mRNA_H-paniculata_contig4237.10833.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4237.10833.1
Unique NamemRNA_H-paniculata_contig4237.10833.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4237.10833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4237contigH-paniculata_contig4237:1626..4789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size787
Cds size786
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4237.10833.1prot_H-paniculata_contig4237.10833.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4237 1626..4789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930287.6273205-CDS-H-paniculata_contig4237:1625..17931622930287.6273205-CDS-H-paniculata_contig4237:1625..1793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4237 1626..1793 +
1691481226.2477977-CDS-H-paniculata_contig4237:1625..17931691481226.2477977-CDS-H-paniculata_contig4237:1625..1793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4237 1626..1793 +
1622930287.6463888-CDS-H-paniculata_contig4237:2222..24291622930287.6463888-CDS-H-paniculata_contig4237:2222..2429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4237 2223..2429 +
1691481226.263507-CDS-H-paniculata_contig4237:2222..24291691481226.263507-CDS-H-paniculata_contig4237:2222..2429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4237 2223..2429 +
1622930287.6739-CDS-H-paniculata_contig4237:3819..41071622930287.6739-CDS-H-paniculata_contig4237:3819..4107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4237 3820..4107 +
1691481226.2728102-CDS-H-paniculata_contig4237:3819..41071691481226.2728102-CDS-H-paniculata_contig4237:3819..4107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4237 3820..4107 +
1622930287.6889946-CDS-H-paniculata_contig4237:4666..47891622930287.6889946-CDS-H-paniculata_contig4237:4666..4789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4237 4667..4789 +
1691481226.2803612-CDS-H-paniculata_contig4237:4666..47891691481226.2803612-CDS-H-paniculata_contig4237:4666..4789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4237 4667..4789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4237.10833.1

>prot_H-paniculata_contig4237.10833.1 ID=prot_H-paniculata_contig4237.10833.1|Name=mRNA_H-paniculata_contig4237.10833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=262bp
DDRPPSREELAAFVLSKDIDVDAVLEAERREDLERMMAETGGVSAATGEC
EETVNVDKSQLYETEIFGLNSDNPKSDPSNILQLSFSPSMTHLALTGAVR
DHCIMSSPSASSNVSNDDDHGDDVTDARAAAVVVAASGGSSAAERGAHAA
CSTVGPLHRLREERQRASMSLSSSRGVNEGDEKDGDGDHNALLNRRATEM
IPRASESGGVSEEAASAAAGEIEGVLLMSPSTSNSPPRPGAVSRLPSSNG
ILGYASSAVAAA
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mRNA from alignment at H-paniculata_contig4237:1626..4789+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4237.10833.1 ID=mRNA_H-paniculata_contig4237.10833.1|Name=mRNA_H-paniculata_contig4237.10833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3164bp|location=Sequence derived from alignment at H-paniculata_contig4237:1626..4789+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGACAGACCACCTTCTAGGGAGGAGTTGGCGGCGTTTGTCTTGTCGAA
AGATATTGACGTCGACGCGGTTCTGGAGGCTGAAAGGCGTGAGGATCTGG
AGAGAATGATGGCTGAGACGGGTGGGGTGTCGGCGGCGACGGGGGAGTGT
GAGGAGACGGTTAATGTGGTGAGTGAGTGAGAATTTGTGTGTGTGTGTCG
TGTTTTTGTTAGTCTTGTGGTATATTCTCAAGAGTGTGTATAGTCACAAG
GTGGTTTGGACGTGAAGCAATCGAGCCGTGGGCTAGTGGATGATGGCAGG
TGAAGGGTTCAATGCTTATGTGCATCGAGACTGTTTTTCGAATCGTTTTG
TGATGTTTTTCAACGGCGTCAAGGAAAAAGAAACGTATTTCGAATATGAA
AAGTGTAGCAATCGAGCCATGGAGTAATTAATTTTGACAGGTGAACGATT
TATATATCAGGTGAAGGTCGATGTGAACCAATGAAGGTGATCGTGGATCG
GATACAATTATTACCCCTTTCAAATAATGACACCTACCCCCCCCCCCGTG
CACACTCGACCATGCGACTTTCCTGCCACCCTTTTATCGTCAATCAGGAC
AAGAGCCAGCTCTACGAAACCGAAATATTCGGGCTAAACTCAGACAACCC
GAAATCTGACCCTAGCAACATCCTCCAGCTGTCGTTCAGCCCGAGCATGA
CGCATCTCGCCCTGACCGGTGCTGTGCGCGACCACTGCATAATGTCCAGT
CCGAGCGCAAGTTCGAACGTGTCCAATGATGATGATCATGGTGACGACGT
AACGGTACGTGGAGTCTGGGGAGCGGGGGTTGATGCCTGTCCTAGCTCTT
GATTGTTTGGTTGGTTCCGGTTTGACGCGTTCTGATTTTACTGTAGATAC
GTGTGTGCCTCACGTGCTCTCTGAGTTGGTACATTTGCTTTCGAAAATAT
TTTGTGCGCTAGTCAGTCTCCACAATTTTCCACCTGACCAAAACAATACT
TGATCTTTGCTTTATTCTTGTTTTTTTGTCTCAGGCTGAACGGTTTTTGT
TCCGCAATTAAAATATTTGCTTACTTGTGTGATATGTTCTGAGCAATTGG
TCAACCGGCTTCAAACCCTTTGAGCCCGACACTTCGACTGGATACCACAC
TGTTCTTGTTTGTAGTTTCGCGTAAGGTTGGGAGAAGTAAGAATTGGTGC
TTTTGACCTCCAGCTCGAGTGTGGCACCGTGCCGTGCCTTGAACACATTT
TTAGTCAAGTCGAAAAATCCGTGCGCACCGAACTTCCAGGTAGACGAAGG
TGAAAAAACTCTCAAGCCACATTTGGCAACGTAGGAGAGAGTGATTGACA
ATCGGAAATCGCTCTGATTGGGATAACCTCTGTCCATCTCTAGGTTATAT
GTGTGGTCAATCGTTCAACAACTAAGGCATACAAAACATGAACCCCTCCC
TCCCCCATCCCCTAGCCTGATCGGTATTCGAACGCAGATATCACGTCTAA
GGGCCCATCGTTCAGGGGCTACGTGTGGTCGTGGCCAATAATTATCGTTA
TTTGCAGCTGTCATCATCAGTTGCAGCTTTGTACTTCGTTGATCCGAGGT
CAAAATAGAAATTGGTATAGCACAAGACACGGACTGCACGGGGGGAATAT
TTCAGATATTGAAGTATTGAAAAATTAGAGTGAAATATGTGCCTTTTTTC
ACATTTGCAGAAATACCGTTGATGAAAACAACGGTTGCAAGGTATCTGTC
AAGTTTCGGCTCTTTTTTAACGACTTGAGAATATGAAACTTGGCAAATCT
CCCAAATTTCCCAAATTTTGCCTTCTCAGTAGTGACCCTAAGACAGAGCG
TGTATTTAGACATCGTACGTACGTACACTGCAACAACCTATTTCTTATCT
CTCGCGCACTAACGACTATTCCGTCAAGATACCGAATACAAATGTATACA
ACAATCATATGATAGCCTCGTCTTTTTTGGGGGCGGTGGGGGTTGCGCAC
CAAAAGATATTTATTTTTCTCGGCTGAAACGTGGGATATTTTTTGCCCAA
CGAAATCAGCAATTTAGGTCTTGTACGTTGACTGCTTGTTTTTTTTTCTG
GGCGTTTTATGTGTGAGCTATACCGACAAAATCAACTGTGCGACAAACCA
TATTTGAAAAAAACGACTACATCTAAAATACCTCGTTGCTACAGGATGCG
AGGGCAGCGGCGGTCGTGGTGGCGGCGTCGGGGGGATCATCTGCGGCGGA
GAGGGGAGCGCACGCCGCCTGCAGCACTGTCGGTCCGTTGCATAGACTGC
GTGAGGAGCGGCAGAGGGCATCAATGTCACTGTCAAGCAGTCGTGGAGTG
AACGAAGGGGATGAGAAGGATGGTGATGGGGATCACAATGCCTTGCTCAA
CCGCAGGGCGACAGAGATGATACCGCGGGCGTCTGAATCTGGCGGTGTCT
CGGAAGAGGCTGCTAGTGCTGCGGCCGGCGAGGTCAGCGGGTCGTCGCTG
TGTTGTATTTTATATTCGAATAATTCTTCTGACTTGAAAGGCAGGGGGGA
GAAAGGAACCTCTGAGTTACTCGGCATGATGTTTCTTGTTGACGTTTTGG
TACCTAGTGTTTCATTGTTTTGATGAATAATTCCAAAAATGTTTAACGAC
AGCCTGGCCGACCTGGCCCAAAAGCAGCTCTCAAGCCCTTCGAAGTTCCG
CTCGACCTAAACGTAAGGTTTCGAAAGCATAGCGCGCGAGAGACATCTTC
GGCATGCCTGGGCAAGATGATGATTTGGGAGGTAGACTGCCTAGATCCTG
GCCACAACCCGTCGCCCAACCTGGTATTAGTATGCACATGGAATGGGGCA
TCGGTGATGCCATCGTTGATATGGTCCTGCCAGTTTGGCGTGGTCGCGCA
GTTTCGGTTGGCCACTCGCTTATCAAGTCGTGGTCTCATCACAATGAGCA
CATTCCGTTGTCAGACAGCCGCTTACGCCCTGCTGTCCTTGCTCCCCTTG
TGGCCCCTGCCCCCTTCCCCATGCGAATGCCCGTGTGACAGATCGAAGGC
GTTCTTCTAATGTCACCATCTACATCCAACTCTCCCCCTAGGCCAGGAGC
GGTCAGCCGTCTCCCCTCATCCAACGGTATTCTTGGGTATGCTTCCTCCG
CCGTCGCGGCCGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig4237:1626..4789+

>mRNA_H-paniculata_contig4237.10833.1 ID=mRNA_H-paniculata_contig4237.10833.1|Name=mRNA_H-paniculata_contig4237.10833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1572bp|location=Sequence derived from alignment at H-paniculata_contig4237:1626..4789+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGACAGACCACCTTCTAGGGAGGAGTTGGCGGCGTTTGTCTTGTCGAA
AGATATTGACGTCGACGCGGTTCTGGAGGCTGAAAGGCGTGAGGATCTGG
AGAGAATGATGGCTGAGACGGGTGGGGTGTCGGCGGCGACGGGGGAGTGT
GAGGAGACGGTTAATGTGGACGACAGACCACCTTCTAGGGAGGAGTTGGC
GGCGTTTGTCTTGTCGAAAGATATTGACGTCGACGCGGTTCTGGAGGCTG
AAAGGCGTGAGGATCTGGAGAGAATGATGGCTGAGACGGGTGGGGTGTCG
GCGGCGACGGGGGAGTGTGAGGAGACGGTTAATGTGGACAAGAGCCAGCT
CTACGAAACCGAAATATTCGGGCTAAACTCAGACAACCCGAAATCTGACC
CTAGCAACATCCTCCAGCTGTCGTTCAGCCCGAGCATGACGCATCTCGCC
CTGACCGGTGCTGTGCGCGACCACTGCATAATGTCCAGTCCGAGCGCAAG
TTCGAACGTGTCCAATGATGATGATCATGGTGACGACGTAACGGACAAGA
GCCAGCTCTACGAAACCGAAATATTCGGGCTAAACTCAGACAACCCGAAA
TCTGACCCTAGCAACATCCTCCAGCTGTCGTTCAGCCCGAGCATGACGCA
TCTCGCCCTGACCGGTGCTGTGCGCGACCACTGCATAATGTCCAGTCCGA
GCGCAAGTTCGAACGTGTCCAATGATGATGATCATGGTGACGACGTAACG
GATGCGAGGGCAGCGGCGGTCGTGGTGGCGGCGTCGGGGGGATCATCTGC
GGCGGAGAGGGGAGCGCACGCCGCCTGCAGCACTGTCGGTCCGTTGCATA
GACTGCGTGAGGAGCGGCAGAGGGCATCAATGTCACTGTCAAGCAGTCGT
GGAGTGAACGAAGGGGATGAGAAGGATGGTGATGGGGATCACAATGCCTT
GCTCAACCGCAGGGCGACAGAGATGATACCGCGGGCGTCTGAATCTGGCG
GTGTCTCGGAAGAGGCTGCTAGTGCTGCGGCCGGCGAGGATGCGAGGGCA
GCGGCGGTCGTGGTGGCGGCGTCGGGGGGATCATCTGCGGCGGAGAGGGG
AGCGCACGCCGCCTGCAGCACTGTCGGTCCGTTGCATAGACTGCGTGAGG
AGCGGCAGAGGGCATCAATGTCACTGTCAAGCAGTCGTGGAGTGAACGAA
GGGGATGAGAAGGATGGTGATGGGGATCACAATGCCTTGCTCAACCGCAG
GGCGACAGAGATGATACCGCGGGCGTCTGAATCTGGCGGTGTCTCGGAAG
AGGCTGCTAGTGCTGCGGCCGGCGAGATCGAAGGCGTTCTTCTAATGTCA
CCATCTACATCCAACTCTCCCCCTAGGCCAGGAGCGGTCAGCCGTCTCCC
CTCATCCAACGGTATTCTTGGGTATGCTTCCTCCGCCGTCGCGGCCGCGA
TCGAAGGCGTTCTTCTAATGTCACCATCTACATCCAACTCTCCCCCTAGG
CCAGGAGCGGTCAGCCGTCTCCCCTCATCCAACGGTATTCTTGGGTATGC
TTCCTCCGCCGTCGCGGCCGCG
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