mRNA_H-paniculata_contig4237.10832.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4237.10832.1
Unique NamemRNA_H-paniculata_contig4237.10832.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4237.10832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4237contigH-paniculata_contig4237:769..1570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size215
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930287.5596855-CDS-H-paniculata_contig4237:768..7911622930287.5596855-CDS-H-paniculata_contig4237:768..791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4237 769..791 +
1691481226.2267315-CDS-H-paniculata_contig4237:768..7911691481226.2267315-CDS-H-paniculata_contig4237:768..791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4237 769..791 +
1622930287.5788047-CDS-H-paniculata_contig4237:1378..15681622930287.5788047-CDS-H-paniculata_contig4237:1378..1568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4237 1379..1568 +
1691481226.2383983-CDS-H-paniculata_contig4237:1378..15681691481226.2383983-CDS-H-paniculata_contig4237:1378..1568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4237 1379..1568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4237.10832.1prot_H-paniculata_contig4237.10832.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4237 769..1568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4237.10832.1

>prot_H-paniculata_contig4237.10832.1 ID=prot_H-paniculata_contig4237.10832.1|Name=mRNA_H-paniculata_contig4237.10832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
ATAAGDDRSPATAPPDIPTSSAALAADTSRHDPPRNPDPLGSRDISTGQP
PMSHVLSEGGLPPTLSSPPLP
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mRNA from alignment at H-paniculata_contig4237:769..1570+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4237.10832.1 ID=mRNA_H-paniculata_contig4237.10832.1|Name=mRNA_H-paniculata_contig4237.10832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=802bp|location=Sequence derived from alignment at H-paniculata_contig4237:769..1570+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAACAGCAGCAGGAGATGATCGGTGGGTGCCGTAAGTCGCCCAGGCTTG
CCCTAAGTGTAGTGAAAGAGTTGTGCGTGTGTGTGCGCGCGCGCGTGCAG
ACACGTCGTAACGTAGTGTAAACATATAACGCTGCACCTGCCTGGCTTTT
GCTTCCATGCTTTAATTGGGTTTCTGTCCAATGCGTGGAGAGGATTCATA
CGTGTCGATGAGACCAAGTTTTTTTAATCTTTCACCTTATACAAACGCGA
TTTCGTTGTTCTAAGGGATGTACAGTCGGGAAGAGTGTTGGAAGAACATG
GCGAGCCAAGAACGTTCAAAGGCCATTGCGAGACAGTTGGATATATAATA
CTAAATGCACACACACTTGTGTGCGTCCACCAGTGTCAGCTTCCGTTAGC
ACCCGATTTCGTTTATTTCCGTCTTGAATTGACGGGTGGGAGAAACTCAC
TTTTTTATGACAAAGGGCGGGGATGTATTCTTTTTTGGCAAAAATATGGG
AAAATTCATATTGCTACTGAGTCGGTCTTGCTGTGCCTGCGTTCAAGCCT
CAGAAACTGATCACAGCGATATATATATTCCCCTCCCTCCCTCCCTTTCG
GCACGCACAGATCACCTGCCACTGCACCCCCTGATATACCCACCTCCTCT
GCCGCACTAGCTGCCGACACCTCCCGCCACGACCCCCCCCGCAACCCCGA
TCCCTTGGGCAGCCGCGACATTAGCACGGGTCAGCCGCCCATGTCCCACG
TCCTCTCGGAGGGTGGACTCCCACCGACTCTTTCTTCGCCGCCGCTGCCG
CC
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Coding sequence (CDS) from alignment at H-paniculata_contig4237:769..1570+

>mRNA_H-paniculata_contig4237.10832.1 ID=mRNA_H-paniculata_contig4237.10832.1|Name=mRNA_H-paniculata_contig4237.10832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig4237:769..1570+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAACAGCAGCAGGAGATGATCGGCAACAGCAGCAGGAGATGATCGATCA
CCTGCCACTGCACCCCCTGATATACCCACCTCCTCTGCCGCACTAGCTGC
CGACACCTCCCGCCACGACCCCCCCCGCAACCCCGATCCCTTGGGCAGCC
GCGACATTAGCACGGGTCAGCCGCCCATGTCCCACGTCCTCTCGGAGGGT
GGACTCCCACCGACTCTTTCTTCGCCGCCGCTGCCGATCACCTGCCACTG
CACCCCCTGATATACCCACCTCCTCTGCCGCACTAGCTGCCGACACCTCC
CGCCACGACCCCCCCCGCAACCCCGATCCCTTGGGCAGCCGCGACATTAG
CACGGGTCAGCCGCCCATGTCCCACGTCCTCTCGGAGGGTGGACTCCCAC
CGACTCTTTCTTCGCCGCCGCTGCCG
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