mRNA_H-paniculata_contig42407.10842.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42407.10842.1
Unique NamemRNA_H-paniculata_contig42407.10842.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig42407.10842.1 vs. uniprot
Match: A0A6H5JW59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW59_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 8.770e-22
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:  439 TCF-GDSPLLPVDAAVPLGRLERGAECGASVRLTAVRTGLARLSTLCLRDVITGAIYAPASPYEVFVE 639
            TC  GD  LLPVDAAVPLGRLERGAE GA+VRLTA R GLARLS+LCLRD +TG++YAP+ PYEVFVE
Sbjct:  327 TCLLGD--LLPVDAAVPLGRLERGAEHGATVRLTAARAGLARLSSLCLRDALTGSVYAPSCPYEVFVE 392
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BLAST of mRNA_H-paniculata_contig42407.10842.1 vs. uniprot
Match: D7FI50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI50_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 9.500e-21
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:  439 TCF-GDSPLLPVDAAVPLGRLERGAECGASVRLTAVRTGLARLSTLCLRDVITGAIYAPASPYEVFVE 639
            TC  GD  LLPVDAAVPLGRLERGAE GA+VRLTA R GLARLS+LCLRD +TG++Y P+ PYEVFVE
Sbjct:  653 TCLLGD--LLPVDAAVPLGRLERGAEHGATVRLTAARAGLARLSSLCLRDALTGSVYVPSCPYEVFVE 718
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42407.10842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JW59_9PHAE8.770e-2277.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI50_ECTSI9.500e-2176.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42407contigH-paniculata_contig42407:410..1653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size680
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42407.10842.1prot_H-paniculata_contig42407.10842.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42407 464..1615 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930289.4080148-UTR-H-paniculata_contig42407:409..4631622930289.4080148-UTR-H-paniculata_contig42407:409..463Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42407 410..463 +
1691481227.0541961-UTR-H-paniculata_contig42407:409..4631691481227.0541961-UTR-H-paniculata_contig42407:409..463Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42407 410..463 +
1622930289.4941921-UTR-H-paniculata_contig42407:1615..16531622930289.4941921-UTR-H-paniculata_contig42407:1615..1653Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42407 1616..1653 +
1691481227.0775523-UTR-H-paniculata_contig42407:1615..16531691481227.0775523-UTR-H-paniculata_contig42407:1615..1653Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig42407 1616..1653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930289.4500935-CDS-H-paniculata_contig42407:463..6401622930289.4500935-CDS-H-paniculata_contig42407:463..640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42407 464..640 +
1691481227.062781-CDS-H-paniculata_contig42407:463..6401691481227.062781-CDS-H-paniculata_contig42407:463..640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42407 464..640 +
1622930289.4736438-CDS-H-paniculata_contig42407:1204..16151622930289.4736438-CDS-H-paniculata_contig42407:1204..1615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42407 1205..1615 +
1691481227.0703454-CDS-H-paniculata_contig42407:1204..16151691481227.0703454-CDS-H-paniculata_contig42407:1204..1615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42407 1205..1615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42407.10842.1

>prot_H-paniculata_contig42407.10842.1 ID=prot_H-paniculata_contig42407.10842.1|Name=mRNA_H-paniculata_contig42407.10842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=196bp
MFTKNGDGGEQAEASGVRGEGKVKLTLDRVRVEGLAGGSGDSSDAGGDNE
DDDEDGSNTQRSSSRFRSTGSTNYRPPVSPSYPTATTTKPKNSTRTSSVR
FPTETPSPPLHHPQQAPTRPITGVAPGNTCFGDSPLLPVDAAVPLGRLER
GAECGASVRLTAVRTGLARLSTLCLRDVITGAIYAPASPYEVFVE*
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mRNA from alignment at H-paniculata_contig42407:410..1653+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42407.10842.1 ID=mRNA_H-paniculata_contig42407.10842.1|Name=mRNA_H-paniculata_contig42407.10842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1244bp|location=Sequence derived from alignment at H-paniculata_contig42407:410..1653+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGTCGTTGCTGGTGCGTAATCTGTCCGCGGGTGCTCGAGATCTCGT
TGTGATGTTTACAAAGAATGGGGACGGAGGGGAACAGGCAGAGGCATCGG
GTGTGCGGGGAGAGGGAAAGGTGAAGCTAACCTTGGATCGCGTGCGCGTG
GAGGGTTTAGCGGGGGGCAGCGGGGACAGCAGCGATGCCGGTGGTGATAA
TGAAGACGATGACGAGGATGGTTCCAACACGGTGCGTCATGAAAAATGGG
TTTTTTTGTTGTTTTTTTTTGTATTATTTTTTTCGCCTTGTGTTTTTTTT
TTTTTGTATAATTCAGTTTTCTTTTCCTTTGCTTCGCTTCTCTTTCCTTT
TTTTTTTTTTTTCCTATCGGCTTTAGTTTCAATAGTTTTGGTTCTGATTC
TGGTTCTGGTTTGTTCTGCCTCCAATCCAGACTTTTTTTTTCTTCCCGGT
GAGATGCTCTGCATACAGTGTGCACATGGGCATTGTAGACGTTAACTTGT
AGATGTTACCTGCCTGCCCGTCAATCCGTTCAGTAGTGTACTTGAAAAAA
CAAGGCTGAACCTCCCGCCACCCATCTTACTCCATCCCTTACACTCGCTT
CCCGCCCGCATGCCCGCCTCTTTCTCTTTCTCTCACTCTCTCTCCGGCCC
GCCCCGGCCCCCGCGCCCCGCACGTTCTTTTGCACCTTCTTTTACACCTT
CGTTTCCCCCCAATTTGTCCTTCTGTCTGTCTCGCTCTATATCTCTATAT
CTCTATGCATGCATTTCCTTCTGTCTGTCTGTGCTTCGACCACAGCAACG
ATCGTCCTCTCGCTTCCGCTCTACGGGAAGCACAAACTACCGACCACCGG
TATCCCCTAGTTACCCCACCGCCACCACCACGAAGCCAAAGAACAGCACC
AGAACTTCCTCCGTTCGTTTCCCCACAGAAACGCCCTCCCCTCCCCTCCA
CCATCCCCAACAAGCGCCCACAAGACCAATAACCGGCGTAGCTCCAGGAA
ATACTTGTTTCGGAGACTCACCCTTGCTGCCAGTGGACGCGGCGGTTCCT
CTCGGGAGGCTGGAGCGAGGGGCGGAGTGCGGCGCGTCGGTCAGGCTGAC
GGCGGTCAGGACGGGGCTGGCGCGGCTATCGACGCTGTGCCTGAGAGATG
TCATCACGGGCGCGATTTACGCACCGGCTTCCCCGTACGAAGTGTTCGTC
GAATGAAAAAAGTTGTGGTGTGTGTGTGTGTGTGTGTGCGTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig42407:410..1653+

>mRNA_H-paniculata_contig42407.10842.1 ID=mRNA_H-paniculata_contig42407.10842.1|Name=mRNA_H-paniculata_contig42407.10842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at H-paniculata_contig42407:410..1653+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTACAAAGAATGGGGACGGAGGGGAACAGGCAGAGGCATCGGGTGT
GCGGGGAGAGGGAAAGGTGAAGCTAACCTTGGATCGCGTGCGCGTGGAGG
GTTTAGCGGGGGGCAGCGGGGACAGCAGCGATGCCGGTGGTGATAATGAA
GACGATGACGAGGATGGTTCCAACACGATGTTTACAAAGAATGGGGACGG
AGGGGAACAGGCAGAGGCATCGGGTGTGCGGGGAGAGGGAAAGGTGAAGC
TAACCTTGGATCGCGTGCGCGTGGAGGGTTTAGCGGGGGGCAGCGGGGAC
AGCAGCGATGCCGGTGGTGATAATGAAGACGATGACGAGGATGGTTCCAA
CACGCAACGATCGTCCTCTCGCTTCCGCTCTACGGGAAGCACAAACTACC
GACCACCGGTATCCCCTAGTTACCCCACCGCCACCACCACGAAGCCAAAG
AACAGCACCAGAACTTCCTCCGTTCGTTTCCCCACAGAAACGCCCTCCCC
TCCCCTCCACCATCCCCAACAAGCGCCCACAAGACCAATAACCGGCGTAG
CTCCAGGAAATACTTGTTTCGGAGACTCACCCTTGCTGCCAGTGGACGCG
GCGGTTCCTCTCGGGAGGCTGGAGCGAGGGGCGGAGTGCGGCGCGTCGGT
CAGGCTGACGGCGGTCAGGACGGGGCTGGCGCGGCTATCGACGCTGTGCC
TGAGAGATGTCATCACGGGCGCGATTTACGCACCGGCTTCCCCGTACGAA
GTGTTCGTCGAATGACAACGATCGTCCTCTCGCTTCCGCTCTACGGGAAG
CACAAACTACCGACCACCGGTATCCCCTAGTTACCCCACCGCCACCACCA
CGAAGCCAAAGAACAGCACCAGAACTTCCTCCGTTCGTTTCCCCACAGAA
ACGCCCTCCCCTCCCCTCCACCATCCCCAACAAGCGCCCACAAGACCAAT
AACCGGCGTAGCTCCAGGAAATACTTGTTTCGGAGACTCACCCTTGCTGC
CAGTGGACGCGGCGGTTCCTCTCGGGAGGCTGGAGCGAGGGGCGGAGTGC
GGCGCGTCGGTCAGGCTGACGGCGGTCAGGACGGGGCTGGCGCGGCTATC
GACGCTGTGCCTGAGAGATGTCATCACGGGCGCGATTTACGCACCGGCTT
CCCCGTACGAAGTGTTCGTCGAATGA
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