mRNA_H-paniculata_contig4249.10853.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4249.10853.1 vs. uniprot
Match: A0A6H5KUH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH5_9PHAE) HSP 1 Score: 420 bits (1080), Expect = 6.000e-136 Identity = 203/332 (61.14%), Postives = 259/332 (78.01%), Query Frame = 2
Query: 734 LQIGEMLQSKARDERDAILNSSRESASRVARRQTVLHVFYLRATKDLSRHSWAAILDPDFTCITPITPYRSFLPAEIREFRRVIKGIDGMIQDTASLAVFMQSICRRAQNPTGQKVKYQFYASADDTVVGPHGLMSRWLMKTENAIECGALCEVFSHGMLKAQFASDNKIKRLELEFDVMSFMQQQQRALGDGEFRVVPNTLEAAIQPSRHARVVCSAQSPYWIRHANQAWTCLVGHSEEEAKLFTVSLLDGPAEATNGGEFNAFVHSCMGSTPPRAGMTELHVVVRDLRRVTVEVQLYPLGTADGGLTHVVMIMEETPMCQGLPQAGVSVF 1729
LQ+GEMLQ+KA++ERDA L +S+ SA R A RQ VL++ YL+AT++LS SWA +LD FTC+ PITP+RSF P+E +E R+I GI+GMIQDTASLAVF++SIC R++NPTG+K+KYQFY S +DTVVG + LM +WLMKT+NA ECGALC+VFSHGML+A F+ DN+IKRLE+ FDVMS MQQ QRA+G GE R+VPNTL A QPS+ AR+V SA PY I H N+AWT L+GH+ EEAK+F +L++GPAEA NG V +C+GS RA M +L VV RDLRR+ V VQ YPLGT DG TH++++MEE P+C LPQ G+ ++
Sbjct: 259 LQVGEMLQAKAQEERDAQLETSKISAKRTAMRQMVLNILYLKATEELSPRSWACVLDDGFTCVCPITPFRSFPPSEAQEDHRLITGIEGMIQDTASLAVFIKSICPRSRNPTGRKLKYQFYTSPEDTVVGSNALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQQARLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRRLAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTGLDLY 590
BLAST of mRNA_H-paniculata_contig4249.10853.1 vs. uniprot
Match: D7FRN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRN7_ECTSI) HSP 1 Score: 251 bits (641), Expect = 1.860e-75 Identity = 119/199 (59.80%), Postives = 150/199 (75.38%), Query Frame = 2
Query: 1133 LMSRWLMKTENAIECGALCEVFSHGMLKAQFASDNKIKRLELEFDVMSFMQQQQRALGDGEFRVVPNTLEAAIQPSRHARVVCSAQSPYWIRHANQAWTCLVGHSEEEAKLFTVSLLDGPAEATNGGEFNAFVHSCMGSTPPRAGMTELHVVVRDLRRVTVEVQLYPLGTADGGLTHVVMIMEETPMCQGLPQAGVSVF 1729
LM +WLMKT+NA ECGALC+VFSHGML+A F+ DN+IKRLE+ FDVMS MQQ QRA+G GE R+VPNTL A QPS+ AR+V SA PY I H N+AWT L+GH+ EEAK+F +L++GPAEA NG V +C+GS RA M +L VV RDLR++ V VQ YPLGT DG TH++++MEE P+C LPQ G+ ++
Sbjct: 41 LMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQQARLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTGLDLY 239
BLAST of mRNA_H-paniculata_contig4249.10853.1 vs. uniprot
Match: A0A836CN81_9STRA (BZIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN81_9STRA) HSP 1 Score: 200 bits (508), Expect = 1.010e-52 Identity = 130/308 (42.21%), Postives = 175/308 (56.82%), Query Frame = 2
Query: 773 ERDAILNSSRESASRVARRQTV------LHVFYLRATKDLSRHSWAAILDPDFTCITPITPYRSFLPAEIREFRRVIKGIDGMIQDTASLAVFMQSI--CRRAQNPTGQKVKYQFYASADDTVVGPHGLMSRWLMKTENAIECGALCEVFSHGMLKAQFASDNKIKRLELEFDVMSFMQQQQRALGDGEFRVVPNTLEAAIQP-SRHARVVCSAQSPYWIRHANQAWTCLVGHSEEEAKLFTVSLLDGPAEATNGGEFNAFVHSCMGSTPPRAGMTELHVVVRDLRRVTVE--VQLYPLGTADGGLTH 1663
ERDA + +R A+ Q+V + +FY RA + R WA L+ FTC+ PITPYRSF AE+ +R+I GID MI D ASLA+ ++S+ CR P+ ++V+ Q+YA +D + L RW+++TENA CGALCE + GML+A+++ +K+ LEL FDVM FMQQ QRA G +FRVVPNTL A P AR + +A+ PY I HA+ AW L G++ EEA T +LL GPA A V MG+ R + VV V + YPL T DG +TH
Sbjct: 149 ERDAAAAAKAAEGARAAQLQSVRFSVLQMALFY-RAAGNTCRADWATALEESFTCVLPITPYRSFPSAEVVSGQRMIVGIDAMIADVASLALMVESVGRCR----PSERRVQVQYYAGPEDAITSGDMLSCRWMLRTENAAACGALCECHAQGMLRARYSPSHKLAHLELAFDVMGFMQQLQRASGLEDFRVVPNTLAMAQAPCDADARFITTAEPPYLIVHASPAWCRLCGYASEEAVGRTAALLQGPATD------RAAVARFMGAVRARH-CCSMEVVNYTKAGVPFANYIVAYPLST-DGRVTH 443
BLAST of mRNA_H-paniculata_contig4249.10853.1 vs. uniprot
Match: A0A7S3UTR3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTR3_HETAK) HSP 1 Score: 196 bits (497), Expect = 9.340e-52 Identity = 103/229 (44.98%), Postives = 144/229 (62.88%), Query Frame = 2
Query: 830 QTVLHVFYLRATKDLSRHSWAAILDPDFTCITPITPYRSFLPAEIREFRRVIKGIDGMIQDTASLAVFMQSICRRAQNPTGQKVKYQFYASADDTVVGPHGLMSRWLMKTENAIECGALCEVFSHGMLKAQF---ASDN------KIKRLELEFDVMSFMQQQQRALGDGEFRVVPNTLEAAIQPSRHARVVCSAQSPYWIRHANQAWTCLVGHSEEEAKLFTVSLLDG 1489
Q V FY RAT +L R WAA+L+ D PITPYRSF E+ + R ++G+DG+++DTASL V +S+ R + + V ++Y + +DTVV LM RW+++T NA++CG LCE+++HGML+A+F +SD K++RL L FDVMSFMQQ QR G F +VPNT+ A Q + AR+VC+AQ PY + H N+AW L G EE ++ LDG
Sbjct: 188 QAVQTFFYYRATGELDRGRWAALLEEDVVLTQPITPYRSFDAREVVQNMREVRGVDGVVKDTASLGVLTKSLGRPGNS---EDVALRYYVAKEDTVVVGRALMCRWMLRTVNAVQCGGLCELYNHGMLRAEFGEPSSDGPPGGGCKLRRLRLVFDVMSFMQQLQRCSGKACFHIVPNTVAMAKQGADEARLVCAAQPPYAVAHVNRAWQALFGQGLEEVYGRPLAFLDG 413
BLAST of mRNA_H-paniculata_contig4249.10853.1 vs. uniprot
Match: A0A6U2CPD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2CPD3_9STRA) HSP 1 Score: 174 bits (441), Expect = 2.100e-46 Identity = 95/236 (40.25%), Postives = 146/236 (61.86%), Query Frame = 2
Query: 773 ERDAILNSSRESASRVA-----RRQTVLHVFYLRATKDLSRHSWAAILDPD-FTCITPITPYRSFLPAEIREFR--RVIKGIDGMIQDTASLAVFMQSICRRAQNPTGQKVKYQFYASADDTVVGPHGLMSRWLMKTENAIECGALCEVFSHGMLKAQFASDNKIKRLELEFDVMSFMQQQQRALGDGEFRVVPNTLEAAIQPSRHARVVCSAQSPYWIRHANQAWTCLVGHSEEE 1456
+RD +++ +A R+ R + +L F LR+ DL R W++ILD FTC+ P+TPYRSF +E++ R R + GIDGMI D+ASL V + S+ R+++P+ +++Q+ +D VV + +M+RW+M T NA++CGA EV GML +F S NKI LEL FDVM+FM Q ++A G F VVPNT++ +P V+ +A+ PY I+ N+ W + G++ E+
Sbjct: 10 DRDNLVSERANAAHRLLEMHNMRTEVLLSFFALRSAYDLRRDLWSSILDESCFTCVMPVTPYRSFPASEVQVARCQRTVMGIDGMISDSASLHVMLNSLVDRSRHPSAT-IRFQYTIVTEDAVVAGNCMMARWVMTTLNAVKCGARMEVSKRGMLCCKFNSSNKITGLELMFDVMAFMLQLKQASGTDSFAVVPNTVQTCQRPFDSPMVMTAAERPYTIKQVNKLWESMTGYAAED 244
BLAST of mRNA_H-paniculata_contig4249.10853.1 vs. uniprot
Match: A0A7S2B104_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B104_9STRA) HSP 1 Score: 174 bits (440), Expect = 6.470e-43 Identity = 98/222 (44.14%), Postives = 130/222 (58.56%), Query Frame = 2
Query: 824 RRQTVLHVFYLRATKDLSRHSWAAILDPDFTCITPITPYRSFLPAEIREFRRVIKGIDGMIQDTASLAVFMQSICRRAQNPTGQKVKYQFYASADDTVVGPHGLMSRWLMKTENAIECGALCEVFSHGMLKAQFASDNKIKRLELEFDVMSFMQQQQRALGDGEFRVVPNTLEAAIQPSRHARVVCSAQSPYWIRHANQAWTCLVGHSEEEAKLFTVSLLDG 1489
R Q + + R + ++ W A+L DFT PITP+R F P E+ RRV++G+ GMIQDTAS V + SI RR G+ V+ F +TV+ M+RW M T NA+ GAL E GMLKA FA +N I ++L FDVMSFMQQ A G G F VVPN++ QPS+ ARV+CSA +P+ I ANQ W + G +E EA+ T ++ G
Sbjct: 304 RHQVIQRMMNYRTSGVVNPEKWQAVLAQDFTMTLPITPHRFFNPNEVVGCRRVVRGVSGMIQDTASFKVLISSIGRRKYRGHGE-VEVNFNMPDGETVIKNDLFMTRWTMSTTNAMSKGALAECSLEGMLKATFADENTISSVDLIFDVMSFMQQLPEACG-GPFEVVPNSMFMLSQPSKEARVICSANAPFNIEQANQPWLDICGFTEAEARGKTFKIIQG 523
BLAST of mRNA_H-paniculata_contig4249.10853.1 vs. uniprot
Match: A0A7R9ZM03_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZM03_9STRA) HSP 1 Score: 155 bits (392), Expect = 1.400e-38 Identity = 105/311 (33.76%), Postives = 164/311 (52.73%), Query Frame = 2
Query: 773 ERDAILNSSRESASRV------ARRQTVLHVFYLRATKDLSRHSWAAILDPD-FTCITPITPYRSFLPAEIR--EFRRVIKGIDGMIQDTASLAVFMQSICRRAQNPTGQKVKYQFYASADDTVVGPHGLMSRWLMKTENAIECGALCEVFSHGMLKAQFASDNKIKRLELEFDVMSFMQQQQRALGDGEFRVVPNTLEAAIQPSRHARVVCSAQSPYWIRHANQAWTCLVGHSEEEAK-LFTVSLLDGPAEATNGGEFNAFVHSCMGSTPPRAGMTELHVVVRDLRRVTVEVQLYPLGTADGGLTHVVMI 1675
ERD ++ S R A+ + R + ++ F LR+ + R WA+ILD F C+ P+TPYRSF +E++ + +R I GIDGM+ DTASL V + S+ R++ P +K+++ ++ VV + +M+RW+M TENA +CGA EV GML +F S +KI LEL FDVM+ M Q ++A G F VVPNT++ + ++ A PY I N+ W + + E+ + +L+G EAT+ A ++ P A + R + +PL T D +TH +M+
Sbjct: 9 ERDTLM-SERAGAANILVEMHNTRTEVLMSFFALRSANEKRRELWASILDESCFACVIPVTPYRSFPASEVQVSKCQRTILGIDGMMADTASLHVLLNSLVDRSRYPNAT-IKFRYTLVTEEAVVAGNQMMARWVMTTENAAQCGARMEVTKQGMLCCKFNSAHKIIGLELMFDVMALMLQLKQAAGSDTFSVVPNTVQTCQRNFDMPMLMMLADEPYTIVQVNKLWENMSNYQAEQVVGKSSCRILEG--EATDPTAVEALINEIRYKRPASAMVVHYKKTGERFRNFFLA---FPLST-DSRITHYLML 311
BLAST of mRNA_H-paniculata_contig4249.10853.1 vs. uniprot
Match: A0A7S2A2E8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A2E8_9STRA) HSP 1 Score: 163 bits (413), Expect = 1.620e-38 Identity = 111/319 (34.80%), Postives = 168/319 (52.66%), Query Frame = 2
Query: 773 ERDAILNSSRESASRV-----ARRQTVLHVFYLRATKDLSRHSWAAILDPD-FTCITPITPYRSFLPAEIR--EFRRVIKGIDGMIQDTASLAVFMQSICRRAQNPTGQKVKYQFYASADDTVVGPHGLMSRWLMKTENAIECGALCEVFSHGMLKAQFASDNKIKRLELEFDVMSFMQQQQRALGDGEFRVVPNTLEAAIQPSRHARVVCSAQSPYWIRHANQAWTCLVGHSEEEAKLFTVSLLDGPAEATNGGEFNAFVHSCMGSTPPRAGMTELHVVVRDLRRVTVEVQLYPLGTADGGLTHVVMIMEETPMCQGL 1705
ERD +++ +AS + R ++ F LR+ + R WA+ILD F C+ P+TPYRSF +E++ + +R I GIDGM+ DTASL V + S+ R++ P V++++ +D+VV + +M+RW+M T NA ECGA EV GML +F S +KI LEL FDVM+FM Q +++ G F VVPNT++ +P V+ A+ PY I N+ W + G+ E+ + S + + TN + + S P A + R RR + +YPL T D +TH V + GL
Sbjct: 257 ERDTLVSERVGAASLLIEMHSTRIDVLMSFFALRSACERRRELWASILDESCFACVMPVTPYRSFPSSEVQVSKCQRTILGIDGMMSDTASLHVLLNSLVDRSKYPNAT-VQFRYTLVTEDSVVAGNQMMARWVMSTLNATECGARMEVSKQGMLCCKFNSAHKIIGLELMFDVMAFMLQLKQSTGSDSFSVVPNTVQTCQRPFDTPMVMTLAERPYTIVQVNKLWEEVTGYRAEDV-VGKASCRELQGQETNRMDVENLMSSVRYKRPASAVLVNY---TRSGRRFRNYLNVYPLST-DSKITHYVGLTVHVDWIDGL 569
BLAST of mRNA_H-paniculata_contig4249.10853.1 vs. uniprot
Match: A0A7S1D1F4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D1F4_CYCTE) HSP 1 Score: 158 bits (400), Expect = 1.970e-38 Identity = 107/316 (33.86%), Postives = 167/316 (52.85%), Query Frame = 2
Query: 773 ERDAILNSSRESASRVA-----RRQTVLHVFYLRATKDLSRHSWAAILDPD-FTCITPITPYRSFLPAEIR--EFRRVIKGIDGMIQDTASLAVFMQSICRRAQNPTGQKVKYQFYASADDTVVGPHGLMSRWLMKTENAIECGALCEVFSHGMLKAQFASDNKIKRLELEFDVMSFMQQQQRALGDGEFRVVPNTLEAAIQPSRHARVVCSAQSPYWIRHANQAWTCLVG-HSEEEAKLFTVSLLDGPAEATNGGEFNAFVHSCMGSTPPRAGMTELHVVVRDLRRVTVEVQLYPLGTADGGLTHVVMIMEETPM 1693
ERD +++ +AS + R + ++ F LR+T + R W++ILD F+C+ P+TPYRSF +E++ + +R I GIDGMI DTASL V + S+ R++ P +++++ +D VV + +M+RW+M T NA + GA EV GML +F S +KI LEL FDVM+FM Q ++A G F VVPNT++ + V+ A+ PY I N+ W + G +E+ + +L G + T+ + S P A + R +R + +YPL T D +TH V + M
Sbjct: 50 ERDTLVSERAGAASLMVEIHNTRTEVLMSFFALRSTYEKQRDLWSSILDESCFSCVMPVTPYRSFPASEVQVSKCQRTILGIDGMISDTASLHVLLNSLIDRSRYPAAS-IQFRYTLVTEDAVVAGNQMMARWVMSTVNATQFGARMEVAKQGMLCCKFNSAHKIIGLELMFDVMAFMLQLKQAAGSETFSVVPNTVQTCQRSFSSPMVMTLAERPYTIVQVNKLWEDMTGFRAEDVVGKASCRILQG--QETDRSAVEVLMSSVRFKRPASASLLNY---TRAGKRFRNYLNVYPLST-DSKITHYVSLTAHVDM 358
BLAST of mRNA_H-paniculata_contig4249.10853.1 vs. uniprot
Match: A0A836C6X3_9STRA (BZIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6X3_9STRA) HSP 1 Score: 156 bits (395), Expect = 2.610e-38 Identity = 100/287 (34.84%), Postives = 152/287 (52.96%), Query Frame = 2
Query: 833 TVLHVFYLRATKDLSRHSWAAILDPDFTCITPITPYRSFLPAEIREFRRVIKGIDGMIQDTASLAVFMQSICRRAQNPTGQ-KVKYQFYA-SADDTVVGPHGLMSRWLMKTENAIECGALCEVFSHGMLKAQFASDNKIKRLELEFDVMSFMQQQQRALGDGEFRVVPNTLEAAIQPSRHARVVCSAQSPYWIRHANQAWTCLVGHSEEEAKLFTVSLLDGPAEATNGGEFNAFVHSCMGSTPPRAGMTELHVVVRDLRRVTVEVQLYPLGTADGG-LTHVVMIMEE 1684
T+ LRA L W+ IL DF P+TPYRSF P+++ RRV+ G+DGM+ DTASL V + +I + + G+ +V+Y + +A++ G GLM ++M+T +A GA CE G+L+A+F I+ LE+ FD ++ Q RA G G+F +VPNTL A ++ + VV +AQ P+ I H N AWT L G +E K +S+L GP T+ V P +T R R ++ YP+ + D G ++H+V ++E
Sbjct: 114 TLRQAMDLRAAGCLDEAQWSKILAEDFKMTMPVTPYRSFSPSDVVNNRRVLLGVDGMVADTASLQVMLDNIGTKTRKNEGRVRVEYLLGSDAAENCFFGAAGLMCTFMMRTLDAKAHGAACECEKSGILRARFDDAGCIEELEMAFDGIAMYHQLMRAKGQGDFPLVPNTLNAVLKNDKDHIVVTTAQRPFRITHVNGAWTQLCGFELDECKGKNLSILQGPE--TDMDTVTELVDISQRGYPASMVVTNYDKSGRPFRN---HLRCYPISSDDSGEISHIVGYLDE 395 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4249.10853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4249.10853.1 >prot_H-paniculata_contig4249.10853.1 ID=prot_H-paniculata_contig4249.10853.1|Name=mRNA_H-paniculata_contig4249.10853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=580bp MNTLKEQQQQQQQQQHQQQQQISVSEGLQCPQGYRPVLGGSSAGIMMDLSback to top mRNA from alignment at H-paniculata_contig4249:2916..13153- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4249.10853.1 ID=mRNA_H-paniculata_contig4249.10853.1|Name=mRNA_H-paniculata_contig4249.10853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10238bp|location=Sequence derived from alignment at H-paniculata_contig4249:2916..13153- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4249:2916..13153- >mRNA_H-paniculata_contig4249.10853.1 ID=mRNA_H-paniculata_contig4249.10853.1|Name=mRNA_H-paniculata_contig4249.10853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3480bp|location=Sequence derived from alignment at H-paniculata_contig4249:2916..13153- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |