mRNA_H-paniculata_contig425.10856.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig425.10856.1
Unique NamemRNA_H-paniculata_contig425.10856.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig425.10856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig425contigH-paniculata_contig425:20322..20872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size551
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig425.10856.1prot_H-paniculata_contig425.10856.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig425 20443..20778 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930291.655218-UTR-H-paniculata_contig425:20321..204421622930291.655218-UTR-H-paniculata_contig425:20321..20442Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig425 20322..20442 +
1691481228.0271823-UTR-H-paniculata_contig425:20321..204421691481228.0271823-UTR-H-paniculata_contig425:20321..20442Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig425 20322..20442 +
1622930291.6882942-UTR-H-paniculata_contig425:20778..208721622930291.6882942-UTR-H-paniculata_contig425:20778..20872Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig425 20779..20872 +
1691481228.046984-UTR-H-paniculata_contig425:20778..208721691481228.046984-UTR-H-paniculata_contig425:20778..20872Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig425 20779..20872 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930291.6748106-CDS-H-paniculata_contig425:20442..207781622930291.6748106-CDS-H-paniculata_contig425:20442..20778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig425 20443..20778 +
1691481228.036964-CDS-H-paniculata_contig425:20442..207781691481228.036964-CDS-H-paniculata_contig425:20442..20778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig425 20443..20778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig425.10856.1

>prot_H-paniculata_contig425.10856.1 ID=prot_H-paniculata_contig425.10856.1|Name=mRNA_H-paniculata_contig425.10856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MAAYIWNGRPSETSRVGNMITVIEYISVMGRLMHFACNAGAESATHNTAK
NGRSSTLSVRQKSSKWEILNVFTISNLRHRAGSGPSSLFASCAASLCADA
ILLVVFVFETT*
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mRNA from alignment at H-paniculata_contig425:20322..20872+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig425.10856.1 ID=mRNA_H-paniculata_contig425.10856.1|Name=mRNA_H-paniculata_contig425.10856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=551bp|location=Sequence derived from alignment at H-paniculata_contig425:20322..20872+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAATATGAATGCGTCGAGAGCTGCCTGCAAGAACAAAGAGGCGCGTGCG
GTCATCGATGCTGTCAAAAAGGTGGAGCTTCTCAGCAAATCCCCGAACTC
CAAGGTTCGTGCGCGCTCGTTATGGCTGCTTATATCTGGAATGGAAGACC
TAGTGAAACGTCTCGCGTGGGGAATATGATCACCGTTATCGAGTACATTT
CCGTGATGGGGCGCTTGATGCACTTCGCGTGCAACGCAGGGGCGGAGTCA
GCCACGCACAACACGGCGAAAAACGGCCGATCGTCCACGCTTTCGGTGCG
GCAAAAGTCGAGCAAATGGGAGATACTGAATGTCTTCACAATCAGCAACC
TCAGGCACCGTGCTGGGTCGGGCCCAAGCTCGCTCTTCGCTTCCTGTGCG
GCGTCTCTGTGTGCCGACGCGATTCTCTTGGTGGTTTTCGTCTTCGAGAC
AACCTGAGACGCCGCAAGACAGTACCACACACACACATCCCATTAGTGCT
TTTGATGTTCACATCAACACAACAGTAGCCCGTCGCAGAACTATTCATGT
G
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Coding sequence (CDS) from alignment at H-paniculata_contig425:20322..20872+

>mRNA_H-paniculata_contig425.10856.1 ID=mRNA_H-paniculata_contig425.10856.1|Name=mRNA_H-paniculata_contig425.10856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig425:20322..20872+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGCTTATATCTGGAATGGAAGACCTAGTGAAACGTCTCGCGTGGG
GAATATGATCACCGTTATCGAGTACATTTCCGTGATGGGGCGCTTGATGC
ACTTCGCGTGCAACGCAGGGGCGGAGTCAGCCACGCACAACACGGCGAAA
AACGGCCGATCGTCCACGCTTTCGGTGCGGCAAAAGTCGAGCAAATGGGA
GATACTGAATGTCTTCACAATCAGCAACCTCAGGCACCGTGCTGGGTCGG
GCCCAAGCTCGCTCTTCGCTTCCTGTGCGGCGTCTCTGTGTGCCGACGCG
ATTCTCTTGGTGGTTTTCGTCTTCGAGACAACCTGAATGGCTGCTTATAT
CTGGAATGGAAGACCTAGTGAAACGTCTCGCGTGGGGAATATGATCACCG
TTATCGAGTACATTTCCGTGATGGGGCGCTTGATGCACTTCGCGTGCAAC
GCAGGGGCGGAGTCAGCCACGCACAACACGGCGAAAAACGGCCGATCGTC
CACGCTTTCGGTGCGGCAAAAGTCGAGCAAATGGGAGATACTGAATGTCT
TCACAATCAGCAACCTCAGGCACCGTGCTGGGTCGGGCCCAAGCTCGCTC
TTCGCTTCCTGTGCGGCGTCTCTGTGTGCCGACGCGATTCTCTTGGTGGT
TTTCGTCTTCGAGACAACCTGA
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