mRNA_H-paniculata_contig4239.10838.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4239.10838.1
Unique NamemRNA_H-paniculata_contig4239.10838.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4239.10838.1 vs. uniprot
Match: D8LIL7_ECTSI (Protein phosphatase 1, regulatory subunit, and related proteins n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIL7_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.700e-29
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 LDTAVIDEDLIGGALVEEADADQTISSMTTFELAQVVAEAATLRLSYKNVLKIDNLQGFSRLTKLC 198
            LDTAVIDEDLIGGAL+EEAD DQ ISSMTTFELAQVVAEA TLRLSYKNVLKIDNLQGFSRLTKLC
Sbjct:   10 LDTAVIDEDLIGGALMEEADGDQHISSMTTFELAQVVAEATTLRLSYKNVLKIDNLQGFSRLTKLC 75
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BLAST of mRNA_H-paniculata_contig4239.10838.1 vs. uniprot
Match: A0A835Z751_9STRA (Protein phosphatase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z751_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 8.070e-20
Identity = 44/66 (66.67%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 LDTAVIDEDLIGGALVEEADADQTISSMTTFELAQVVAEAATLRLSYKNVLKIDNLQGFSRLTKLC 198
            ++ AVIDE++I  AL++E+  DQ ++SM TFELAQVV+ A+TLRLSYK++LKIDNLQGFS LTKLC
Sbjct:   12 VEAAVIDEEMIASALIDESGGDQNMTSMATFELAQVVSAASTLRLSYKHILKIDNLQGFSSLTKLC 77
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BLAST of mRNA_H-paniculata_contig4239.10838.1 vs. uniprot
Match: A0A7S2CTN6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTN6_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.390e-12
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    4 DTAVIDEDLIGGALV-EEADADQTISSMTTFELAQVVAEAATLRLSYKNVLKIDNLQGFSRLTKLC 198
            +TAVID+++I GA   EEA  +    S  T  LA+++ +A TLRLS+KNVLKIDNLQGF+ LTKLC
Sbjct:   47 ETAVIDDEMIAGAFRDEEAAGEGEKKSSGTAVLAEIIGDATTLRLSFKNVLKIDNLQGFNSLTKLC 112
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BLAST of mRNA_H-paniculata_contig4239.10838.1 vs. uniprot
Match: F0YI88_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI88_AURAN)

HSP 1 Score: 59.7 bits (143), Expect = 8.020e-9
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:   13 VIDEDLIGGALVE----EADADQTISSMTTFELAQVVAEAATLRLSYKNVLKIDNLQGFSRLTKLC 198
            VID++LI  AL E    ++  D T   ++   LA +VAEA  L LS+KNVLKIDNLQGF  L KLC
Sbjct:   10 VIDDELIATALRETISTKSPMDATTKELSASALADMVAEATELSLSFKNVLKIDNLQGFQTLRKLC 75
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BLAST of mRNA_H-paniculata_contig4239.10838.1 vs. uniprot
Match: A0A7S3ZLM5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZLM5_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.070e-6
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   13 VIDEDLIGGALVEEADADQTISS----MTTFELAQVVAEAATLRLSYKNVLKIDNLQGFSRLTKLC 198
            VID+DLI  AL E     Q ++S    +    LA + A+A  LRLS+KNVL+IDNLQGF  L  LC
Sbjct:    4 VIDQDLISSALQEGT---QLVTSDGSGINGDTLADIAAKATELRLSFKNVLEIDNLQGFHALRTLC 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4239.10838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LIL7_ECTSI1.700e-2993.94Protein phosphatase 1, regulatory subunit, and rel... [more]
A0A835Z751_9STRA8.070e-2066.67Protein phosphatase 1 n=1 Tax=Tribonema minus TaxI... [more]
A0A7S2CTN6_9STRA2.390e-1257.58Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0YI88_AURAN8.020e-953.03Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3ZLM5_9STRA3.070e-650.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4239contigH-paniculata_contig4239:13059..13772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue3.1e-24
Seed eggNOG ortholog2880.D8LIL7
Preferred namelrrc48
KEGG koko:K11092,ko:K19753
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0001539,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0008150,GO:0009987,GO:0032838,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0048870,GO:0051179,GO:0051674,GO:0060285,GO:0097014,GO:0099568,GO:0120025,GO:0120038
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko04812
Exons2
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930288.1360686-CDS-H-paniculata_contig4239:13058..131631622930288.1360686-CDS-H-paniculata_contig4239:13058..13163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4239 13059..13163 +
1691481226.4433513-CDS-H-paniculata_contig4239:13058..131631691481226.4433513-CDS-H-paniculata_contig4239:13058..13163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4239 13059..13163 +
1622930288.1564796-CDS-H-paniculata_contig4239:13679..137721622930288.1564796-CDS-H-paniculata_contig4239:13679..13772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4239 13680..13772 +
1691481226.4556923-CDS-H-paniculata_contig4239:13679..137721691481226.4556923-CDS-H-paniculata_contig4239:13679..13772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4239 13680..13772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4239.10838.1prot_H-paniculata_contig4239.10838.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4239 13059..13772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4239.10838.1

>prot_H-paniculata_contig4239.10838.1 ID=prot_H-paniculata_contig4239.10838.1|Name=mRNA_H-paniculata_contig4239.10838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
LDTAVIDEDLIGGALVEEADADQTISSMTTFELAQVVAEAATLRLSYKNV
LKIDNLQGFSRLTKLC
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mRNA from alignment at H-paniculata_contig4239:13059..13772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4239.10838.1 ID=mRNA_H-paniculata_contig4239.10838.1|Name=mRNA_H-paniculata_contig4239.10838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=714bp|location=Sequence derived from alignment at H-paniculata_contig4239:13059..13772+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGACACAGCTGTAATAGACGAGGACTTGATTGGTGGAGCTCTGGTAGA
GGAGGCCGACGCAGATCAAACCATTTCTTCCATGACAACTTTCGAGCTGG
CACAGGTACGTGCGTGCTCGTCGGAGTATTGGTATTCCAATGAGCCAACA
GGTGAACGATGCATGGCGCCGATCGATTGCAAGCAGCGAATCAAATATCA
AGTAGGTAGATACGTCACAAGCAAAACGTCAGTACATCTGTCCGTTTTTG
ATCGCTTGGTTTATCTGCTGTGTCGGTAGCTCTTTTTTGTTTTCGTCGGT
TCATCATACATGTCATATATTCCACGCCCGCTTGTACATCGGTGATGCGA
TACCCCAACAAGCAAGCTTGATATCCTACAACGCCGGCTAGCTACCAAAC
TTGAGAGTTTAATGACAATTCTAATCTGTCAGACGTGAACCGAATCACGT
TAATTGTATTTCTCTAAAACGAATCATATAAGCGTAAGTTACACACTACA
GAGAGCTACTATGTACCGTCGAACGTTGCTATTTGTACTCTTTTTATGCT
GTTGCTCTTGCATGGTGCGCGGTAACTCACGAGCATTCGTTAACTTGGAT
ATTTTGTTGTTTGCACTCCAGGTGGTGGCAGAGGCTGCCACCTTGCGCCT
GTCTTACAAAAACGTACTCAAGATCGACAACCTCCAGGGGTTCTCTCGCT
TAACGAAGCTGTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig4239:13059..13772+

>mRNA_H-paniculata_contig4239.10838.1 ID=mRNA_H-paniculata_contig4239.10838.1|Name=mRNA_H-paniculata_contig4239.10838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig4239:13059..13772+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGACACAGCTGTAATAGACGAGGACTTGATTGGTGGAGCTCTGGTAGA
GGAGGCCGACGCAGATCAAACCATTTCTTCCATGACAACTTTCGAGCTGG
CACAGCTCGACACAGCTGTAATAGACGAGGACTTGATTGGTGGAGCTCTG
GTAGAGGAGGCCGACGCAGATCAAACCATTTCTTCCATGACAACTTTCGA
GCTGGCACAGGTGGTGGCAGAGGCTGCCACCTTGCGCCTGTCTTACAAAA
ACGTACTCAAGATCGACAACCTCCAGGGGTTCTCTCGCTTAACGAAGCTG
TGCGTGGTGGCAGAGGCTGCCACCTTGCGCCTGTCTTACAAAAACGTACT
CAAGATCGACAACCTCCAGGGGTTCTCTCGCTTAACGAAGCTGTGC
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