mRNA_H-paniculata_contig42436.10846.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42436.10846.1
Unique NamemRNA_H-paniculata_contig42436.10846.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig42436.10846.1 vs. uniprot
Match: D7G2Y7_ECTSI (Similar to TNF receptor associated factor 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y7_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 3.670e-55
Identity = 81/104 (77.88%), Postives = 94/104 (90.38%), Query Frame = 1 
Query:   22 GEWLPFEELVRHMKVLCVKRPFPPVLCRLGCGEEFHGGLHRMLQSEEERIEHEHELCDHRLMHCTWGGCEDMVMAKDRKRHQAEHVIQSGVSLFCVPGKYSFKV 333
            GEWLPFE+L++HMKV CVKRPFPPV CRLGCGE+FHGGLHRMLQSEEERI+HEHELC HRL+HC W GCE+MVMAKDR+ H  EHV+++GV L+ VPGKY+FKV
Sbjct:  346 GEWLPFEDLMKHMKVSCVKRPFPPVKCRLGCGEKFHGGLHRMLQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKV 449
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BLAST of mRNA_H-paniculata_contig42436.10846.1 vs. uniprot
Match: A0A7S1U9Z3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9Z3_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.280e-37
Identity = 61/104 (58.65%), Postives = 80/104 (76.92%), Query Frame = 1 
Query:   25 EWLPFEELVRHMKVLCVKRPFPPVLCRLGCGEEFHGGLHRMLQSEEERIEHEHELCDHRLMHCTW-GGCEDMVMAKDRKRHQAEHVIQSGVSLFCVPGKYSFKV 333
            EW+PF +L  HM  LC+KRPFPP+LCRLGCGE+F GG HRMLQSEEER++HE  LC +RL+ C W GGC  M+MAK+R++H+  H+ ++GV +F V G  +F V
Sbjct:  245 EWVPFSDLQEHMDNLCIKRPFPPLLCRLGCGEQFAGGAHRMLQSEEERLDHEQNLCANRLVRCDWPGGCVAMIMAKNRRKHRQLHIQRTGVFVFTVAGTSTFVV 348
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BLAST of mRNA_H-paniculata_contig42436.10846.1 vs. uniprot
Match: A0A7S2B3R6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3R6_9STRA)

HSP 1 Score: 130 bits (328), Expect = 9.150e-36
Identity = 52/89 (58.43%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:   16 RCGEWLPFEELVRHMKVLCVKRPFPPVLCRLGCGEEFHGGLHRMLQSEEERIEHEHELCDHRLMHCTWGGCEDMVMAKDRKRHQAEHVI 282
            +CGEW+P+E++  H+   C KRPFPP LCRLGCG EF GG H +LQ EEER+EHE E+C+ RL  CTW GC  M +AKDR+ H+ +H+I
Sbjct:  144 KCGEWVPYEDMQLHLNKDCPKRPFPPFLCRLGCGLEFTGGFHMLLQMEEERLEHEEEMCERRLCRCTWKGCNAMTLAKDRRAHRKKHII 232
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BLAST of mRNA_H-paniculata_contig42436.10846.1 vs. uniprot
Match: A0A8J2SRR5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRR5_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.790e-32
Identity = 49/92 (53.26%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:   58 MKVLCVKRPFPPVLCRLGCGEEFHGGLHRMLQSEEERIEHEHELCDHRLMHCTWGGCEDMVMAKDRKRHQAEHVIQSGVSLFCVPGKYSFKV 333
            M+ LC+KRPFPP+ CRLGCGE F GG H +L+ EE+R+EHE E+C  R++ C   GC   V A DR RH+  H+++ G++L CVPG Y +KV
Sbjct:    1 MQCLCIKRPFPPIRCRLGCGELFAGGAHEILKCEEDRLEHEQEMCPRRMVRCHVKGCAATVRAMDRPRHRRLHMLRGGIALHCVPGAYEYKV 92
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BLAST of mRNA_H-paniculata_contig42436.10846.1 vs. uniprot
Match: A0A6G0W578_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W578_9STRA)

HSP 1 Score: 110 bits (274), Expect = 9.560e-26
Identity = 45/105 (42.86%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:   19 CGEWLPFEELVRHMKVLCVKRPFPPVLCRLGCGEEFHGGLHRMLQSEEERIEHEHELCDHRLMHCTWGGCEDMVMAKDRKRHQAEHVIQSGVSLFCVPGKYSFKV 333
            CG W+  ++L  HM  +C+KRP P + CR+GCG+ FHG  + +L  E+ER  HE E C +R++ C W GC++ +MAKDRK H+  H+  SG+  F   G + + V
Sbjct:  949 CGAWIQNDQLPHHMDYMCIKRPVPDLYCRVGCGKIFHGATNLILALEQERTWHELEECPNRIVSCMWPGCQEEMMAKDRKLHRKNHLCASGIVTFKTNGSFEYVV 1053
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BLAST of mRNA_H-paniculata_contig42436.10846.1 vs. uniprot
Match: A0A1V9YY24_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YY24_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.000e-21
Identity = 41/105 (39.05%), Postives = 65/105 (61.90%), Query Frame = 1 
Query:   19 CGEWLPFEELVRHMKVLCVKRPFPPVLCRLGCGEEFHGGLHRMLQSEEERIEHEHELCDHRLMHCTWGGCEDMVMAKDRKRHQAEHVIQSGVSLFCVPGKYSFKV 333
            CG W+  +++  H    CV+RP   ++CRLGCG+ F G  +++L+ E +R  HE E C  R++ C W GC++ ++AK+RK H+  H+  SG++ F   G Y F V
Sbjct: 1195 CGMWVALDQVDVHSNERCVRRPVSGLMCRLGCGQLFEGENNQILELEHDRSWHEAEDCPLRIVKCMWPGCQETMLAKERKLHRRTHLCASGITTFKTAGNYDFVV 1299
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BLAST of mRNA_H-paniculata_contig42436.10846.1 vs. uniprot
Match: A0A7S2RVK2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVK2_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 6.760e-21
Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:  121 EFHGGLHRMLQSEEERIEHEHELCDHRLMHCTWGGCEDMVMAKDRKRHQAEHVIQSGVSLFCVPGKYSFKV 333
            EF GG+HRMLQ EEER+EHE E+C+ R++ CTW GC     A  R  H+ +H+I SG+  + VPG Y +KV
Sbjct:    1 EFSGGVHRMLQCEEERLEHEQEMCEFRIVRCTWQGCASCFPAYKRSEHRQQHIIASGIITYTVPGLYQYKV 71
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BLAST of mRNA_H-paniculata_contig42436.10846.1 vs. uniprot
Match: A0A6H5L1R4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R4_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.400e-5
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:  235 MVMAKDRKRHQAEHVIQSGVSLFCVPGKYSFKV 333
            MVMAKDR+ H  EHV+++GV L+ VPGKY+FKV
Sbjct:    1 MVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKV 33
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42436.10846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G2Y7_ECTSI3.670e-5577.88Similar to TNF receptor associated factor 4 n=1 Ta... [more]
A0A7S1U9Z3_9STRA1.280e-3758.65Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2B3R6_9STRA9.150e-3658.43Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A8J2SRR5_9STRA4.790e-3253.26Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A6G0W578_9STRA9.560e-2642.86Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9YY24_9STRA2.000e-2139.05Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S2RVK2_9STRA6.760e-2152.11Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6H5L1R4_9PHAE1.400e-566.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42436contigH-paniculata_contig42436:763..1620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue6.5e-22
Seed eggNOG ortholog65071.PYU1_T012829
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TNF receptor associated factor 4. Source PGD
EggNOG OGs1MC5G@121069,COG0666@1,KOG4177@2759
COG Functional cat.M
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons2
Model size333
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930290.1074693-CDS-H-paniculata_contig42436:762..9151622930290.1074693-CDS-H-paniculata_contig42436:762..915Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42436 763..915 +
1691481227.3241947-CDS-H-paniculata_contig42436:762..9151691481227.3241947-CDS-H-paniculata_contig42436:762..915Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42436 763..915 +
1622930290.124898-CDS-H-paniculata_contig42436:1440..16201622930290.124898-CDS-H-paniculata_contig42436:1440..1620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42436 1441..1620 +
1691481227.3378885-CDS-H-paniculata_contig42436:1440..16201691481227.3378885-CDS-H-paniculata_contig42436:1440..1620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42436 1441..1620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42436.10846.1prot_H-paniculata_contig42436.10846.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42436 763..1620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42436.10846.1

>prot_H-paniculata_contig42436.10846.1 ID=prot_H-paniculata_contig42436.10846.1|Name=mRNA_H-paniculata_contig42436.10846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MVKRIRCGEWLPFEELVRHMKVLCVKRPFPPVLCRLGCGEEFHGGLHRML
QSEEERIEHEHELCDHRLMHCTWGGCEDMVMAKDRKRHQAEHVIQSGVSL
FCVPGKYSFKV
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mRNA from alignment at H-paniculata_contig42436:763..1620+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42436.10846.1 ID=mRNA_H-paniculata_contig42436.10846.1|Name=mRNA_H-paniculata_contig42436.10846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=858bp|location=Sequence derived from alignment at H-paniculata_contig42436:763..1620+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAAACGAATCAGGTGCGGTGAATGGCTGCCGTTCGAAGAGCTGGT
GCGCCACATGAAGGTTTTGTGCGTCAAGCGACCGTTTCCTCCCGTGTTGT
GTCGACTCGGATGCGGCGAGGAGTTCCATGGAGGCCTTCACCGGATGCTG
CAGGTTCTGTACTTTAGTCTATTTTACTGTTCTATATGTATTCGGTCGTG
ATAACCGTTCTACAGGGGCCTTTGTCAGACGCCGCGGAAAAGCGTAGGAC
ATACGTAAAACTAGAGTATGTCTGATACAAAGCACGCTGCATACCTGCTA
TACTATGTGCATACGCACACTGCCGGTTGTGACACTTTTACTCTCGTTTT
CACGAACATATCTGTCCAATCGTTAAGACCCGCGATCATTTATTGCCTAC
AATACTTGCACGTGTTTCATTTAATTACTTGCTTTCAAAATTGGTTCTGT
ATTTTGGTATATTTCAATGTACTTTGATTGAAGCCAAACGCATAGTAGGT
CCGGTCTACCTGACCCTGAGTGAACCAAAACAGATATAGCGCAAAAAGAA
AAAAAAAAGAAAAAAAGATAGAAACGTACAAAAGGTACATTCCGGCCTTT
TACAACTAAACCAGGTGCAGAACAGTATGAGCACCACATTTACAACGTGT
AACTATATTCGTACTGTAAACGCTCAAGTCCGAAGAGGAGCGAATAGAGC
ACGAGCACGAGCTCTGCGACCACCGACTGATGCACTGCACTTGGGGAGGG
TGCGAGGACATGGTGATGGCTAAGGATCGAAAGCGGCATCAAGCGGAGCA
CGTCATTCAATCGGGCGTGTCTCTTTTCTGCGTACCGGGAAAATACAGCT
TCAAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig42436:763..1620+

>mRNA_H-paniculata_contig42436.10846.1 ID=mRNA_H-paniculata_contig42436.10846.1|Name=mRNA_H-paniculata_contig42436.10846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig42436:763..1620+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAAACGAATCAGGTGCGGTGAATGGCTGCCGTTCGAAGAGCTGGT
GCGCCACATGAAGGTTTTGTGCGTCAAGCGACCGTTTCCTCCCGTGTTGT
GTCGACTCGGATGCGGCGAGGAGTTCCATGGAGGCCTTCACCGGATGCTG
CAGATGGTGAAACGAATCAGGTGCGGTGAATGGCTGCCGTTCGAAGAGCT
GGTGCGCCACATGAAGGTTTTGTGCGTCAAGCGACCGTTTCCTCCCGTGT
TGTGTCGACTCGGATGCGGCGAGGAGTTCCATGGAGGCCTTCACCGGATG
CTGCAGTCCGAAGAGGAGCGAATAGAGCACGAGCACGAGCTCTGCGACCA
CCGACTGATGCACTGCACTTGGGGAGGGTGCGAGGACATGGTGATGGCTA
AGGATCGAAAGCGGCATCAAGCGGAGCACGTCATTCAATCGGGCGTGTCT
CTTTTCTGCGTACCGGGAAAATACAGCTTCAAGGTGTCCGAAGAGGAGCG
AATAGAGCACGAGCACGAGCTCTGCGACCACCGACTGATGCACTGCACTT
GGGGAGGGTGCGAGGACATGGTGATGGCTAAGGATCGAAAGCGGCATCAA
GCGGAGCACGTCATTCAATCGGGCGTGTCTCTTTTCTGCGTACCGGGAAA
ATACAGCTTCAAGGTG
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