mRNA_H-paniculata_contig4250.10860.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4250.10860.1
Unique NamemRNA_H-paniculata_contig4250.10860.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4250.10860.1 vs. uniprot
Match: D7FI94_ECTSI (Intrafragellar transpot 52, osm-6-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI94_ECTSI)

HSP 1 Score: 426 bits (1096), Expect = 1.090e-142
Identity = 206/241 (85.48%), Postives = 226/241 (93.78%), Query Frame = 1 
Query:    1 EAAPASEPSAPKGPGRLLVVASSDVFADSWLDKEENAKLCDVLVRWLLAEAGIKLSRKREYNITESRRVPNTESLADRLRCCLQESESLPKNFTKLFNDSLFGFDTKMIPEAVEAFSALGVKHEPLTLIPPAFEAPLPQLSGSVFPPILRDPPPPALDRFDLDEHFASDRIRLAQITNKCTTSDLEYYVRECGEIMGVTGLLAEDSPLSAGPIGILDHVFKKLIRYKMLNQEEGALDALPQ 723
            EAAPASEP+  KGPGRLLVVASSD+FAD WLDKEENAKLCDV +RWLL EAG++L R+REY +++SRRVPNTESLADRLRCCLQESESLPKNFTKLFNDSLFGFDTKMIPE VEAFS LGVKHEPLTLIPPAFE PLPQLS +VFPPI+R+PPPPALDRFDLDEHFASDRIRLAQITNKCT SDLEYYVRECGEIMGVTG L+E+SP S GP+G+LDHVFK+LIR+KMLNQEEGA+DALP+
Sbjct:  298 EAAPASEPAVRKGPGRLLVVASSDIFADPWLDKEENAKLCDVFMRWLLGEAGVRLPRRREYEVSDSRRVPNTESLADRLRCCLQESESLPKNFTKLFNDSLFGFDTKMIPETVEAFSLLGVKHEPLTLIPPAFECPLPQLSAAVFPPIMREPPPPALDRFDLDEHFASDRIRLAQITNKCTPSDLEYYVRECGEIMGVTGELSEESPASNGPMGVLDHVFKRLIRFKMLNQEEGAMDALPR 538
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BLAST of mRNA_H-paniculata_contig4250.10860.1 vs. uniprot
Match: A0A6H5JN49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN49_9PHAE)

HSP 1 Score: 400 bits (1029), Expect = 1.940e-132
Identity = 207/300 (69.00%), Postives = 225/300 (75.00%), Query Frame = 1 
Query:    1 EAAPASEPSAPKGPGRLLVVASSDVFADSWLDKEENAKLCDVLVRWLLAEAGIKLSRKREYNITESRRVPNTESLADRLRCCLQESESLPKNFTKLFNDSLFGFDTKMIPEAVEAFSALGVKHEPLTLIPPAFEAPLPQLSGSVFPPILRDPPPPALDRFDLDEHFASDRIRLAQITNK-----------------------------------------------------------CTTSDLEYYVRECGEIMGVTGLLAEDSPLSAGPIGILDHVFKKLIRYKMLNQEEGALDALPQ 723
            EAAPASEP+  KGPGRLLVVASSD+FAD WLDKEENAKLCDV +RWLL E G++L R+REY ++ESRRVPNTESLADRLRCCLQESESLPKNFTKLFNDSLFGFDTKMIPE VEAFS LGVKHEPLTLIPPAFE PLPQLS +VFPPI+R+PPPPALDRFDLDEHFASDRIRLAQITNK                                                           CT SDLEYYVRECGEIMGVTG L+EDSP S GP+G+LDHVFK+LIR+KMLNQEEGA+DALP+
Sbjct:  257 EAAPASEPAVRKGPGRLLVVASSDIFADPWLDKEENAKLCDVFMRWLLGEVGVRLPRRREYGVSESRRVPNTESLADRLRCCLQESESLPKNFTKLFNDSLFGFDTKMIPETVEAFSLLGVKHEPLTLIPPAFECPLPQLSAAVFPPIMREPPPPALDRFDLDEHFASDRIRLAQITNKDKSTRGVPGNLRKLAATLNRDTAEVESGGTCVVSRMLDAFLLAMHTRRRTPRPGLRPTQCTPSDLEYYVRECGEIMGVTGELSEDSPASNGPMGVLDHVFKRLIRFKMLNQEEGAMDALPR 556
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BLAST of mRNA_H-paniculata_contig4250.10860.1 vs. uniprot
Match: A0A836CAI6_9STRA (Intrafragellar transport 52, osm-6-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI6_9STRA)

HSP 1 Score: 305 bits (780), Expect = 7.910e-97
Identity = 150/221 (67.87%), Postives = 181/221 (81.90%), Query Frame = 1 
Query:   37 GPGRLLVVASSDVFADSWLDKEENAKLCDVLVRWLLAEAGIKLSRKREYNITESRRVPNTESLADRLRCCLQESESLPKNFTKLFNDSLFGFDTKMIPEAVEAFSALGVKHEPLTLIPPAFEAPLPQLSGSVFPPILRDPPPPALDRFDLDEHFASDRIRLAQITNKCTTSD-LEYYVRECGEIMGVTGLLAEDSPLSAGPIGILDHVFKKLIRYKMLNQE 696
            GPGRLLVVAS+++F+D W+DKEEN KL DVLVRWLL E G+KL ++REY+I+E  RVPN+E+LADRLRCCLQE+E LP++FTKLFN++LF FD  +IPEAV  +  L VKHEPLTLIPP FE PLP L+ +VFPP  R+PPPP LD FDLDEHFASD IRLAQ+TNKC  SD LEYY++E GEI+GV G L E SP  A P  IL H+F++L+R+KMLNQE
Sbjct:  217 GPGRLLVVASTEMFSDEWIDKEENGKLWDVLVRWLLGEGGVKLDQQREYDISEYTRVPNSEALADRLRCCLQETEELPRDFTKLFNENLFKFDMDVIPEAVALYEQLDVKHEPLTLIPPTFECPLPPLNPAVFPPAPREPPPPPLDLFDLDEHFASDAIRLAQLTNKCAGSDDLEYYIKEGGEILGVIGELPEGSP--AEPKHILHHIFRRLVRFKMLNQE 435
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BLAST of mRNA_H-paniculata_contig4250.10860.1 vs. uniprot
Match: A0A7S2G7V8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7V8_9STRA)

HSP 1 Score: 268 bits (685), Expect = 3.110e-83
Identity = 136/225 (60.44%), Postives = 172/225 (76.44%), Query Frame = 1 
Query:   43 GRLLVVASSDVFADSWLDKEENAKLCDVLVRWLLAEAGIKLSRKREYNITESRRVPNTESLADRLRCCLQESESLPKNFTKLFNDSLFGFDTKMIPEAVEAFSALGVKHEPLTLIPPAFEAPLPQLSGSVFPPILRDPPPPALDRFDLDEHFASDRIRLAQITNKCTTS--DLEYYVRECGEIMGVTGLLAEDSPLSAGPIGILDHVFKKLIRYKMLNQEEGALD 711
            GR++VV+S  VF+D W+DKEEN+KL DVL RWL+ E  + L  +++  ++E  R+PNT+ LA+RLR CLQESE LPK+F KLFND+LF FDT +IPEAV  +  LGVKHEPL+LIPP FE PLP L+ +VFPP LR+ PPPALD+FDLDEHFAS R RLAQITNKCT S  DL+YYV+E GEI+GVT  L +D P       IL  +F++L+++K +NQE G LD
Sbjct:  247 GRVMVVSSLKVFSDEWIDKEENSKLADVLFRWLMQEKDVSLEDRKDAELSEYTRIPNTKVLAERLRSCLQESEELPKDFQKLFNDTLFKFDTNLIPEAVALYEQLGVKHEPLSLIPPQFETPLPPLNPAVFPPALRELPPPALDQFDLDEHFASPRQRLAQITNKCTGSADDLDYYVKESGEILGVTQQLGDD-PSQKTAKHILSFIFEELVKFKSVNQE-GPLD 469
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BLAST of mRNA_H-paniculata_contig4250.10860.1 vs. uniprot
Match: A0A7S3Y006_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y006_HETAK)

HSP 1 Score: 265 bits (676), Expect = 4.900e-83
Identity = 131/223 (58.74%), Postives = 167/223 (74.89%), Query Frame = 1 
Query:   49 LLVVASSDVFADSWLDKEENAKLCDVLVRWLLAEAGIKLSRKREYNITESRRVPNTESLADRLRCCLQESESLPKNFTKLFNDSLFGFDTKMIPEAVEAFSALGVKHEPLTLIPPAFEAPLPQLSGSVFPPILRDPPPPALDRFDLDEHFASDRIRLAQITNKCT-----TSDLEYYVRECGEIMGVTGLLAEDSPLSAGPIGILDHVFKKLIRYKMLNQEEG 702
            L+VV+S ++FAD WLDKEEN  L +VL+RWLL E G++L  +REY++ E +R P+TE++AD L+ CLQ++E LPKNFT LFND LF FDT +IPEAV  +  L VKHEPL+LIPP FE PLP L  +VFPP L++PP PALD+FDLDEHFAS+R+RLAQ+TNKC        DLEYYVR  GE++GV   L E       P GIL HVFK+++++K LNQ+ G
Sbjct:  137 LVVVSSVEIFADEWLDKEENQPLMEVLLRWLLHEGGVRLEPQREYDLAEYQRAPSTEAVADGLKSCLQDTEVLPKNFTLLFNDGLFKFDTDLIPEAVALYGRLHVKHEPLSLIPPQFECPLPPLQPAVFPPALQEPPAPALDQFDLDEHFASERVRLAQLTNKCAGGGGGEEDLEYYVRAAGEVLGVVAELPE---AQRTPKGILFHVFKQVVQFKKLNQDGG 356
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BLAST of mRNA_H-paniculata_contig4250.10860.1 vs. uniprot
Match: A0A6A3U2F0_9STRA (Intraflagellar transport protein 52 n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A6A3U2F0_9STRA)

HSP 1 Score: 258 bits (659), Expect = 2.910e-79
Identity = 123/220 (55.91%), Postives = 167/220 (75.91%), Query Frame = 1 
Query:   43 GRLLVVASSDVFADSWLDKEENAKLCDVLVRWLLAEAGIKLSRK--REYNITESRRVPNTESLADRLRCCLQESESLPKNFTKLFNDSLFGFDTKMIPEAVEAFSALGVKHEPLTLIPPAFEAPLPQLSGSVFPPILRDPPPPALDRFDLDEHFASDRIRLAQITNKCTTSDLEYYVRECGEIMGVTGLLAEDSPLSAGPIGILDHVFKKLIRYKMLNQE 696
            GRL+V  S+  F D W+DKEEN+KL +++ RWLL + GI+L+ +   + ++ E  R+P+T++L+DRLR C+QESE LPK+FT+LF+DSLF FDT +IPEAV  +  LGVKHEPLTLIPP FE PLP L  +VFPP LR+PPPPALD+FDLDEHFAS+ +RLAQ+TNKC+  DLEYYVRE  +I+G+   L    P  +    +L+ +F+K++ +K LNQ+
Sbjct:  202 GRLVVFGSAQCFVDEWIDKEENSKLQEIIFRWLLKDKGIRLNHQDAEDPDLNEYVRLPDTQALSDRLRSCMQESEELPKDFTRLFDDSLFKFDTSLIPEAVNLYRELGVKHEPLTLIPPQFECPLPPLKSAVFPPALREPPPPALDQFDLDEHFASESLRLAQLTNKCSDDDLEYYVRESADILGILPRL---DPERSDAKHVLEFIFQKIVNFKKLNQD 418
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BLAST of mRNA_H-paniculata_contig4250.10860.1 vs. uniprot
Match: H3GGX9_PHYRM (Uncharacterized protein n=21 Tax=Phytophthora TaxID=4783 RepID=H3GGX9_PHYRM)

HSP 1 Score: 258 bits (659), Expect = 7.580e-79
Identity = 123/220 (55.91%), Postives = 166/220 (75.45%), Query Frame = 1 
Query:   43 GRLLVVASSDVFADSWLDKEENAKLCDVLVRWLLAEAGIKLSRK--REYNITESRRVPNTESLADRLRCCLQESESLPKNFTKLFNDSLFGFDTKMIPEAVEAFSALGVKHEPLTLIPPAFEAPLPQLSGSVFPPILRDPPPPALDRFDLDEHFASDRIRLAQITNKCTTSDLEYYVRECGEIMGVTGLLAEDSPLSAGPIGILDHVFKKLIRYKMLNQE 696
            GRL+V  S+  F D W+DKEEN KL +++ RWLL + GIKL+ +   + ++ E  R+P+T++L+DRLR C+QESE LPK+FT+LF+D+LF FDT +IPEAV  +  LGVKHEPLTLIPP FE PLP L  +VFPP LR+PPPPALD+FDLDEHFAS+ +RLAQ+TNKC+  DLEYYVRE  +I+G+   L    P  +    +L+ +F+K++ +K LNQ+
Sbjct:  239 GRLIVFGSAQCFTDEWIDKEENTKLQEIIFRWLLKDKGIKLNHQDAEDPDLNEYVRLPDTQALSDRLRSCMQESEELPKDFTRLFDDALFKFDTSLIPEAVNLYRELGVKHEPLTLIPPQFECPLPPLKSAVFPPALREPPPPALDQFDLDEHFASESLRLAQLTNKCSDDDLEYYVRESADILGILPRL---DPERSDAKHVLEFIFQKIVNFKKLNQD 455
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BLAST of mRNA_H-paniculata_contig4250.10860.1 vs. uniprot
Match: A0A8J6CAD8_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CAD8_DIALT)

HSP 1 Score: 253 bits (647), Expect = 5.840e-78
Identity = 121/225 (53.78%), Postives = 164/225 (72.89%), Query Frame = 1 
Query:   43 GRLLVVASSDVFADSWLDKEENAKLCDVLVRWLLAEAGIKLSR--KREYNITESRRVPNTESLADRLRCCLQESESLPKNFTKLFNDSLFGFDTKMIPEAVEAFSALGVKHEPLTLIPPAFEAPLPQLSGSVFPPILRDPPPPALDRFDLDEHFASDRIRLAQITNKCTTSDLEYYVRECGEIMGVTGLLAEDSPLSAGPIGILDHVFKKLIRYKMLNQEEGALD 711
            GRL V+ SS +F D+W DK+EN KL +VLV+WLL   G+++      E  + E + VP+TESLA R+RCCL++SE + K+FT LF++SLF FDT +IPEAV+ +    VKHEPL+LIPP FE PLP L  +VFPP +R+PPPPALD FDLD+HFAS+R+RLA +TNKC+  DL+YY+RE G ++GVTG L  D   +     +L HVF +++ +K LNQE  A++
Sbjct:  212 GRLCVLGSSHIFEDAWFDKDENGKLAEVLVKWLLRADGVEMDPLDSDEIEVAEHKHVPDTESLAQRVRCCLEDSEEVTKDFTTLFDESLFKFDTSLIPEAVQLYKQFEVKHEPLSLIPPEFETPLPPLQPAVFPPSIREPPPPALDLFDLDDHFASERVRLAHLTNKCSEDDLDYYIREAGAVLGVTGSLPPDRRDARY---VLQHVFLQIVEWKKLNQEPEAME 433
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BLAST of mRNA_H-paniculata_contig4250.10860.1 vs. uniprot
Match: A0A0P1APT5_PLAHL (Intraflagellar transport protein 52 homolog n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1APT5_PLAHL)

HSP 1 Score: 253 bits (646), Expect = 3.750e-77
Identity = 128/233 (54.94%), Postives = 171/233 (73.39%), Query Frame = 1 
Query:    4 AAPASEPSAPKGPGRLLVVASSDVFADSWLDKEENAKLCDVLVRWLLAEAGIKLSRK--REYNITESRRVPNTESLADRLRCCLQESESLPKNFTKLFNDSLFGFDTKMIPEAVEAFSALGVKHEPLTLIPPAFEAPLPQLSGSVFPPILRDPPPPALDRFDLDEHFASDRIRLAQITNKCTTSDLEYYVRECGEIMGVTGLLAEDSPLSAGPIGILDHVFKKLIRYKMLNQE 696
            AAPAS+       GRL+V  S+  F D W+DKEENAKL +++ RWLL +  I L+ +   + ++ E  R+P+T++L+DRLR C+QESE LPK+FT+LF+DSLF FDT +IPEAV  +  LGVKHEPLTLIPP FE PLP L  +VFPP LR+PPPPALD+FDLDEHFAS+ +RLAQ+TNKC+  DLEYYVRE  +I+G+   L   +P  +    IL+ + +K++ +K LNQ+
Sbjct:  226 AAPASKS------GRLIVFGSTQCFVDEWIDKEENAKLQEIIFRWLLKDKTINLNHQDAEDPDLNEYVRLPDTQALSDRLRSCMQESEELPKDFTRLFDDSLFKFDTSLIPEAVNLYHDLGVKHEPLTLIPPQFECPLPPLKSAVFPPALREPPPPALDQFDLDEHFASETLRLAQLTNKCSDEDLEYYVRESADILGIMPRL---NPERSDAKHILEFITQKIVSFKKLNQD 449
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BLAST of mRNA_H-paniculata_contig4250.10860.1 vs. uniprot
Match: A0A7S2D5V8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D5V8_9STRA)

HSP 1 Score: 253 bits (647), Expect = 6.100e-77
Identity = 128/236 (54.24%), Postives = 172/236 (72.88%), Query Frame = 1 
Query:    1 EAAPASEPSAPKGPGRLLVVASSDVFADSWLDKEENAKLCDVLVRWLLAEAGIKLSRKREYNITESRRVPNTESLADRLRCCLQESESLPKNFTKLFNDSLFGFDTKMIPEAVEAFSALGVKHEPLTLIPPAFEAPLPQLSGSVFPPILRDPPPPALDRFDLDEHFASDRIRLAQITNKCTTSDLEYYVRECGEIMGVTGLLAEDSPLSAGPIGILDHVFKKLIRYKMLNQEEGAL 708
            E  P ++  A K PGR++V+ S  +F+D W+DKEEN KL DVLVRWLL E+G++L   ++ +++E  RVP+T+ LA R+R CLQE+E LPK+F KLFND LF FDT +IPEA+  +  LGVKHEP++LIPP FE PLP L+ +VF   LR+    ALD+FDLDEHFAS R RLAQ+TNKC   DL+YYV+ECG+I+GVT  L  DS        IL  VF++L+++K +NQ++ A+
Sbjct:  243 EPPPYTKRRARKTPGRVMVLGSLKMFSDEWIDKEENGKLSDVLVRWLLHESGVELHHVKDSDLSEYVRVPDTKVLATRIRSCLQENEELPKDFQKLFNDKLFKFDTHLIPEAIALYDKLGVKHEPMSLIPPQFETPLPPLAPAVFXXXLREXXXXALDQFDLDEHFASPRQRLAQLTNKCNPDDLDYYVKECGDIIGVTQALG-DSGKVVTAADILSFVFEELVKFKSVNQDDLAM 477
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4250.10860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI94_ECTSI1.090e-14285.48Intrafragellar transpot 52, osm-6-like protein n=1... [more]
A0A6H5JN49_9PHAE1.940e-13269.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CAI6_9STRA7.910e-9767.87Intrafragellar transport 52, osm-6-like protein (F... [more]
A0A7S2G7V8_9STRA3.110e-8360.44Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3Y006_HETAK4.900e-8358.74Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6A3U2F0_9STRA2.910e-7955.91Intraflagellar transport protein 52 n=3 Tax=Perono... [more]
H3GGX9_PHYRM7.580e-7955.91Uncharacterized protein n=21 Tax=Phytophthora TaxI... [more]
A0A8J6CAD8_DIALT5.840e-7853.78Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A0P1APT5_PLAHL3.750e-7754.94Intraflagellar transport protein 52 homolog n=1 Ta... [more]
A0A7S2D5V8_9STRA6.100e-7754.24Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4250contigH-paniculata_contig4250:5146..10025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score427.9
Seed ortholog evalue4e-117
Seed eggNOG ortholog2880.D7FI94
Preferred nameIFT52
KEGG koko:K19681
Hectar predicted targeting categoryother localisation
GOsGO:0001838,GO:0001841,GO:0001947,GO:0002009,GO:0003002,GO:0003007,GO:0003008,GO:0003143,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0005871,GO:0005875,GO:0005929,GO:0006810,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007507,GO:0007600,GO:0008022,GO:0008150,GO:0008285,GO:0009605,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009953,GO:0009987,GO:0010468,GO:0010970,GO:0015630,GO:0016043,GO:0016331,GO:0019222,GO:0021915,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030162,GO:0030326,GO:0030425,GO:0030705,GO:0030990,GO:0030992,GO:0031503,GO:0031514,GO:0032391,GO:0032501,GO:0032502,GO:0032991,GO:0035050,GO:0035107,GO:0035108,GO:0035113,GO:0035148,GO:0035239,GO:0035295,GO:0035720,GO:0035735,GO:0035869,GO:0036064,GO:0036477,GO:0040011,GO:0042073,GO:0042127,GO:0042221,GO:0042330,GO:0042733,GO:0042995,GO:0043005,GO:0043009,GO:0043025,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044292,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044782,GO:0046907,GO:0048513,GO:0048519,GO:0048523,GO:0048562,GO:0048568,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048736,GO:0048856,GO:0050678,GO:0050680,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051171,GO:0051179,GO:0051234,GO:0051246,GO:0051641,GO:0051649,GO:0051716,GO:0060173,GO:0060255,GO:0060271,GO:0060429,GO:0060562,GO:0061371,GO:0065007,GO:0070613,GO:0070887,GO:0070925,GO:0071840,GO:0072175,GO:0072359,GO:0080090,GO:0097447,GO:0097458,GO:0097542,GO:0097546,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902074,GO:1902075,GO:1903317,GO:1905515
EggNOG free text desc.intraciliary anterograde transport
EggNOG OGsKOG3861@1,KOG3861@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons5
Model size948
Cds size948
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4250.10860.1prot_H-paniculata_contig4250.10860.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4250 5146..10025 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930292.0043027-CDS-H-paniculata_contig4250:5145..52441622930292.0043027-CDS-H-paniculata_contig4250:5145..5244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4250 5146..5244 +
1691481228.1673923-CDS-H-paniculata_contig4250:5145..52441691481228.1673923-CDS-H-paniculata_contig4250:5145..5244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4250 5146..5244 +
1622930292.0294554-CDS-H-paniculata_contig4250:6016..61691622930292.0294554-CDS-H-paniculata_contig4250:6016..6169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4250 6017..6169 +
1691481228.1799817-CDS-H-paniculata_contig4250:6016..61691691481228.1799817-CDS-H-paniculata_contig4250:6016..6169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4250 6017..6169 +
1622930292.0435717-CDS-H-paniculata_contig4250:8091..83761622930292.0435717-CDS-H-paniculata_contig4250:8091..8376Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4250 8092..8376 +
1691481228.1891763-CDS-H-paniculata_contig4250:8091..83761691481228.1891763-CDS-H-paniculata_contig4250:8091..8376Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4250 8092..8376 +
1622930292.0576851-CDS-H-paniculata_contig4250:8729..88851622930292.0576851-CDS-H-paniculata_contig4250:8729..8885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4250 8730..8885 +
1691481228.1985044-CDS-H-paniculata_contig4250:8729..88851691481228.1985044-CDS-H-paniculata_contig4250:8729..8885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4250 8730..8885 +
1622930292.1020563-CDS-H-paniculata_contig4250:9770..100251622930292.1020563-CDS-H-paniculata_contig4250:9770..10025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4250 9771..10025 +
1691481228.2075036-CDS-H-paniculata_contig4250:9770..100251691481228.2075036-CDS-H-paniculata_contig4250:9770..10025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4250 9771..10025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4250.10860.1

>prot_H-paniculata_contig4250.10860.1 ID=prot_H-paniculata_contig4250.10860.1|Name=mRNA_H-paniculata_contig4250.10860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=316bp
EAAPASEPSAPKGPGRLLVVASSDVFADSWLDKEENAKLCDVLVRWLLAE
AGIKLSRKREYNITESRRVPNTESLADRLRCCLQESESLPKNFTKLFNDS
LFGFDTKMIPEAVEAFSALGVKHEPLTLIPPAFEAPLPQLSGSVFPPILR
DPPPPALDRFDLDEHFASDRIRLAQITNKCTTSDLEYYVRECGEIMGVTG
LLAEDSPLSAGPIGILDHVFKKLIRYKMLNQEEGALDALPQTSNSSTTTI
DRFGATVSSTIPGSLASGGSVSKNPGPAPGTALDNESAPPPSSDTTPRSS
VGNMTRRQNSSSSSAR
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mRNA from alignment at H-paniculata_contig4250:5146..10025+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4250.10860.1 ID=mRNA_H-paniculata_contig4250.10860.1|Name=mRNA_H-paniculata_contig4250.10860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4880bp|location=Sequence derived from alignment at H-paniculata_contig4250:5146..10025+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGCAGCGCCTGCTTCGGAGCCTTCTGCACCAAAGGGACCCGGCCGGCT
ACTCGTTGTGGCCTCAAGTGATGTATTTGCGGACTCATGGCTGGACAAGG
TGAGCACGGCCGATACTAGAAATACTATGCTCGCCGTTGGTTTACAGGAT
TTGTGAAAACACACACACACACACACATAGACACACAGATACACAACGCA
AATTTTTGGTCATTTTAGCGCTAGTTAGGGGGATCTAGTCGGTCGTTCCT
TCTACGCTTGTACGATAGCTATATTTTGTGTACAGTACATGATCCCTCTG
TCTCATTACAACCCACGATTGAGTTTTAAGATGGGTTTAACTTTTGATCG
AGAAGTCCAATTCAGAAACAGTTTTTTGCGTTGGTTTCCTTGCTACACTT
TCTGTCCAAGAAAGTCTACTTCATCTCAGTCCAATTTGTCCTTTTCCGAA
CAAGTGTCAAATTATGTTGCAGTGTATATATCAACCATAGGAAACTGAGC
AAATTTTTGCTAAAGGGATTCACATTCAACCGTTGGCGCAGCACTGATTG
CCAAGATCAGTCGTTCAAGGATCAAGCAGCATCTTAACGGGCTTAATTGC
TGGGCACGAGTGATACGACTACATCCTCTGGTAGCGCTCCAGGAGTCCAC
CTCCTAGTTTGGTCGGTTAATGGATAAGTAATCCAGCAGCTTGAAGATGG
TGATGCATACCTCCATTTTTTTCACTGGTATTGTCATATTTTCTGCAATA
ATTTGTCTCATTTTACTTTTGGACCGCTCTTTAATCTGTGGTACTCCCCC
CGCCCCCTCCCCCCGCTCCGCACCCCCACACATCTCATGCTTCACCCAAA
CACCATCCCTATTCCGGTCAGGAGGAAAACGCGAAGTTATGCGATGTGCT
AGTGAGGTGGTTGCTTGCCGAGGCCGGGATAAAACTGTCGAGAAAGAGAG
AATACAATATAACAGAGAGCAGGAGGGTGCCCAACACGGAATCTCTGGCG
GATCGGCTACGCTGCTGTCTCCAGGTAAGACAGAGTTGAAGGGAACACCA
TGCAATATTTATGGACGGGGGGACGTCGGAGGTCAAGTCACATCGTCCTA
ATTTTTGCTATGTCCAACCTCGGGGATTAACAGTGTCGGAGACTAGCAGT
GTCGGGGAGAGCTCTTTATTGCCTTCTTTGGATCGAGCGATGTCACGAGC
TATGTACGACATGTATGCCGGAAGTAGTATCGATTACCGGGGAAATCATC
GAGGGTAATTTTCCCATCTTCTCGATGAGTGAGTGGATTCTGTGTTTTTG
TGCGCATCGGTATAATACTCTATACCATGACATTCTTCCCGAAAAATCAT
CTGATTTTGCTTCGAGTTATCGTGTCGAAAGTTTGAATATTGGAGATTTT
GTACAGAACGCTGAACACAAAAATCATCAACATTTTGTTTCCAACACTTG
AAGCTGTCAGGTGTAGTGTCTCCGCCGTGTAATTTCTTCGTTCGACGTTT
TTGCAGCCCTTTTTTTCTGTTCGCGTAGCCACGAGAACAATACAACACCA
ACAGACTGACAGAGACAAAAAATTAATTCCGAATCACCCCTAAAGCTGAA
CTGGGCAAATATTGCCACAAACGCATATCAAAGAGGACACCCTGAAGAGA
CCACACGCCGTGCGCGATGGTGAAAGTAGCTATTTGTATTTCTATGTGCG
TGTTTCGAACCAGCTAATCGAAAACCTGAATCCGGTTATTGATGGAAGTA
CGTTACTTGCGTGTCATTGTTGCTGCTCTATGCAAGCAATTGCATTTTGT
CCAAATCATGCTATCTCAGATTCAAGGTAACTAACTTTCTTGCCCGCGGA
TTGCCCCTCACCACATTCTCGTTCATCGTATATTCCATTCTATTTATAAC
TTAATTACACACCCTTTCAAAGAGACCACTGTCACTGGAGCGAGAAAGAC
GTCATTCTCCCTACACATCTATGTTCATTTTTACCCATATTCCATCGTCT
ACTGCACGGTCAGTTAGTTAAGTGCCGTTTCCGAAAATCAATGGTTGTTC
CCTGTTTTGATATAATTTTACTGATAAATGGAGGCAACTGAAATTTGAGG
CCAGCTATATAACCTCAACAGAGGTATGATTAAATTCATTACATAGATTT
TATGGAGCTCCTACCTGTGGCAAGTGGGTGGACTCATGAATGCGGCTTCG
TGGGTAAGTTTATAGTTTTCATTTCTGTTAGGCGTCCAGGTGTGAGTCGT
GTTATCGACGGTTGCTCCCCCCCTCTCCCCCAGCAGCTTCAGTGTTATTG
GAAAGTCGTTTCAGCAGTGATGATTAACCGTTACATCGTCCGAATTCTTC
TCAACATCGACGTACTGTTACGGAGACACCCTTGTGATCCCCCCCAACCC
CCTGCCTCAATCGACTAGGTGGTCATGTCCCGCGTCTAGACACATTACTA
CATGATTATGCGCTAAATGACTTGGGCATAAACATGCATAAAAACAATAT
CTAAAACTCGTGCTGTGTATATATACATAGAAAAATTTTACGAACTTTAC
AATAAGGTACATCAATGTATTCGCTACGAGGTCCCGGGTTATCATGTGCC
TGTTTTTTGCTACGTTAATCTATCGTCTACTCGTTTTTGTTACACGCACT
AGAAAACGACACAGTTATGGTCGCTGGAAGATGTAGCATTTTTAACAGGC
CACGTGCTCTCTCCAGTCGGAGCTGTGAAACCAGTCGAGGAACTTGGTCA
CGAGCGAGACCAATTCTATTTCATTTTTTGACTTGGATGTTGATCGTAGC
TCGCTCAGCATAACACGTCGAGAGACGTTACCCGTCTGGTTAGATACCTC
CCCCCTTCCCCCCCCCGTGCGCACAAACCCAAGCCAATCCTTACCCAATC
CAATCCCCTACCTGCCACCTACATTGCCTTCTTCTACTTGCTTCAGGAGT
CGGAAAGCCTCCCGAAGAACTTCACGAAGCTCTTCAACGACTCGCTGTTC
GGGTTCGATACCAAAATGATCCCCGAAGCCGTGGAGGCGTTTTCGGCGCT
GGGGGTCAAGCACGAACCCCTCACGCTCATTCCCCCAGCGTTCGAGGCGC
CCCTACCGCAGCTCTCGGGCTCCGTGTTCCCTCCCATTCTCAGGGACCCG
CCTCCGCCGGCGCTGGATCGGTTCGACCTAGACGAACACTTCGCCAGTGA
CCGGATCCGGTTGGCACAGATCACCAACAAGGTGGGTGCGGGGGGGAGGG
AGAGGCAATAAAACCCTAAATTCCACTGACAGTTTACTCCTGTAGTACAC
ACGATATGCTCGTACGCCGTGTACTACTTGTCGTAACAGGTGGTGTCGAT
CACAAAGCGAGCTGTTACGTTTTCTTTCCTCCCTGGACCATCTTGAAAAC
AATCGTTTTCTTTCTTCTCCATTCCCATCTTTGACTTCTGGCGTCTGTTT
GTCGCCCATCTGCGCATCTCCTCTAAAATCGTGCATACGGGCTGCTGACA
ACAACCGATCTACGCAATTACGCGCTCGATAATCGCGTGATGCACAAATC
ATCTTTATTATCAACGGCAACAACAACAATACAGTGCACGACAAGCGACC
TCGAGTACTACGTTCGCGAGTGCGGGGAGATAATGGGCGTGACGGGGCTG
CTCGCCGAGGATTCACCTCTCTCTGCGGGTCCGATAGGAATCCTTGACCA
TGTGTTCAAGAAGCTCATCCGCTATAAAATGCTCAACCAGGCAAGAATGT
TTTTCCATGCGAAAAAACTACTGTTCCGTCGTTGTTGACCCCGTTTAATT
GGCGTCTACTCCTTGCGATAGAGGAGCACGTACGAGTGTTTTTCACGCAG
GAGAGTTGGTGCCCTGCAGTTTGCTACTGTTCCACGTGCACTACTGCTTC
GTTTCATCCAGCCATAGAGGCGTGGCATGTGGTGCGTGATTTCACGTGCG
GTTGTGCCTGTGTTTTTAGAAGCTTCTGTACTATATGCACGTGTTGAAGA
ACCCGCCTACTTCAAGATATTTAACCAGGTGTATATGTGAGTCTAGTGAA
CCGTATATATTGTAAGTAGTCTAGGTGGTGGGTAAACGTTAGCCAGGAAG
GTACCCTCACCACCGCCCCCACATACACTATGATTTGCCCTAAATCCACC
GAAAGTTCAACGTCTGGTTACCTGGTATGCCCAATAAACCCACAACGTAT
TTGGTTGGCCGTTTCAACACAGACAAGGGTCATAACCATGACTACAGTAC
CGTCTTGTACATATCAGCCTCGTAGAAAAACACGACAGCCTTATCCGGCG
AAAACTCTGGCACATCGCTCCATCCTAGCATTGCTGTGTACACGGTGATA
GGAGGTCGCTGGTCTGTGACTATATGACACCCTTTTTAGAGGTCATGCTC
CCCACCCCCTCAATCATCCGTCCTTTTGACGACGGGTGTGTTAGGTTAGA
TGCCATCTGTGTGCTATGCTCTTGTAGCCTTCAAAATATGCTACTTCGCA
GTGTTCTGACTGCTTGACAATGTTGCTTGACTAGATCTTCTGTAAATTCC
TAGCTAATAGCTTAGGGATGCGAAACACGAGTACCCCCCTCACCTGCTTA
CCCTTCCCCCACCCGGATCCACCAGGAGGAAGGCGCATTAGACGCTCTTC
CCCAAACCAGCAACAGTAGCACGACGACTATTGACCGCTTCGGGGCCACC
GTTTCCAGCACCATTCCTGGTTCCCTTGCCAGCGGCGGGAGCGTGAGCAA
AAACCCAGGACCCGCTCCGGGGACGGCTCTTGACAACGAATCTGCGCCGC
CACCATCGTCGGATACTACGCCAAGATCAAGCGTCGGCAACATGACAAGG
CGGCAAAATTCTTCATCTAGTAGCGCCCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig4250:5146..10025+

>mRNA_H-paniculata_contig4250.10860.1 ID=mRNA_H-paniculata_contig4250.10860.1|Name=mRNA_H-paniculata_contig4250.10860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1896bp|location=Sequence derived from alignment at H-paniculata_contig4250:5146..10025+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGCAGCGCCTGCTTCGGAGCCTTCTGCACCAAAGGGACCCGGCCGGCT
ACTCGTTGTGGCCTCAAGTGATGTATTTGCGGACTCATGGCTGGACAAGG
AAGCAGCGCCTGCTTCGGAGCCTTCTGCACCAAAGGGACCCGGCCGGCTA
CTCGTTGTGGCCTCAAGTGATGTATTTGCGGACTCATGGCTGGACAAGGA
GGAAAACGCGAAGTTATGCGATGTGCTAGTGAGGTGGTTGCTTGCCGAGG
CCGGGATAAAACTGTCGAGAAAGAGAGAATACAATATAACAGAGAGCAGG
AGGGTGCCCAACACGGAATCTCTGGCGGATCGGCTACGCTGCTGTCTCCA
GGAGGAAAACGCGAAGTTATGCGATGTGCTAGTGAGGTGGTTGCTTGCCG
AGGCCGGGATAAAACTGTCGAGAAAGAGAGAATACAATATAACAGAGAGC
AGGAGGGTGCCCAACACGGAATCTCTGGCGGATCGGCTACGCTGCTGTCT
CCAGGAGTCGGAAAGCCTCCCGAAGAACTTCACGAAGCTCTTCAACGACT
CGCTGTTCGGGTTCGATACCAAAATGATCCCCGAAGCCGTGGAGGCGTTT
TCGGCGCTGGGGGTCAAGCACGAACCCCTCACGCTCATTCCCCCAGCGTT
CGAGGCGCCCCTACCGCAGCTCTCGGGCTCCGTGTTCCCTCCCATTCTCA
GGGACCCGCCTCCGCCGGCGCTGGATCGGTTCGACCTAGACGAACACTTC
GCCAGTGACCGGATCCGGTTGGCACAGATCACCAACAAGGAGTCGGAAAG
CCTCCCGAAGAACTTCACGAAGCTCTTCAACGACTCGCTGTTCGGGTTCG
ATACCAAAATGATCCCCGAAGCCGTGGAGGCGTTTTCGGCGCTGGGGGTC
AAGCACGAACCCCTCACGCTCATTCCCCCAGCGTTCGAGGCGCCCCTACC
GCAGCTCTCGGGCTCCGTGTTCCCTCCCATTCTCAGGGACCCGCCTCCGC
CGGCGCTGGATCGGTTCGACCTAGACGAACACTTCGCCAGTGACCGGATC
CGGTTGGCACAGATCACCAACAAGTGCACGACAAGCGACCTCGAGTACTA
CGTTCGCGAGTGCGGGGAGATAATGGGCGTGACGGGGCTGCTCGCCGAGG
ATTCACCTCTCTCTGCGGGTCCGATAGGAATCCTTGACCATGTGTTCAAG
AAGCTCATCCGCTATAAAATGCTCAACCAGTGCACGACAAGCGACCTCGA
GTACTACGTTCGCGAGTGCGGGGAGATAATGGGCGTGACGGGGCTGCTCG
CCGAGGATTCACCTCTCTCTGCGGGTCCGATAGGAATCCTTGACCATGTG
TTCAAGAAGCTCATCCGCTATAAAATGCTCAACCAGGAGGAAGGCGCATT
AGACGCTCTTCCCCAAACCAGCAACAGTAGCACGACGACTATTGACCGCT
TCGGGGCCACCGTTTCCAGCACCATTCCTGGTTCCCTTGCCAGCGGCGGG
AGCGTGAGCAAAAACCCAGGACCCGCTCCGGGGACGGCTCTTGACAACGA
ATCTGCGCCGCCACCATCGTCGGATACTACGCCAAGATCAAGCGTCGGCA
ACATGACAAGGCGGCAAAATTCTTCATCTAGTAGCGCCCGCGAGGAAGGC
GCATTAGACGCTCTTCCCCAAACCAGCAACAGTAGCACGACGACTATTGA
CCGCTTCGGGGCCACCGTTTCCAGCACCATTCCTGGTTCCCTTGCCAGCG
GCGGGAGCGTGAGCAAAAACCCAGGACCCGCTCCGGGGACGGCTCTTGAC
AACGAATCTGCGCCGCCACCATCGTCGGATACTACGCCAAGATCAAGCGT
CGGCAACATGACAAGGCGGCAAAATTCTTCATCTAGTAGCGCCCGC
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