mRNA_H-paniculata_contig425.10857.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig425.10857.1
Unique NamemRNA_H-paniculata_contig425.10857.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig425.10857.1 vs. uniprot
Match: A0A6H5JNC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNC8_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 9.500e-26
Identity = 54/74 (72.97%), Postives = 56/74 (75.68%), Query Frame = 3 
Query:   12 GGKTKFRSKTVKRLALGVPILDSDEPIKAIRKAAYLLIAGDESLCKGDKKFPQFVAFWDVEAGAPWWGLLRVCS 233
            GGK KF   TVKRLALG+  LD  E I  I KA YLLIAGDESL KGDKKFP FVA WDV AG PWWGLLR+CS
Sbjct:  347 GGKMKFHGTTVKRLALGIAHLDMAELIAMILKAPYLLIAGDESLRKGDKKFPIFVACWDVVAGRPWWGLLRMCS 420
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BLAST of mRNA_H-paniculata_contig425.10857.1 vs. uniprot
Match: A0A6H5K2P4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P4_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 7.520e-25
Identity = 52/74 (70.27%), Postives = 55/74 (74.32%), Query Frame = 3 
Query:   12 GGKTKFRSKTVKRLALGVPILDSDEPIKAIRKAAYLLIAGDESLCKGDKKFPQFVAFWDVEAGAPWWGLLRVCS 233
            GGK KF   TVKRLALG+  L+  E I  I KA YLLIAGDESL KGDKKFP FVA WDV A  PWWGLLR+CS
Sbjct:  207 GGKMKFHGTTVKRLALGIAHLNMAELIAMILKAPYLLIAGDESLRKGDKKFPIFVACWDVVASRPWWGLLRMCS 280
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BLAST of mRNA_H-paniculata_contig425.10857.1 vs. uniprot
Match: D7FJJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJJ7_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 4.380e-21
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 3 
Query:   39 TVKRLALGVPILDSDEPIKAIRKAAYLLIAGDESLCKGDKKFPQFVAFWDVEAGAPWWGLLRVCS 233
            TVK LALG+  LD +E +KAI KA +LLIAGDESL  GDKKFP FVAF+DVEA APW+GL+RVCS
Sbjct:  242 TVKVLALGITQLDGNELVKAILKAPFLLIAGDESLRNGDKKFPIFVAFYDVEADAPWFGLVRVCS 306
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BLAST of mRNA_H-paniculata_contig425.10857.1 vs. uniprot
Match: D7FHK1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK1_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 7.120e-21
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 3 
Query:   39 TVKRLALGVPILDSDEPIKAIRKAAYLLIAGDESLCKGDKKFPQFVAFWDVEAGAPWWGLLRVCS 233
            TVK LALG+  LD +E +KAI KA +LLIAGDESL  GDKKFP FVAF+DVEA APW+GL+RVCS
Sbjct:  345 TVKVLALGITQLDGNELVKAILKAPFLLIAGDESLRNGDKKFPIFVAFYDVEADAPWFGLVRVCS 409
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BLAST of mRNA_H-paniculata_contig425.10857.1 vs. uniprot
Match: A0A6H5JND1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND1_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.240e-19
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 3 
Query:   39 TVKRLALGVPILDSDEPIKAIRKAAYLLIAGDESLCKGDKKFPQFVAFWDVEAGAPWWGLLRVCS 233
            TVK LA G+  LD +E ++A+ +A +LLIAGDESL  GDKKFP FVAF DVEA APW+GLLRVCS
Sbjct:  199 TVKVLAFGITQLDGEELVEAVLRAPFLLIAGDESLRNGDKKFPVFVAFHDVEADAPWFGLLRVCS 263
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BLAST of mRNA_H-paniculata_contig425.10857.1 vs. uniprot
Match: A0A6H5K280_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K280_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 9.000e-19
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 3 
Query:   39 TVKRLALGVPILDSDEPIKAIRKAAYLLIAGDESLCKGDKKFPQFVAFWDVEAGAPWWGLLRVCS 233
            TVK LALG+  LD +E +KA+ +A +LLI GDESL   DKKFP FVAF DVEA APW+GLLRVCS
Sbjct:  131 TVKVLALGITQLDGEELVKAVVRAPFLLIVGDESLRNRDKKFPVFVAFHDVEADAPWFGLLRVCS 195
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BLAST of mRNA_H-paniculata_contig425.10857.1 vs. uniprot
Match: A0A6H5JNK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK4_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.000e-18
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 3 
Query:   39 TVKRLALGVPILDSDEPIKAIRKAAYLLIAGDESLCKGDKKFPQFVAFWDVEAGAPWWGLLRVCS 233
            TVK LALG+  LD +E +KA+ +A +LLIA DESL   DKKFP FVAF DVEA APW+GLLRVCS
Sbjct:  252 TVKVLALGITQLDGEELVKAVLRAPFLLIADDESLRNEDKKFPVFVAFHDVEADAPWFGLLRVCS 316
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BLAST of mRNA_H-paniculata_contig425.10857.1 vs. uniprot
Match: A0A6H5L160_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L160_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 6.550e-10
Identity = 33/48 (68.75%), Postives = 36/48 (75.00%), Query Frame = 3 
Query:   39 TVKRLALGVPILDSDEPIKAIRKAAYLLIAGDESLCKGDKKFPQFVAF 182
            TVK L LG+  LD  E +KAI KA +LLIAGDESL  GDKKFP FVAF
Sbjct:  274 TVKVLGLGITQLDEKELVKAILKAPFLLIAGDESLLNGDKKFPIFVAF 321
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BLAST of mRNA_H-paniculata_contig425.10857.1 vs. uniprot
Match: A0A6H5JYL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL8_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 2.470e-6
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 3 
Query:   39 TVKRLALGVPILDSDEPIKAIRKAAYLLIAGDESLCKGDKKFPQFVAF 182
            TVK L LG+  LD +E +KAI +A +LLIA DESL  GDKKFP    F
Sbjct:  303 TVKVLGLGITQLDGEELVKAILQAPFLLIADDESLRNGDKKFPSSSPF 350
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig425.10857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JNC8_9PHAE9.500e-2672.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2P4_9PHAE7.520e-2570.27Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FJJ7_ECTSI4.380e-2172.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHK1_ECTSI7.120e-2172.31Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JND1_9PHAE2.240e-1967.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K280_9PHAE9.000e-1967.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNK4_9PHAE2.000e-1867.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L160_9PHAE6.550e-1068.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYL8_9PHAE2.470e-658.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig425contigH-paniculata_contig425:23381..23613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size233
Cds size231
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930291.7421088-UTR-H-paniculata_contig425:23380..233821622930291.7421088-UTR-H-paniculata_contig425:23380..23382Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig425 23381..23382 +
1691481228.0622337-UTR-H-paniculata_contig425:23380..233821691481228.0622337-UTR-H-paniculata_contig425:23380..23382Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig425 23381..23382 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930291.7627838-CDS-H-paniculata_contig425:23382..236131622930291.7627838-CDS-H-paniculata_contig425:23382..23613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig425 23383..23613 +
1691481228.0742946-CDS-H-paniculata_contig425:23382..236131691481228.0742946-CDS-H-paniculata_contig425:23382..23613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig425 23383..23613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig425.10857.1prot_H-paniculata_contig425.10857.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig425 23383..23613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig425.10857.1

>prot_H-paniculata_contig425.10857.1 ID=prot_H-paniculata_contig425.10857.1|Name=mRNA_H-paniculata_contig425.10857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MFEGGKTKFRSKTVKRLALGVPILDSDEPIKAIRKAAYLLIAGDESLCKG
DKKFPQFVAFWDVEAGAPWWGLLRVCS
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mRNA from alignment at H-paniculata_contig425:23381..23613+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig425.10857.1 ID=mRNA_H-paniculata_contig425.10857.1|Name=mRNA_H-paniculata_contig425.10857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=233bp|location=Sequence derived from alignment at H-paniculata_contig425:23381..23613+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATGTTTGAGGGTGGAAAAACGAAATTTCGCAGCAAGACGGTGAAAAGG
CTCGCCCTTGGTGTTCCCATTCTTGATTCGGATGAGCCCATCAAAGCCAT
TCGGAAGGCTGCCTACTTACTTATCGCCGGCGACGAATCGTTGTGTAAAG
GCGATAAGAAGTTTCCCCAGTTCGTGGCGTTTTGGGACGTGGAGGCTGGG
GCGCCGTGGTGGGGACTACTTCGAGTATGCAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig425:23381..23613+

>mRNA_H-paniculata_contig425.10857.1 ID=mRNA_H-paniculata_contig425.10857.1|Name=mRNA_H-paniculata_contig425.10857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig425:23381..23613+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTGAGGGTGGAAAAACGAAATTTCGCAGCAAGACGGTGAAAAGGCT
CGCCCTTGGTGTTCCCATTCTTGATTCGGATGAGCCCATCAAAGCCATTC
GGAAGGCTGCCTACTTACTTATCGCCGGCGACGAATCGTTGTGTAAAGGC
GATAAGAAGTTTCCCCAGTTCGTGGCGTTTTGGGACGTGGAGGCTGGGGC
GCCGTGGTGGGGACTACTTCGAGTATGCAGCATGTTTGAGGGTGGAAAAA
CGAAATTTCGCAGCAAGACGGTGAAAAGGCTCGCCCTTGGTGTTCCCATT
CTTGATTCGGATGAGCCCATCAAAGCCATTCGGAAGGCTGCCTACTTACT
TATCGCCGGCGACGAATCGTTGTGTAAAGGCGATAAGAAGTTTCCCCAGT
TCGTGGCGTTTTGGGACGTGGAGGCTGGGGCGCCGTGGTGGGGACTACTT
CGAGTATGCAGC
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