mRNA_H-paniculata_contig42378.10835.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42378.10835.1
Unique NamemRNA_H-paniculata_contig42378.10835.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42378.10835.1 vs. uniprot
Match: D8LFB6_ECTSI (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFB6_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 7.940e-16
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 1
Query:    7 GAKIVNAIPTRRLGDPKELEGLLMLMASDNASSYMTGSVVTLDGGIALSNL 159
            G +IV AIP RRLGDP EL+GLL+++AS+ ASSYMTGSV+TLDGGI LS+L
Sbjct:  210 GDRIVKAIPMRRLGDPSELDGLLLMLASERASSYMTGSVLTLDGGIMLSHL 260          
BLAST of mRNA_H-paniculata_contig42378.10835.1 vs. uniprot
Match: A0A2E5Q5E8_9PROT (2-deoxy-D-gluconate 3-dehydrogenase n=4 Tax=root TaxID=1 RepID=A0A2E5Q5E8_9PROT)

HSP 1 Score: 64.7 bits (156), Expect = 4.490e-11
Identity = 31/51 (60.78%), Postives = 42/51 (82.35%), Query Frame = 1
Query:    7 GAKIVNAIPTRRLGDPKELEGLLMLMASDNASSYMTGSVVTLDGGIALSNL 159
            GA+++  IP RR+GDP EL+G+L+L+ASD ASSYMTGS++T+DGG   S L
Sbjct:  207 GARMIKRIPMRRVGDPGELDGVLLLLASD-ASSYMTGSIITVDGGHLQSTL 256          
BLAST of mRNA_H-paniculata_contig42378.10835.1 vs. uniprot
Match: A0A3L7E0Q7_9GAMM (SDR family oxidoreductase n=2 Tax=Seongchinamella sediminis TaxID=2283635 RepID=A0A3L7E0Q7_9GAMM)

HSP 1 Score: 63.5 bits (153), Expect = 1.120e-10
Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = 1
Query:    7 GAKIVNAIPTRRLGDPKELEGLLMLMASDNASSYMTGSVVTLDGGIALS 153
            G +++  IP RRLG P+EL+G+L+L+AS NA SYMTGSVVT+DGG++LS
Sbjct:  199 GRQMLRRIPQRRLGSPEELDGVLLLLAS-NALSYMTGSVVTVDGGLSLS 246          
BLAST of mRNA_H-paniculata_contig42378.10835.1 vs. uniprot
Match: A0A3D5FD65_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5FD65_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 5.590e-10
Identity = 29/51 (56.86%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    7 GAKIVNAIPTRRLGDPKELEGLLMLMASDNASSYMTGSVVTLDGGIALSNL 159
            GA++V  +P RR+ +P EL+G L+L+AS  ASSYMTGSV+T+DGG   S+L
Sbjct:    6 GARMVQQVPQRRVAEPHELDGPLLLLAS-GASSYMTGSVITVDGGHLNSSL 55          
BLAST of mRNA_H-paniculata_contig42378.10835.1 vs. uniprot
Match: A0A5C9A8T5_9GAMM (SDR family oxidoreductase n=1 Tax=Parahaliea maris TaxID=2716870 RepID=A0A5C9A8T5_9GAMM)

HSP 1 Score: 61.2 bits (147), Expect = 8.610e-10
Identity = 28/51 (54.90%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    7 GAKIVNAIPTRRLGDPKELEGLLMLMASDNASSYMTGSVVTLDGGIALSNL 159
            G K+   IP RRLG+P +L+G+++L+AS  ASSYMTGSV+T+DGG+ +S +
Sbjct:  206 GKKLEKRIPQRRLGNPADLDGVILLLAS-KASSYMTGSVITVDGGLTMSTI 255          
BLAST of mRNA_H-paniculata_contig42378.10835.1 vs. uniprot
Match: A0A2A5DVH6_9PROT (2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2A5DVH6_9PROT)

HSP 1 Score: 61.2 bits (147), Expect = 8.750e-10
Identity = 30/53 (56.60%), Postives = 43/53 (81.13%), Query Frame = 1
Query:    1 GQGAKIVNAIPTRRLGDPKELEGLLMLMASDNASSYMTGSVVTLDGGIALSNL 159
            G+G +I   IP RRLG P++L+G L+L+AS NASS+MTGSV+T+DGG +++ L
Sbjct:  206 GEGERIKQRIPLRRLGSPEDLDGALLLLAS-NASSFMTGSVLTVDGGQSVNPL 257          
BLAST of mRNA_H-paniculata_contig42378.10835.1 vs. uniprot
Match: UPI0010C9F353 (glucose 1-dehydrogenase n=1 Tax=Rhodoligotrophos defluvii TaxID=2561934 RepID=UPI0010C9F353)

HSP 1 Score: 60.8 bits (146), Expect = 1.270e-9
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:    4 QGAKIVNAIPTRRLGDPKELEGLLMLMASDNASSYMTGSVVTLDGGIALS 153
            +G  +   IP  R+GDP EL+G L+L+AS  ASS+MTGSVVT+DGG ++S
Sbjct:  211 KGEYLKRGIPQNRIGDPSELDGALLLLASPRASSFMTGSVVTVDGGQSIS 260          
BLAST of mRNA_H-paniculata_contig42378.10835.1 vs. uniprot
Match: A0A2Z4RGT7_PSEPU (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Pseudomonas putida TaxID=303 RepID=A0A2Z4RGT7_PSEPU)

HSP 1 Score: 60.5 bits (145), Expect = 1.670e-9
Identity = 29/52 (55.77%), Postives = 42/52 (80.77%), Query Frame = 1
Query:    4 QGAKIVNAIPTRRLGDPKELEGLLMLMASDNASSYMTGSVVTLDGGIALSNL 159
            QGA ++  IP +RLG P+EL+G L+L+A+  ASS+MTGSV+T+DGG  +S+L
Sbjct:  206 QGAALIKRIPMQRLGTPQELDGALLLLATQ-ASSWMTGSVITVDGGHVISSL 256          
BLAST of mRNA_H-paniculata_contig42378.10835.1 vs. uniprot
Match: A0A2S6UHS1_9PROT (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha3_Bin4 TaxID=2013070 RepID=A0A2S6UHS1_9PROT)

HSP 1 Score: 60.1 bits (144), Expect = 2.300e-9
Identity = 28/51 (54.90%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    7 GAKIVNAIPTRRLGDPKELEGLLMLMASDNASSYMTGSVVTLDGGIALSNL 159
            GAK++  IP RR+G P++L+G L+L+ASD AS YMTGS++ +DGG  +S+L
Sbjct:  206 GAKLIRRIPQRRIGRPEDLDGSLLLLASD-ASGYMTGSIIPVDGGHLVSSL 255          
BLAST of mRNA_H-paniculata_contig42378.10835.1 vs. uniprot
Match: UPI001866736D (glucose 1-dehydrogenase n=2 Tax=Nisaea TaxID=390876 RepID=UPI001866736D)

HSP 1 Score: 60.1 bits (144), Expect = 2.320e-9
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1
Query:    7 GAKIVNAIPTRRLGDPKELEGLLMLMASDNASSYMTGSVVTLDGGIAL 150
            G K+V  IP RRLG P++L+G L+L+ASD  + YMTGSVVT+DGG  L
Sbjct:  209 GQKMVKTIPQRRLGQPEDLDGALLLLASDQGA-YMTGSVVTVDGGFVL 255          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42378.10835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFB6_ECTSI7.940e-1672.552,3-dihydro-2,3-dihydroxybenzoate dehydrogenase n=... [more]
A0A2E5Q5E8_9PROT4.490e-1160.782-deoxy-D-gluconate 3-dehydrogenase n=4 Tax=root T... [more]
A0A3L7E0Q7_9GAMM1.120e-1063.27SDR family oxidoreductase n=2 Tax=Seongchinamella ... [more]
A0A3D5FD65_9GAMM5.590e-1056.86Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A5C9A8T5_9GAMM8.610e-1054.90SDR family oxidoreductase n=1 Tax=Parahaliea maris... [more]
A0A2A5DVH6_9PROT8.750e-1056.602-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Rhodos... [more]
UPI0010C9F3531.270e-956.00glucose 1-dehydrogenase n=1 Tax=Rhodoligotrophos d... [more]
A0A2Z4RGT7_PSEPU1.670e-955.77SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A2S6UHS1_9PROT2.300e-954.902-dehydro-3-deoxy-D-gluconate 5-dehydrogenase n=1 ... [more]
UPI001866736D2.320e-960.42glucose 1-dehydrogenase n=2 Tax=Nisaea TaxID=39087... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42378contigH-paniculata_contig42378:1374..1535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue1.7e-12
Seed eggNOG ortholog2880.D8LFB6
KEGG rclassRC00029,RC00117
KEGG koko:K00059
KEGG ReactionR04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671
KEGG Pathwayko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212
KEGG ModuleM00083,M00572
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG0725@2759
EC1.1.1.100
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930287.8961465-CDS-H-paniculata_contig42378:1373..15351622930287.8961465-CDS-H-paniculata_contig42378:1373..1535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42378 1374..1535 -
1691481226.3708835-CDS-H-paniculata_contig42378:1373..15351691481226.3708835-CDS-H-paniculata_contig42378:1373..1535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42378 1374..1535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42378.10835.1prot_H-paniculata_contig42378.10835.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42378 1374..1535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42378.10835.1

>prot_H-paniculata_contig42378.10835.1 ID=prot_H-paniculata_contig42378.10835.1|Name=mRNA_H-paniculata_contig42378.10835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
GQGAKIVNAIPTRRLGDPKELEGLLMLMASDNASSYMTGSVVTLDGGIAL
SNL*
back to top

mRNA from alignment at H-paniculata_contig42378:1374..1535-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42378.10835.1 ID=mRNA_H-paniculata_contig42378.10835.1|Name=mRNA_H-paniculata_contig42378.10835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at H-paniculata_contig42378:1374..1535- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACAGGGCGCAAAGATCGTCAACGCCATCCCCACTCGACGTCTGGGGGA TCCGAAGGAACTAGAAGGCTTGTTGATGCTCATGGCATCGGACAACGCAT CCAGCTACATGACGGGGTCCGTGGTCACTCTCGATGGAGGGATCGCACTC AGTAATTTGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig42378:1374..1535-

>mRNA_H-paniculata_contig42378.10835.1 ID=mRNA_H-paniculata_contig42378.10835.1|Name=mRNA_H-paniculata_contig42378.10835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig42378:1374..1535- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACAGGGCGCAAAGATCGTCAACGCCATCCCCACTCGACGTCTGGGGGA
TCCGAAGGAACTAGAAGGCTTGTTGATGCTCATGGCATCGGACAACGCAT
CCAGCTACATGACGGGGTCCGTGGTCACTCTCGATGGAGGGATCGCACTC
AGTAATTTGTGAGGACAGGGCGCAAAGATCGTCAACGCCATCCCCACTCG
ACGTCTGGGGGATCCGAAGGAACTAGAAGGCTTGTTGATGCTCATGGCAT
CGGACAACGCATCCAGCTACATGACGGGGTCCGTGGTCACTCTCGATGGA
GGGATCGCACTCAGTAATTTGTGA
back to top