mRNA_H-paniculata_contig4247.10850.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4247.10850.1
Unique NamemRNA_H-paniculata_contig4247.10850.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4247.10850.1 vs. uniprot
Match: D8LJN1_ECTSI (Rhomboid domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJN1_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 3.390e-75
Identity = 157/328 (47.87%), Postives = 202/328 (61.59%), Query Frame = 1 
Query:   40 RQPYAIVLALQLFQKIANLKKKPSLTLVLMVAMSLLHVKSDLFQDFMSSSGRHSSGHLELGW-WNIGGWYHHDFVHSVCLLPNAMWDTYRRTGWFDFKRFFLSPVTHADDMHLCYNMISFLSKGMSLELTMHRQNYVGLLLFSTFTSQALLLLAS-VVLMALGADGAMQSCTVGFSGVLFALKYVAQRRSPGVTEVMGFKIDTRYATWLELLLISIFFPNASFLGHLMGILTGIIYLEFPIIALFLRFLVPTRVIPSMYRRPR---YTYTSGTASSGTARAPAAASSRTSKAPSPVKK----SSPSQAALAAEQEELEKAIRRSLENS 996
            R+P+A++LAL+L  +I+ L+ KP LTL LM  MS LH+K D+F+D     G          W W  GG+   D + +VCLLP ++ DTY RTG  + +R  +SP  H DDMHL YNM SFL KG+SLELTM  Q + GLL FS   SQ L++L++ V+L+       M +C VGFSGVLFALKYV  RRSPGVT VMGF + TRYATWLEL+LIS+  PNASFLGHL GIL G++Y+E PI+   +          S+Y   R   YTY SGT  SG A    A      ++P+P       S P      AE+  L++A+RRSL +S
Sbjct:   32 RRPWALILALRLVHQISQLQHKPPLTLALMAGMSALHLKPDIFKDLFGRKG-------VFEWSWLTGGF---DHIRNVCLLPASILDTYERTGEVEIRRLLMSPFVHGDDMHLYYNMASFLLKGVSLELTMGTQAFAGLLSFSLLASQTLMMLSAWVLLVVFDVPSPMHACAVGFSGVLFALKYVLSRRSPGVTSVMGFSVHTRYATWLELVLISVMVPNASFLGHLCGILAGVLYVEVPIVLRVVNLFTGI----SLYNNRRGRSYTYNSGT--SGRASPEGARRETRQQSPNPPAAYDIDSDPE-----AEEAALQEALRRSLLDS 338
[Close]
BLAST of mRNA_H-paniculata_contig4247.10850.1 vs. uniprot
Match: A0A0K8SJN0_LYGHE (Rhomboid domain-containing protein n=5 Tax=Mirini TaxID=236659 RepID=A0A0K8SJN0_LYGHE)

HSP 1 Score: 130 bits (328), Expect = 7.500e-32
Identity = 73/147 (49.66%), Postives = 94/147 (63.95%), Query Frame = 1 
Query:  322 DFKRFFLSPVTHADDMHLCYNMISFLSKGMSLELTMHRQNYVGLLLF-STFTSQALLLLASVVLMALGADGAMQSCTVGFSGVLFALKYVAQRRSP-GVTEVMGFKIDTRYATWLELLLISIFFPNASFLGHLMGILTGIIYLEFPI 756
            D+K FFLS V HADDMHL YNMIS+L KG +LE      N+  LL F ST TS   + +A V    L    AM SC +GFSGV+FALK +    +P G T + GF++  +YA W EL+ I +  PNASF+GHL GIL G++Y + P+
Sbjct:   70 DYKSFFLSNVEHADDMHLYYNMISYLVKGRTLEYKYGSANFALLLAFLSTLTSFFYVAIAYVAAEFLENKHAMSSCAIGFSGVIFALKLLTTLENPVGHTYIQGFRVHVKYAAWAELVAIHVLVPNASFMGHLAGILAGLVYFKTPL 216
[Close]
BLAST of mRNA_H-paniculata_contig4247.10850.1 vs. uniprot
Match: A0A836CHG7_9STRA (Rhomboid domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHG7_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.070e-31
Identity = 109/290 (37.59%), Postives = 145/290 (50.00%), Query Frame = 1 
Query:   28 RRRERQPYAIVLALQLFQKIANLKKKPSLTLVLMVAMSLLHVKSDLFQDFMSSSGRHSSGHLELGWWNIGGWYHHDFVHSVCLLPNAMWDTYRRTGWFDFKRFFLSPVTHADDMHLCYNMISFLSKGMSLELTMHRQNYVGLLLFSTFTSQALLLLASVVLMALGADGAMQSCTVGFSGVLFALKYVAQRRSPGVTEVMG-FKIDTRYATWLELLLISIFFPNASFLGHLMGILTGIIYLEF-PIIALFLRFLVPTRVI---PSMY-----RRPRYTYTSGTASSGTARA 867
            R+R   PYA  +AL L  +   L  KP  T  L+   + +H+        + +        L  G          D+   VCL P  +       G  D  R F S + H DD+HL YNM S L KG+SLE TM    +  L++F    S  L+++ ++  + LG D    SC VGFS VLFALKYVA  R P     +G F ID+R+A+W EL+LI +  PNASFLGHL GIL G++++    ++A   + L P  V    P  Y     R  RYTY  GT  SGTA A
Sbjct:    7 RQRTGNPYATGVALDLLNRFLQLPYKPPFTCFLIALNACIHLYPAALAGVLPAR-------LLFG----------DYT-KVCLKPAKVVKELLN-GEVDAVRLFGSALIHGDDLHLWYNMGSLLMKGVSLETTMGTPAFALLVVFLWALSHTLVVVVALASVYLGFDPGFNSCMVGFSAVLFALKYVAAFREPARPTPVGYFLIDSRWASWAELILIQVVVPNASFLGHLCGILAGVLWVHGGAVVAYTAKTLAPLGVGRGGPGAYDTYGGRGSRYTYARGT--SGTAAA 275
[Close]
BLAST of mRNA_H-paniculata_contig4247.10850.1 vs. uniprot
Match: A0A7S2TY11_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TY11_9EUKA)

HSP 1 Score: 130 bits (327), Expect = 1.150e-31
Identity = 91/240 (37.92%), Postives = 124/240 (51.67%), Query Frame = 1 
Query:   25 RRRRERQPYAIVLALQLFQKIANLKKKPSLTLVLMVAMSLLHVKSDLFQDFMSSSGRHSSGHLELGWWNIGGWYHHDFVHSVCLLPNAMWDTYRRTGWFDFKRFFLSPVTHADDMHLCYNMISFLSKGMSLELTMHRQNYVGLLLFSTFTSQALLLLASVVLMALG-ADGAMQSCTVGFSGVLFALKYVAQRRSPGVTEVMGFKIDTRYATWLELLLISIFFPNASFLGHLMGILTGIIY 741
            RRR +  P  ++L +QL ++IANL+ KP  TL LM   S +++         S   R                     V  VC+ P  +          D+KR  LS   HADD HL YNM S L KG+ LE     + ++G+ L     S +  + A+ ++  LG +  +MQ+C VGFS VLFA K V    SP +T V G  +  +YA WLEL++ISI  PNASFLGHL GIL G++Y
Sbjct:    8 RRRGQIDPRMMMLLMQLGRQIANLEYKPPATLALMALNSAVYLYE------FSLPFR---------------------VPDVCMHPAKI------LFGGDWKRLVLSAFYHADDYHLYYNMSSLLWKGVQLEQQFGTEEFIGMTLVLLGLSHSFYVAAAWIMYTLGISSSSMQTCAVGFSAVLFAYKVVLNFNSPRMTNVYGISVPLKYACWLELVMISIITPNASFLGHLCGILAGLVY 214
[Close]
BLAST of mRNA_H-paniculata_contig4247.10850.1 vs. uniprot
Match: UPI0006D4F5D8 (rhomboid-related protein 4-like isoform X1 n=2 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D4F5D8)

HSP 1 Score: 129 bits (325), Expect = 1.900e-31
Identity = 71/161 (44.10%), Postives = 98/161 (60.87%), Query Frame = 1 
Query:  265 SVCLLPNAMWDTYRRTGWFDFKRFFLSPVTHADDMHLCYNMISFLSKGMSLELTMHRQNYVGLL-LFSTFTSQALLLLASVVLMALGADGAMQSCTVGFSGVLFALKYVAQRR-SPGVTEVMGFKIDTRYATWLELLLISIFFPNASFLGHLMGILTGIIY 741
             VC+  + +W+        DF+   LS + HADDMHL YNMIS+L KG SLE      N+  +L + S  TS   ++LA V  + LG +  M SC +GFSGV+FALK++     S G   + G ++ T+YATW+EL+ I I  PNASF+GH  G+L GI+Y
Sbjct:   58 DVCISGHKIWNKQ------DFRPLILSTIEHADDMHLYYNMISYLVKGRSLENKYGSSNFALILTIISLMTSGLYVILAVVGSILLGNNAIMSSCAIGFSGVIFALKFITTHEDSEGFRYIQGIRVPTKYATWVELIAIHILVPNASFMGHFAGVLAGILY 212
[Close]
BLAST of mRNA_H-paniculata_contig4247.10850.1 vs. uniprot
Match: A0A067QXX6_ZOONE (Rhomboid domain-containing protein 1 n=1 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067QXX6_ZOONE)

HSP 1 Score: 126 bits (317), Expect = 1.170e-30
Identity = 77/175 (44.00%), Postives = 102/175 (58.29%), Query Frame = 1 
Query:  322 DFKRFFLSPVTHADDMHLCYNMISFLSKGMSLELTMHRQNYVGLLLF-STFTSQALLLLASVVLMALGADGAMQSCTVGFSGVLFALKYVAQRRSPGVTE-VMGFKIDTRYATWLELLLISIFFPNASFLGHLMGILTGIIYLEFPIIAL---FLRFLVPTRVIPSMYRRPRYTY 831
            D+KR F S   H DDMHL YNMISFL KG SLE      N+  LLL  S  TS   ++L  ++   L  +  M++C +GFSGV+FALK +    +P   E V G  + TRYA W+EL+LI +  PNASF+GHL GIL G+IY   P+  +   F+  L   R+I  +     YT+
Sbjct:   68 DYKRLFFSTFEHGDDMHLYYNMISFLVKGRSLERRYGSTNFAFLLLMISALTSVIYVVLGQLLTKTLQDEYYMKTCAIGFSGVIFALKVLTSSETPRGREFVGGLWVPTRYAAWIELILIHLLVPNASFMGHLAGILAGVIYTSTPVGTIADEFISLLTGERIIHGVSYYQSYTF 242
[Close]
BLAST of mRNA_H-paniculata_contig4247.10850.1 vs. uniprot
Match: T1IFL8_RHOPR (Rhomboid domain-containing protein n=2 Tax=Rhodnius prolixus TaxID=13249 RepID=T1IFL8_RHOPR)

HSP 1 Score: 126 bits (316), Expect = 2.530e-30
Identity = 70/166 (42.17%), Postives = 97/166 (58.43%), Query Frame = 1 
Query:  262 HSVCLLPNAMWDTYRRTGWFDFKRFFLSPVTHADDMHLCYNMISFLSKGMSLELTMHRQNYVGLL-LFSTFTSQALLLLASVVLMALGADGAMQSCTVGFSGVLFALKYVAQRRSPGVTEVMGFKIDTRYATWLELLLISIFFPNASFLGHLMGILTGIIYLEFPI 756
            H VC+    +W  Y +    ++K   LS   HADDMHL YNMISFL KG +LE      N+  LL +    TS   + L  ++   L     + SC +GFSGV+FALK +    S G + +MG ++ T+YA W EL+ I I  PNASFLGHL GI+ G++Y++ P+
Sbjct:   56 HDVCISAKKVW--YDK----NYKTLLLSTFEHADDMHLYYNMISFLLKGRTLEPLYGSANFALLLSILCLMTSSIYVSLGVLLSNVLNDSSLLYSCAIGFSGVIFALKIITTDNSSGSSVIMGIRVPTKYAAWAELIAIHILVPNASFLGHLAGIIAGVLYVKTPL 215
[Close]
BLAST of mRNA_H-paniculata_contig4247.10850.1 vs. uniprot
Match: A0A482UPC4_9ARCH (Rhomboid family intramembrane serine protease (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UPC4_9ARCH)

HSP 1 Score: 124 bits (310), Expect = 1.010e-29
Identity = 80/253 (31.62%), Postives = 128/253 (50.59%), Query Frame = 1 
Query:   28 RRRERQPYA----IVLALQLFQKIANLKKKPSLTLVLMVAMSLLHVKSD-LFQDFMSSSGRHSSGHLELGWWNIGGWYHHDFVHSVCLLPNAMWDTYRRTGWFDFKRFFLSPVTHADDMHLCYNMISFLSKGMSLELTMHRQNYVGLLLFSTFTSQALLLLASVVLMALGAD---GAMQSCTVGFSGVLFALKYVAQRRSPGVTEVMGFKIDTRYATWLELLLISIFFPNASFLGHLMGILTGIIYLEFPIIA 762
            RR +R P+     + L +Q+  ++  L  KP +TL L+    + H+  D  F D+  ++                       V   C+ P+ +  +        + R  L+   HADDMHL YNM+S L KG+ LE       +  L+++S   S  LL++ S V+ A+  +    +  SC +GFS VLF+LKYV  + SP  T ++GF++ +++A W EL+L S+  P  SF+GHL GIL G +Y+    +A
Sbjct:    6 RRNQRSPHVSPVVVSLLIQILSQLEKLPYKPPVTLGLLAMNIIAHIHPDPYFLDYSLTN-----------------------VRQNCIWPSLIVSSLTNNHSILWNRIVLAGFMHADDMHLYYNMLSLLWKGVQLEQQFGSFQFGILVVYSLLASHILLVVMSYVVYAVTQNIHISSYDSCAIGFSAVLFSLKYVLNQNSPAYTSILGFQVPSKWAAWAELVLASLLSPQVSFIGHLAGILAGYLYVHMDSVA 235
[Close]
BLAST of mRNA_H-paniculata_contig4247.10850.1 vs. uniprot
Match: UPI00193D3A59 (rhomboid-related protein 4-like n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193D3A59)

HSP 1 Score: 123 bits (309), Expect = 1.760e-29
Identity = 72/161 (44.72%), Postives = 97/161 (60.25%), Query Frame = 1 
Query:  265 SVCLLPNAMWDTYRRTGWFDFKRFFLSPVTHADDMHLCYNMISFLSKGMSLELTMHRQNYVGLLLFSTFTSQALLL-LASVVLMALGADGAMQSCTVGFSGVLFALKYVAQRRS-PGVTEVMGFKIDTRYATWLELLLISIFFPNASFLGHLMGILTGIIY 741
             VCL  + +W++       +F+R  LS + HADDMHL +NM S L KG  LE      N+  L+LF T T+ A+ + LA  +   L     M+SC +GFSGVLFALK V  + S P   ++ G  +D+RYA W+EL+ I    PNASFLGHL GIL G++Y
Sbjct:   57 DVCLSADKVWNS------LEFRRMLLSTLEHADDMHLYFNMGSLLLKGSFLERKYWSANFSILILFFTLTTNAIYVSLALGLSYILNNPAVMESCAIGFSGVLFALKVVTTQESRPTYMQIEGLWVDSRYAPWVELIAIHFAVPNASFLGHLAGILAGVLY 211
[Close]
BLAST of mRNA_H-paniculata_contig4247.10850.1 vs. uniprot
Match: A0A7R9JUS6_TIMGE (Hypothetical protein n=4 Tax=Timema TaxID=61471 RepID=A0A7R9JUS6_TIMGE)

HSP 1 Score: 124 bits (310), Expect = 1.900e-29
Identity = 69/147 (46.94%), Postives = 91/147 (61.90%), Query Frame = 1 
Query:  322 DFKRFFLSPVTHADDMHLCYNMISFLSKGMSLELTMHRQNYVGLL-LFSTFTSQALLLLASVVLMALGADGAMQSCTVGFSGVLFALKYVAQRRSP-GVTEVMGFKIDTRYATWLELLLISIFFPNASFLGHLMGILTGIIYLEFPI 756
            D+KR F+SPV H DD+HL YNMISFL KG SLE      N+  LL + +T TS   + L  + +        M+SC +GFSGV+FALK V  +  P G++ + G  +  RYA W EL+LI I  P ASF+GHL GIL G++Y   P+
Sbjct:   70 DYKRLFVSPVEHGDDLHLYYNMISFLVKGRSLETRYGSPNFALLLAILTTLTSFMYVGLGRLCMEVFQDQYYMKSCAIGFSGVIFALKVVTSKEEPQGMSNIGGVLLPVRYAAWAELVLIHILVPRASFMGHLAGILAGLLYTSTPL 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4247.10850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJN1_ECTSI3.390e-7547.87Rhomboid domain-containing protein n=2 Tax=Ectocar... [more]
A0A0K8SJN0_LYGHE7.500e-3249.66Rhomboid domain-containing protein n=5 Tax=Mirini ... [more]
A0A836CHG7_9STRA1.070e-3137.59Rhomboid domain-containing protein n=1 Tax=Tribone... [more]
A0A7S2TY11_9EUKA1.150e-3137.92Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
UPI0006D4F5D81.900e-3144.10rhomboid-related protein 4-like isoform X1 n=2 Tax... [more]
A0A067QXX6_ZOONE1.170e-3044.00Rhomboid domain-containing protein 1 n=1 Tax=Zoote... [more]
T1IFL8_RHOPR2.530e-3042.17Rhomboid domain-containing protein n=2 Tax=Rhodniu... [more]
A0A482UPC4_9ARCH1.010e-2931.62Rhomboid family intramembrane serine protease (Fra... [more]
UPI00193D3A591.760e-2944.72rhomboid-related protein 4-like n=1 Tax=Nilaparvat... [more]
A0A7R9JUS6_TIMGE1.900e-2946.94Hypothetical protein n=4 Tax=Timema TaxID=61471 Re... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4247contigH-paniculata_contig4247:6183..9861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score248.1
Seed ortholog evalue6.7e-63
Seed eggNOG ortholog2880.D8LJN1
Preferred nameRHBDD1
KEGG koko:K09651
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006508,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006986,GO:0007276,GO:0007283,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010604,GO:0010628,GO:0010941,GO:0010954,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016787,GO:0017171,GO:0019222,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030162,GO:0030163,GO:0030176,GO:0030970,GO:0031224,GO:0031227,GO:0031293,GO:0031323,GO:0031325,GO:0031984,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032527,GO:0032879,GO:0033036,GO:0033554,GO:0033619,GO:0034613,GO:0034620,GO:0034644,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036503,GO:0042175,GO:0042176,GO:0042221,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044322,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0045732,GO:0045862,GO:0046907,GO:0048232,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060255,GO:0060548,GO:0065007,GO:0070011,GO:0070613,GO:0070727,GO:0070887,GO:0071214,GO:0071310,GO:0071478,GO:0071482,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0098827,GO:0104004,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903317,GO:1903319,GO:1903513,GO:1904211
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsKOG2632@1,KOG2632@2759
Ec32 ortholog descriptionPeptidase S54, rhomboid domain
Ec32 orthologEc-17_002690.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons4
Model size1121
Cds size1119
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4247.10850.1prot_H-paniculata_contig4247.10850.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4247 6183..9861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930290.8536937-CDS-H-paniculata_contig4247:6182..63851622930290.8536937-CDS-H-paniculata_contig4247:6182..6385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4247 6183..6385 -
1691481227.692577-CDS-H-paniculata_contig4247:6182..63851691481227.692577-CDS-H-paniculata_contig4247:6182..6385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4247 6183..6385 -
1622930290.869475-CDS-H-paniculata_contig4247:7093..73911622930290.869475-CDS-H-paniculata_contig4247:7093..7391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4247 7094..7391 -
1691481227.705297-CDS-H-paniculata_contig4247:7093..73911691481227.705297-CDS-H-paniculata_contig4247:7093..7391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4247 7094..7391 -
1622930290.8836076-CDS-H-paniculata_contig4247:8161..84711622930290.8836076-CDS-H-paniculata_contig4247:8161..8471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4247 8162..8471 -
1691481227.7155561-CDS-H-paniculata_contig4247:8161..84711691481227.7155561-CDS-H-paniculata_contig4247:8161..8471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4247 8162..8471 -
1622930290.9020946-CDS-H-paniculata_contig4247:9553..98611622930290.9020946-CDS-H-paniculata_contig4247:9553..9861Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4247 9554..9861 -
1691481227.7291656-CDS-H-paniculata_contig4247:9553..98611691481227.7291656-CDS-H-paniculata_contig4247:9553..9861Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4247 9554..9861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4247.10850.1

>prot_H-paniculata_contig4247.10850.1 ID=prot_H-paniculata_contig4247.10850.1|Name=mRNA_H-paniculata_contig4247.10850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=373bp
MRYYYPRQRRRRERQPYAIVLALQLFQKIANLKKKPSLTLVLMVAMSLLH
VKSDLFQDFMSSSGRHSSGHLELGWWNIGGWYHHDFVHSVCLLPNAMWDT
YRRTGWFDFKRFFLSPVTHADDMHLCYNMISFLSKGMSLELTMHRQNYVG
LLLFSTFTSQALLLLASVVLMALGADGAMQSCTVGFSGVLFALKYVAQRR
SPGVTEVMGFKIDTRYATWLELLLISIFFPNASFLGHLMGILTGIIYLEF
PIIALFLRFLVPTRVIPSMYRRPRYTYTSGTASSGTARAPAAASSRTSKA
PSPVKKSSPSQAALAAEQEELEKAIRRSLENSGGLDVEEEGSVSENPRVV
PSAPNMEADMTTAGQNNGGGNWE
back to top

mRNA from alignment at H-paniculata_contig4247:6183..9861-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4247.10850.1 ID=mRNA_H-paniculata_contig4247.10850.1|Name=mRNA_H-paniculata_contig4247.10850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3679bp|location=Sequence derived from alignment at H-paniculata_contig4247:6183..9861- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGTACTATTACCCTAGGCAACGTAGGCGGCGTGAGCGACAACCCTA
TGCTATCGTGCTGGCGCTACAGCTGTTCCAGAAAATCGCCAACCTAAAAA
AGAAGCCATCTTTAACCTTAGTGCTCATGGTGGCAATGAGCTTGCTCCAC
GTGAAGTCGGATTTGTTTCAGGACTTCATGAGCAGTAGCGGGAGGCACTC
TAGCGGTCATTTGGAATTGGGGTGGTGGAATATTGGCGGCTGGTATCATC
ATGATTTCGTGCACTCGGTGTGTCTTTTGCCGAACGCCATGTGGGATACC
TACCGGAGGTGAGCAGGCGATGTTTGATATCTCTGACCGATAGGCTGTAA
CAGTGGTAAAACACGTCTGTATTATCTCGGGAGAGAGGAAGCAAGTGAGC
AGGTAAGCAGACTCCTTGAATCTTGTGGACGGCTTGTGCGTGGATTTTAG
AGTTACTGTAAAATACGCTATTCGAAGATTATGCCGCAGTGTATTGCTCC
CAATCGTACATCTGGGGTTCCCCTGGATTGCTTGTATCCGTAGTTGATGG
TTTCTTTGCTTCTCATATATCTGAAACAGCGAAGATCCGAAGTGCATCTT
TATGATGCCTTGTCATATCCAATCATGGATATTTACGGTCGGCACGGATA
TGGTCAATAGCTACACGAACTCAAGTCTTGTCGTCAGCAATCAGTGCATA
ATTATTCATAAGAGGTCGTTACCTGCAACAGATGACGTCATTCGAAGTAG
CTCGTGCAGGCGACCGCCATGTGGAAATCACGGACGATAGCTCGTGCGAA
AATCATTCTTCGTTAATGCTGGGAGGTCATGATATATGTGTGTAGGAGCG
TAATTTATTATCAAGAATTACTACACAACGACATGAAAACACTTGTGAGC
GCCAATTCGAAAACCTCTCTTTTATCATGGTATTATTTCTAATTGGCTGA
CGCGATGACACAACTTGTCAAGGGGGGGAATATGGCCCCCACGTGATCCT
GCCGTCATGCTACTCACAGCGTGGAACGACGCGAAGACCCGCGAGAACAG
CGCTGGTGTCGAGTCGGAGGAGTGAGGTTGTATTCGATGTCTCTATGGTC
TGGCATTGACTGTGTTACTTCTCACCGATAATTAGATGACGTGTTCATTT
CTGGTCGTGCTCTTGTCTCGGCATGCTATGCCGATGCCCCCAACGTGCCA
TTTAGTAGGTATGTACACATTTGATCTACACTAAATTTCAGGTCTCCCTT
TCCATAGGTCTTCCCTAATGTACCAAAACAGCATTCCCACACTAAACTAA
ACGAGCAGCAACAGATCTTCGGTCTCGCTTTATCGTTCCTCTCCCGCGCG
CTTATTTGTGTGATTATGCGTCGGTTGCTCCATTTCCCAGGACAGGATGG
TTCGACTTCAAAAGGTTTTTTCTGTCTCCCGTCACACACGCCGACGATAT
GCACCTCTGCTACAACATGATTTCTTTCCTGTCCAAGGGGATGTCGCTGG
AGCTAACCATGCATCGGCAGAACTACGTCGGACTGCTATTGTTTAGCACC
TTCACCTCGCAGGCTCTGTTGCTACTGGCGTCAGTCGTTCTTATGGCATT
GGGAGCCGACGGCGCTATGCAATCCTGTACCGTGGGGTTCTCGGGGGTGC
TCTTCGCCCTCAAGTACGTCGCACAGAGGCGGTCTCCGGGTGTGACGGAG
GTGAATAAAAAGAAAGGAGAGAAAGAGAGAGGGAGAGGGGGGGGTTGGTA
TGCTGGTGGGATTTAAGAAAGTATCTTGTTCGAATACTCTTCATGGTGGT
GGTGACGGCAGTGGTCTTTTTCGGAAGATTTTAATGCCACAAGTGGAGAT
ATCCCTCGAGTATTTTTTCGTACGTTTTTTGTTCAGTCTGTTTCCTGCGT
GATTCACCGGCTTTTTTGTCTGAAGTGGTGTGAGTTGAGCGATCCTTAAA
TCACAGCCGAGGAAGGCGACGAAATACGCTGACTGTACGAACGTACCCGT
GGCCTATTGCCATGCAGCATGACTCGCGAAATTTGCCTGATTGAAATCTG
GACGAAGGTCTTCATCCAGGTCATGGGCGCTACCCTCCTCTCATTTTCGC
TGTTTTCACTATGATCTAGGCTTCCATTCTGATACATCTGTACGGATTAA
GCGCGTTCCACAGCCCAGCCGTTATGTTTTTGATACCCATGCTAATCGTA
AGTTCTCTTGGAGGACCTAATTAAGGTCTCGGAACGAATAAACCTGTGAA
CAGGAAGAATTTTACAGCATCGTGTGTTCATGTCTTGATGAAAATACGCG
ACTATGTTCACACTAACCCCGATCTTGAGATCACAAGGACGCCGATACAT
CAGTCAATCCAGCGCTAACGCTTTTGTCGCAATCACCGGTGCTTGTCACC
CTCGCCCCGCTCCCCTCCCTCCTTTTCGTTTTAATGATTCGCGCGCTCGC
TCATTTGCTCGCTTGCTCAGGTAATGGGCTTTAAAATAGACACGAGATAC
GCCACCTGGCTAGAGCTTCTACTCATCTCAATATTCTTTCCCAACGCTTC
CTTCCTCGGCCATCTAATGGGAATCCTGACCGGTATCATATACTTGGAGT
TTCCGATAATAGCGCTATTCTTGAGGTTCTTGGTCCCCACCAGAGTGATT
CCCTCGATGTACCGCCGGCCTCGGTACACATACACCAGTGGCACTGCCTC
GTCAGGGACTGCTAGGGCTCCTGCTGCTGCCTCGTCCAGGACTTCTAAGG
CCCCCTCTCCTGTCAAAAGTGAGAGTTGTTCCTTTTGTTGCTAACTCAAG
TTTCGGCAGCTCTTTGGTCGTGTGCTTTGTGTTGTACGAAGACGTTGCGT
GCCAGGTCTTCCCGCCCTTGGGGGGGCCAAGTATGCGAAGGAACATATTT
ACATGAAGTACAATACCGCACCAAGTACTTCTTGTGTTGGCGAGAAATTT
ATGTTCTGGTTGGGATTTCTGGCAATTTTTTAACTGTGTGACTGTTGACA
GCTCAGCGCACTGAAAATCAGCTGTTGTGTAGTTCTCCCGAAGAGAAGAT
CCATTCTTGTTGGTGATTTTTAGGCCTCTCCTCATCAAGATATTTGTTGT
ATTTCAGGCCGCTTTGAGTATTCATACCAAGGAAGACATAGAACGTACTT
AGGCCGCAAAAGTTGACGTCTGACTCATGCAGCGTTGCAGCTAACTTCGC
AGTGGTGTTTTTAGCCTTGAATGTGTGCTACGTACCCACATCTTTTGACT
TCTTCTCCATTCATTTGACACCGACTTCTTATTTTGAAATTTTACCAAAC
CTGATCGACGTAGTTCCGATAATGGAACAGTGCCGAGTTGTTGGCCAGCG
CTCTTGTCAAAAGTTGGCCGTATTTTTCTCTACGCGTATATGATGATGTT
CGCCGTCCATTCCCTACTGACTAGACGCCCGGCAAACCCCCGTCGCCCCC
ATCTTGTCGGGAACGTGAAATAACAGAGTCATCGCCGAGCCAAGCTGCCT
TAGCGGCTGAACAGGAGGAGTTAGAAAAGGCAATCAGGCGGTCTTTAGAG
AATAGTGGAGGTCTCGATGTCGAGGAGGAAGGATCAGTGTCCGAAAACCC
CCGTGTAGTGCCTTCCGCGCCTAACATGGAGGCGGACATGACAACTGCGG
GTCAGAACAATGGGGGCGGGAATTGGGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4247:6183..9861-

>mRNA_H-paniculata_contig4247.10850.1 ID=mRNA_H-paniculata_contig4247.10850.1|Name=mRNA_H-paniculata_contig4247.10850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2238bp|location=Sequence derived from alignment at H-paniculata_contig4247:6183..9861- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGTACTATTACCCTAGGCAACGTAGGCGGCGTGAGCGACAACCCTA
TGCTATCGTGCTGGCGCTACAGCTGTTCCAGAAAATCGCCAACCTAAAAA
AGAAGCCATCTTTAACCTTAGTGCTCATGGTGGCAATGAGCTTGCTCCAC
GTGAAGTCGGATTTGTTTCAGGACTTCATGAGCAGTAGCGGGAGGCACTC
TAGCGGTCATTTGGAATTGGGGTGGTGGAATATTGGCGGCTGGTATCATC
ATGATTTCGTGCACTCGGTGTGTCTTTTGCCGAACGCCATGTGGGATACC
TACCGGAGATGCGGTACTATTACCCTAGGCAACGTAGGCGGCGTGAGCGA
CAACCCTATGCTATCGTGCTGGCGCTACAGCTGTTCCAGAAAATCGCCAA
CCTAAAAAAGAAGCCATCTTTAACCTTAGTGCTCATGGTGGCAATGAGCT
TGCTCCACGTGAAGTCGGATTTGTTTCAGGACTTCATGAGCAGTAGCGGG
AGGCACTCTAGCGGTCATTTGGAATTGGGGTGGTGGAATATTGGCGGCTG
GTATCATCATGATTTCGTGCACTCGGTGTGTCTTTTGCCGAACGCCATGT
GGGATACCTACCGGAGGACAGGATGGTTCGACTTCAAAAGGTTTTTTCTG
TCTCCCGTCACACACGCCGACGATATGCACCTCTGCTACAACATGATTTC
TTTCCTGTCCAAGGGGATGTCGCTGGAGCTAACCATGCATCGGCAGAACT
ACGTCGGACTGCTATTGTTTAGCACCTTCACCTCGCAGGCTCTGTTGCTA
CTGGCGTCAGTCGTTCTTATGGCATTGGGAGCCGACGGCGCTATGCAATC
CTGTACCGTGGGGTTCTCGGGGGTGCTCTTCGCCCTCAAGTACGTCGCAC
AGAGGCGGTCTCCGGGTGTGACGGAGGACAGGATGGTTCGACTTCAAAAG
GTTTTTTCTGTCTCCCGTCACACACGCCGACGATATGCACCTCTGCTACA
ACATGATTTCTTTCCTGTCCAAGGGGATGTCGCTGGAGCTAACCATGCAT
CGGCAGAACTACGTCGGACTGCTATTGTTTAGCACCTTCACCTCGCAGGC
TCTGTTGCTACTGGCGTCAGTCGTTCTTATGGCATTGGGAGCCGACGGCG
CTATGCAATCCTGTACCGTGGGGTTCTCGGGGGTGCTCTTCGCCCTCAAG
TACGTCGCACAGAGGCGGTCTCCGGGTGTGACGGAGGTAATGGGCTTTAA
AATAGACACGAGATACGCCACCTGGCTAGAGCTTCTACTCATCTCAATAT
TCTTTCCCAACGCTTCCTTCCTCGGCCATCTAATGGGAATCCTGACCGGT
ATCATATACTTGGAGTTTCCGATAATAGCGCTATTCTTGAGGTTCTTGGT
CCCCACCAGAGTGATTCCCTCGATGTACCGCCGGCCTCGGTACACATACA
CCAGTGGCACTGCCTCGTCAGGGACTGCTAGGGCTCCTGCTGCTGCCTCG
TCCAGGACTTCTAAGGCCCCCTCTCCTGTCAAAAGTAATGGGCTTTAAAA
TAGACACGAGATACGCCACCTGGCTAGAGCTTCTACTCATCTCAATATTC
TTTCCCAACGCTTCCTTCCTCGGCCATCTAATGGGAATCCTGACCGGTAT
CATATACTTGGAGTTTCCGATAATAGCGCTATTCTTGAGGTTCTTGGTCC
CCACCAGAGTGATTCCCTCGATGTACCGCCGGCCTCGGTACACATACACC
AGTGGCACTGCCTCGTCAGGGACTGCTAGGGCTCCTGCTGCTGCCTCGTC
CAGGACTTCTAAGGCCCCCTCTCCTGTCAAAAAGTCATCGCCGAGCCAAG
CTGCCTTAGCGGCTGAACAGGAGGAGTTAGAAAAGGCAATCAGGCGGTCT
TTAGAGAATAGTGGAGGTCTCGATGTCGAGGAGGAAGGATCAGTGTCCGA
AAACCCCCGTGTAGTGCCTTCCGCGCCTAACATGGAGGCGGACATGACAA
CTGCGGGTCAGAACAATGGGGGCGGGAATTGGGAGAGTCATCGCCGAGCC
AAGCTGCCTTAGCGGCTGAACAGGAGGAGTTAGAAAAGGCAATCAGGCGG
TCTTTAGAGAATAGTGGAGGTCTCGATGTCGAGGAGGAAGGATCAGTGTC
CGAAAACCCCCGTGTAGTGCCTTCCGCGCCTAACATGGAGGCGGACATGA
CAACTGCGGGTCAGAACAATGGGGGCGGGAATTGGGAG
back to top