mRNA_H-paniculata_contig42363.10831.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42363.10831.1
Unique NamemRNA_H-paniculata_contig42363.10831.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig42363.10831.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 254 bits (650), Expect = 7.970e-85
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 1 
Query:   82 RIMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 495
            +IMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   13 KIMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
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BLAST of mRNA_H-paniculata_contig42363.10831.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 253 bits (647), Expect = 1.430e-84
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   88 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 495
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_H-paniculata_contig42363.10831.1 vs. uniprot
Match: A0A1D1XI99_9ARAE (Histone H3.2 (Fragment) n=2 Tax=cellular organisms TaxID=131567 RepID=A0A1D1XI99_9ARAE)

HSP 1 Score: 254 bits (648), Expect = 2.180e-84
Identity = 136/151 (90.07%), Postives = 139/151 (92.05%), Query Frame = 1 
Query:   43 SPASVFNPLFHLSRIMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 495
            S     NP F   R MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    9 STTETLNPSFSFGREMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 159
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BLAST of mRNA_H-paniculata_contig42363.10831.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 253 bits (646), Expect = 2.480e-84
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 1 
Query:   76 LSRIMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 495
            ++  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    3 ITETMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
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BLAST of mRNA_H-paniculata_contig42363.10831.1 vs. uniprot
Match: A0A164UB18_9CRUS (Histone H3.2 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164UB18_9CRUS)

HSP 1 Score: 253 bits (647), Expect = 2.610e-84
Identity = 134/141 (95.04%), Postives = 139/141 (98.58%), Query Frame = 1 
Query:   73 HLSRIMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 495
            HL++ MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   14 HLTKTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 154
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BLAST of mRNA_H-paniculata_contig42363.10831.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 255 bits (652), Expect = 2.890e-84
Identity = 138/148 (93.24%), Postives = 141/148 (95.27%), Query Frame = 1 
Query:   58 FNPLFHLSRI--MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 495
            F P FH  +   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   62 FRPTFHQQQTVKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
[Close]
BLAST of mRNA_H-paniculata_contig42363.10831.1 vs. uniprot
Match: A0A1I7S5W3_BURXY (Histone H3 n=1 Tax=Bursaphelenchus xylophilus TaxID=6326 RepID=A0A1I7S5W3_BURXY)

HSP 1 Score: 254 bits (648), Expect = 3.060e-84
Identity = 139/149 (93.29%), Postives = 142/149 (95.30%), Query Frame = 1 
Query:   52 SVFN-PLFHLSRIMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 495
            SVF+ P F  S  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAVLALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   21 SVFSVPDFSSSATMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 169
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BLAST of mRNA_H-paniculata_contig42363.10831.1 vs. uniprot
Match: X1X909_ACYPI (Histone domain-containing protein n=2 Tax=Bilateria TaxID=33213 RepID=X1X909_ACYPI)

HSP 1 Score: 252 bits (643), Expect = 1.180e-83
Identity = 141/157 (89.81%), Postives = 145/157 (92.36%), Query Frame = 1 
Query:   43 SPASVFNPLFHL------SRIMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 495
            S AS+FN LFH       S  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 SGASLFN-LFHRITSSTNSFDMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 157
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BLAST of mRNA_H-paniculata_contig42363.10831.1 vs. uniprot
Match: A0A061GSS0_THECC (Histone superfamily protein n=1 Tax=Theobroma cacao TaxID=3641 RepID=A0A061GSS0_THECC)

HSP 1 Score: 252 bits (643), Expect = 2.240e-83
Identity = 137/148 (92.57%), Postives = 141/148 (95.27%), Query Frame = 1 
Query:   58 FNPLFHLSR--IMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 495
            F+ LFHLS    MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   29 FDNLFHLSSQITMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 176
[Close]
BLAST of mRNA_H-paniculata_contig42363.10831.1 vs. uniprot
Match: A0A0C9RWZ2_9HYME (Histone H3 (Fragment) n=3 Tax=Endopterygota TaxID=33392 RepID=A0A0C9RWZ2_9HYME)

HSP 1 Score: 250 bits (639), Expect = 3.200e-83
Identity = 134/144 (93.06%), Postives = 138/144 (95.83%), Query Frame = 1 
Query:   64 PLFHLSRIMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 495
            PL  +   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 PLKQIFDAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 145
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42363.10831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1BJN3_9STRA7.970e-8598.55Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
W4GZ05_9STRA1.430e-84100.00Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A1D1XI99_9ARAE2.180e-8490.07Histone H3.2 (Fragment) n=2 Tax=cellular organisms... [more]
A0A6V1P6C6_HETAK2.480e-8496.43Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A164UB18_9CRUS2.610e-8495.04Histone H3.2 n=1 Tax=Daphnia magna TaxID=35525 Rep... [more]
K0S7I6_THAOC2.890e-8493.24Histone domain-containing protein n=8 Tax=Bacillar... [more]
A0A1I7S5W3_BURXY3.060e-8493.29Histone H3 n=1 Tax=Bursaphelenchus xylophilus TaxI... [more]
X1X909_ACYPI1.180e-8389.81Histone domain-containing protein n=2 Tax=Bilateri... [more]
A0A061GSS0_THECC2.240e-8392.57Histone superfamily protein n=1 Tax=Theobroma caca... [more]
A0A0C9RWZ2_9HYME3.200e-8393.06Histone H3 (Fragment) n=3 Tax=Endopterygota TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42363contigH-paniculata_contig42363:357..854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score259.6
Seed ortholog evalue9.9e-67
Seed eggNOG ortholog159749.K0S7I6
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histone H3
EggNOG OGs2XDZK@2836,COG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size498
Cds size498
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930287.514584-CDS-H-paniculata_contig42363:356..8541622930287.514584-CDS-H-paniculata_contig42363:356..854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42363 357..854 +
1691481226.2011597-CDS-H-paniculata_contig42363:356..8541691481226.2011597-CDS-H-paniculata_contig42363:356..854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42363 357..854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42363.10831.1prot_H-paniculata_contig42363.10831.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42363 357..854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42363.10831.1

>prot_H-paniculata_contig42363.10831.1 ID=prot_H-paniculata_contig42363.10831.1|Name=mRNA_H-paniculata_contig42363.10831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
TSNPPFPAGHTTSPSPASVFNPLFHLSRIMARTKQTARKSTGGKAPRKQL
ATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL
VREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIM
PKDIQLARRIRGERS*
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mRNA from alignment at H-paniculata_contig42363:357..854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42363.10831.1 ID=mRNA_H-paniculata_contig42363.10831.1|Name=mRNA_H-paniculata_contig42363.10831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=498bp|location=Sequence derived from alignment at H-paniculata_contig42363:357..854+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCAGCAACCCCCCTTTCCCTGCAGGGCACACAACCTCACCTTCCCCCGC
TTCAGTTTTCAATCCACTTTTCCATCTCTCACGCATCATGGCTCGCACGA
AGCAGACCGCCCGTAAGTCTACCGGAGGTAAGGCCCCCCGCAAGCAGCTG
GCTACCAAGGCCGCCCGTAAGTCCGCCCCCGCCACCGGTGGGGTAAAGAA
GCCCCACCGCTACAGGCCTGGCACGGTGGCTCTGCGTGAGATCAGGCGTT
ACCAAAAGTCGACGGAGCTGCTGATCCGTAAGCTACCCTTTCAGCGTCTT
GTTCGCGAGATCGCTCAGGACTTCAAGACCGACCTTCGGTTCCAGGGCTC
CGCTGTGCTCGCCCTGCAGGAGGCCGCGGAGGCATACCTGGTGGGTCTGT
TCGAGGACACGAACTTGTGCGCTATCCACGCGAAGCGTGTAACTATTATG
CCCAAGGACATCCAGCTGGCTCGGCGCATCCGCGGCGAGCGCTCGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig42363:357..854+

>mRNA_H-paniculata_contig42363.10831.1 ID=mRNA_H-paniculata_contig42363.10831.1|Name=mRNA_H-paniculata_contig42363.10831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig42363:357..854+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCAGCAACCCCCCTTTCCCTGCAGGGCACACAACCTCACCTTCCCCCGC
TTCAGTTTTCAATCCACTTTTCCATCTCTCACGCATCATGGCTCGCACGA
AGCAGACCGCCCGTAAGTCTACCGGAGGTAAGGCCCCCCGCAAGCAGCTG
GCTACCAAGGCCGCCCGTAAGTCCGCCCCCGCCACCGGTGGGGTAAAGAA
GCCCCACCGCTACAGGCCTGGCACGGTGGCTCTGCGTGAGATCAGGCGTT
ACCAAAAGTCGACGGAGCTGCTGATCCGTAAGCTACCCTTTCAGCGTCTT
GTTCGCGAGATCGCTCAGGACTTCAAGACCGACCTTCGGTTCCAGGGCTC
CGCTGTGCTCGCCCTGCAGGAGGCCGCGGAGGCATACCTGGTGGGTCTGT
TCGAGGACACGAACTTGTGCGCTATCCACGCGAAGCGTGTAACTATTATG
CCCAAGGACATCCAGCTGGCTCGGCGCATCCGCGGCGAGCGCTCGTAAAC
CAGCAACCCCCCTTTCCCTGCAGGGCACACAACCTCACCTTCCCCCGCTT
CAGTTTTCAATCCACTTTTCCATCTCTCACGCATCATGGCTCGCACGAAG
CAGACCGCCCGTAAGTCTACCGGAGGTAAGGCCCCCCGCAAGCAGCTGGC
TACCAAGGCCGCCCGTAAGTCCGCCCCCGCCACCGGTGGGGTAAAGAAGC
CCCACCGCTACAGGCCTGGCACGGTGGCTCTGCGTGAGATCAGGCGTTAC
CAAAAGTCGACGGAGCTGCTGATCCGTAAGCTACCCTTTCAGCGTCTTGT
TCGCGAGATCGCTCAGGACTTCAAGACCGACCTTCGGTTCCAGGGCTCCG
CTGTGCTCGCCCTGCAGGAGGCCGCGGAGGCATACCTGGTGGGTCTGTTC
GAGGACACGAACTTGTGCGCTATCCACGCGAAGCGTGTAACTATTATGCC
CAAGGACATCCAGCTGGCTCGGCGCATCCGCGGCGAGCGCTCGTAA
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