mRNA_H-paniculata_contig4245.10848.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4245.10848.1
Unique NamemRNA_H-paniculata_contig4245.10848.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4245.10848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4245contigH-paniculata_contig4245:267..1408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_003320.1
Exons3
Model size374
Cds size246
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4245.10848.1prot_H-paniculata_contig4245.10848.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4245 708..1408 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930290.6069596-UTR-H-paniculata_contig4245:266..3831622930290.6069596-UTR-H-paniculata_contig4245:266..383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4245 267..383 -
1691481227.58316-UTR-H-paniculata_contig4245:266..3831691481227.58316-UTR-H-paniculata_contig4245:266..383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4245 267..383 -
1622930290.6204033-UTR-H-paniculata_contig4245:696..7071622930290.6204033-UTR-H-paniculata_contig4245:696..707Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4245 697..707 -
1691481227.5975018-UTR-H-paniculata_contig4245:696..7071691481227.5975018-UTR-H-paniculata_contig4245:696..707Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4245 697..707 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930290.6318157-CDS-H-paniculata_contig4245:707..8951622930290.6318157-CDS-H-paniculata_contig4245:707..895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4245 708..895 -
1691481227.605629-CDS-H-paniculata_contig4245:707..8951691481227.605629-CDS-H-paniculata_contig4245:707..895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4245 708..895 -
1622930290.6428342-CDS-H-paniculata_contig4245:1350..14081622930290.6428342-CDS-H-paniculata_contig4245:1350..1408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4245 1351..1408 -
1691481227.6134455-CDS-H-paniculata_contig4245:1350..14081691481227.6134455-CDS-H-paniculata_contig4245:1350..1408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4245 1351..1408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4245.10848.1

>prot_H-paniculata_contig4245.10848.1 ID=prot_H-paniculata_contig4245.10848.1|Name=mRNA_H-paniculata_contig4245.10848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
ELYLIFHHLDNRRRGKISIGISRTTIYTQIVRTALSCVTLCDDPVRHAEL
AESIVSCFHNPAQKQKARATEVEWGSSSSQP*
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mRNA from alignment at H-paniculata_contig4245:267..1408-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4245.10848.1 ID=mRNA_H-paniculata_contig4245.10848.1|Name=mRNA_H-paniculata_contig4245.10848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1142bp|location=Sequence derived from alignment at H-paniculata_contig4245:267..1408- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTGTATCTGATCTTCCACCATCTGGACAATCGTCGGAGAGGCAAGAT
CAGCATAGGTACTATAAGGCAGATACATCCTACCATCGAACACGATCCGT
GTATGCCTAGTAGAAGCATCAGTTACTCTTCTCGAATCGTTGGGACCATC
GCTTCACAGATTGGTCTATGGCTTGATTTTCAACCTGTGTAATACCGACC
CGGCGTACCGAGACCGTGTGCTTCGGAATTTGAAAGCTTGAGCGAGGCAA
CACCTTGACCATTCCATACGACGAGCTGTTGGAATAAACCAAAAAGCTGC
GGCAGGCAGCTCGGGCAAGTCGAGGGTTTGGTCGGGATGTCACGTTCGAC
TGAATCCTCTATCGCTCGTAGCAACGCTGACTCATCGAATCCGTGAGGAA
ATCGCGACCACAAAACATGACTATTTCACAAAAAATGGTGAATATGGACT
ACAATGACCATTACTTGAAGGTCGAGCAGATTGGTCTATGGCTTGAATGA
AGAAGGTGAAGAGGCATATCACGAACTACAATATACACCCAAATTGTCAG
GACTGCTCTGAGCTGTGTAACATTGTGCGACGATCCAGTCCGACACGCGG
AACTCGCTGAAAGTATTGTAAGCTGCTTCCACAACCCAGCGCAAAAACAA
AAGGCAAGAGCAACGGAGGTGGAGTGGGGTTCGAGCAGTTCGCAGCCGTA
ATGTACACTCAGGTATATTTACGTTGATCTTCTTGCAGGGCCAAACGAAA
ACTATCTCGTGTTTGTGTTATTTTGTCATTCTTGGGCAACGGGTATCGTA
TCTTGTCAACCCACAGTCTCACTCGCTACAAGGGCAGCTGTATTGGACGC
TTGGGATCCCACAAGGTACACTTCTATATACCCCTGGTGGTAGGACACAT
GGGCCATTTTCTACACAATGCATGGGGTGTAAAAATATATTTTATATTAC
AACGTTCAAGATCTTGCGCCATGTGATTGTGTTACGCGTTCTTTTTCCCT
CTCGACAAAGCAAAACATGCATCAGGAGCAAGGGCACGCATTCCCTGCGC
TGCAGGACGGGCTGAAGGATGCCTTTCTTGCAGCAGTAATATCTTTCTTG
GTCAAGTTGCACCGAGGAGAGGTGGTTGTGCGAGATCTATTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4245:267..1408-

>mRNA_H-paniculata_contig4245.10848.1 ID=mRNA_H-paniculata_contig4245.10848.1|Name=mRNA_H-paniculata_contig4245.10848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig4245:267..1408- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTGTATCTGATCTTCCACCATCTGGACAATCGTCGGAGAGGCAAGAT
CAGCATAGGAGCTGTATCTGATCTTCCACCATCTGGACAATCGTCGGAGA
GGCAAGATCAGCATAGGCATATCACGAACTACAATATACACCCAAATTGT
CAGGACTGCTCTGAGCTGTGTAACATTGTGCGACGATCCAGTCCGACACG
CGGAACTCGCTGAAAGTATTGTAAGCTGCTTCCACAACCCAGCGCAAAAA
CAAAAGGCAAGAGCAACGGAGGTGGAGTGGGGTTCGAGCAGTTCGCAGCC
GTAAGCATATCACGAACTACAATATACACCCAAATTGTCAGGACTGCTCT
GAGCTGTGTAACATTGTGCGACGATCCAGTCCGACACGCGGAACTCGCTG
AAAGTATTGTAAGCTGCTTCCACAACCCAGCGCAAAAACAAAAGGCAAGA
GCAACGGAGGTGGAGTGGGGTTCGAGCAGTTCGCAGCCGTAA
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