACTGTTCTGCTCGGAGCCCTGTGGGCAATTG ATCTGTTACGATTGCAGCGTGGCAGAGCATTCGGGCCATTCCATTTTCCT GGCTGATTCGCCCGAAGTTGAGGTGACACATCGCACACGATTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4251:2350..2892-

>mRNA_H-paniculata_contig4251.10862.1 ID=mRNA_H-paniculata_contig4251.10862.1|Name=mRNA_H-paniculata_contig4251.10862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at H-paniculata_contig4251:2350..2892- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAAGATTCTGTCGGGCTGCCTGCACACAGTTTGCCAATCATGCGCGGA
AGAAGCGTTTCAACGATCGGACTCACCTACCGTGCTCCCTTGCCCGATAT
GCTCAGTCTCAACCATTGGAGTTTCTACAACATCATCGTTAACGGACAAC
GTTATGGCGTTGCAAGACGTCAAGCGGTGGTCGAGAAACTGCGAATTCTG
CAACGAGGTCGTCCGTGCATCGCATCGCTGCGTCGACTGCCAGAGCATCA
TCTGCGGGTTTCACCTCAAGCATCACACTCGTTCCCGCGCGACGAAGGCA
CACAAGATTTTGCCTCTAAAAGCACGGGGACTCGGGAACATTCCCCCGTT
GGCCTCGCCGGCCTCCAAGCCATATAATGTTCCCATATTTTGCCCTCGAC
ATGACGGTGTGCTAGTCAAACTGTTCTGCTCGGAGCCCTGTGGGCAATTG
ATCTGTTACGATTGCAGCGTGGCAGAGCATTCGGGCCATTCCATTTTCCT
GGCTGATTCGCCCGAAGTTGAGGTGACACATCGCACACGATTGCCCAAGA
TTCTGTCGGGCTGCCTGCACACAGTTTGCCAATCATGCGCGGAAGAAGCG
TTTCAACGATCGGACTCACCTACCGTGCTCCCTTGCCCGATATGCTCAGT
CTCAACCATTGGAGTTTCTACAACATCATCGTTAACGGACAACGTTATGG
CGTTGCAAGACGTCAAGCGGTGGTCGAGAAACTGCGAATTCTGCAACGAG
GTCGTCCGTGCATCGCATCGCTGCGTCGACTGCCAGAGCATCATCTGCGG
GTTTCACCTCAAGCATCACACTCGTTCCCGCGCGACGAAGGCACACAAGA
TTTTGCCTCTAAAAGCACGGGGACTCGGGAACATTCCCCCGTTGGCCTCG
CCGGCCTCCAAGCCATATAATGTTCCCATATTTTGCCCTCGACATGACGG
TGTGCTAGTCAAACTGTTCTGCTCGGAGCCCTGTGGGCAATTGATCTGTT
ACGATTGCAGCGTGGCAGAGCATTCGGGCCATTCCATTTTCCTGGCTGAT
TCGCCCGAAGTTGAGGTGACACATCGCACACGATTG
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