prot_H-paniculata_contig4222.10818.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4222.10818.1
Unique Nameprot_H-paniculata_contig4222.10818.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length140
Homology
BLAST of mRNA_H-paniculata_contig4222.10818.1 vs. uniprot
Match: D8LF43_ECTSI (RPA_interact_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF43_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 8.670e-64
Identity = 98/140 (70.00%), Postives = 116/140 (82.86%), Query Frame = 0
Query:    1 MMRYIEEACRQEDLRAEAKVLHEYERTRRLEEDALEYAVASNLDDDGLSQD-GVLCPICKRNYLLQAGPPSASIVCACGFRLDTRGDRLSLEYVRQQLAETYAEHSAGCSAEPTFSVEGTSNLEILWSACDGCGFARVVI 139
            MM+YIEEAC++ED RAEA VL +YE TRRLEE+ +EYAVAS  D +G  QD  VLCP+CKR+YLL  GPPSASIVCACGFRLDT GDRL LE+ +QQLA+TY+EHS  CSAEP+F VEG    ++LWS+CDGCGFARVV+
Sbjct:   33 MMQYIEEACKEEDFRAEAAVLEDYELTRRLEEEEVEYAVASLDDINGNGQDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDRLGLEHFKQQLADTYSEHSTACSAEPSFVVEGAPGFDVLWSSCDGCGFARVVL 172          
BLAST of mRNA_H-paniculata_contig4222.10818.1 vs. uniprot
Match: A0A835YX80_9STRA (Replication protein A interacting C-terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX80_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.840e-22
Identity = 47/106 (44.34%), Postives = 61/106 (57.55%), Query Frame = 0
Query:   34 ALEYAVASNLDDDGLSQDGVLCPICKRNYLLQAGPPSASIVCACGFRLDTRGDRLSLEYVRQQLAETYAEHSAGCSAEPTFSVEGTSNLEILWSACDGCGFARVVI 139
            AL  A A   D  G   D VLCP+CK  +LLQ G   A+I+C CGFRL T G+ + L  +RQ LAE + +H   C  +PTF V       +LWS C  CGF ++V+
Sbjct:   54 ALARAAAEAEDGRGWRDDEVLCPVCKGGWLLQHG---ATIMCTCGFRLQTDGEGMQLGVLRQALAEVFTDHRERCHLQPTFRVREEFGAAMLWSECSACGFEQIVL 156          
BLAST of mRNA_H-paniculata_contig4222.10818.1 vs. uniprot
Match: UPI0003F09FB1 (RPA-interacting protein A-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F09FB1)

HSP 1 Score: 80.9 bits (198), Expect = 6.300e-16
Identity = 45/133 (33.83%), Postives = 76/133 (57.14%), Query Frame = 0
Query:    7 EACRQEDLRAEAKVLHEYERTRRLEEDALEYAVASNLDDDGLSQDGVLCPICKRNYLLQAGPPSASIVCACGFRLDTRGDRLSLEYVRQQLAETYAEHSAGCSAEPTFSVEGTSNLEILWSACDGCGFARVVI 139
            E  + E L+ E +++ +YE++R+++E AL  AV      + L  D ++CP+C++N L Q     + I CACG R+DT  D ++L YV+ +L E  ++HS  C+ +  FS      L+ L  AC  C F  +++
Sbjct:  111 EEIKVELLKEEQEIIQDYEKSRQIDEAALCAAV------EKLETDELICPVCRKNPLNQN---KSVIFCACGMRIDTEYDCVTLSYVKDRLKEAISQHSRACTGKALFSTLDQCGLQNLVIACKTCDFLDIIL 234          
BLAST of mRNA_H-paniculata_contig4222.10818.1 vs. uniprot
Match: A0A7S2SC72_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SC72_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.230e-15
Identity = 46/139 (33.09%), Postives = 81/139 (58.27%), Query Frame = 0
Query:    2 MRYIEEACRQEDLRAEAKVLHEYERTRRLEEDALEYAVASNLDDDGLSQDGVLCPICKRNYLLQAGPPSASIVCACGFRLDTRGDRLSLEYVRQQLAETYAEHSAGCSAEPTFSVE-GTSNLEILWSACDGCGFARVVI 139
            M  IEEA   E+ + E  ++ EYE T+  EE AL + +      +G     +LCP+C  + L  +   +A +VC+CG  +D + D +S++YVR++LA+ +  H  GC+++ TF  + G+  ++ L  +C+ CG+  +VI
Sbjct:  120 MMSIEEAILLEEEQREEALVSEYEATQEFEEQALAHTLRHM--PEGSPAATLLCPVCMESDLEHSVTKNA-LVCSCGVEIDLQHDVISIDYVRERLADAFETHREGCTSQLTFFKQNGSLGVDALCGSCEDCGYFTIVI 255          
BLAST of mRNA_H-paniculata_contig4222.10818.1 vs. uniprot
Match: UPI0018D6CED2 (RPA-interacting protein B-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D6CED2)

HSP 1 Score: 78.2 bits (191), Expect = 7.170e-15
Identity = 54/139 (38.85%), Postives = 74/139 (53.24%), Query Frame = 0
Query:    1 MMRYIEEACRQEDLRAEAKVLHEYERTRRLEEDALEYAVASNLDDDGLSQDGVLCPICKRNYLLQAGPPSASIVCACGFRLDTRGDRLSLEYVRQQLAETYAEHSAGCSAEPTFSVEGTSNLEILWSACDGCGFARVVI 139
            +M  +EE  R E +  E  ++ EYE + +L E +L  A    LD D LS     CPICKRN L+ +      I CACG R++T  D ++L  VRQQL     +HSA C  +P F+V    N + L  +C  C F  +VI
Sbjct:  111 VMSLVEEIQR-ELMAEENAIIAEYEASLQLAEASLS-ATVEQLDIDELS-----CPICKRNPLMLS---KGVIFCACGIRINTEQDCITLANVRQQLENGVGQHSALCHGQPVFTVTDAFNAQNLVLSCQTCDFLYIVI 239          
BLAST of mRNA_H-paniculata_contig4222.10818.1 vs. uniprot
Match: A0A1S3K953_LINUN (RPA-interacting protein A isoform X2 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3K953_LINUN)

HSP 1 Score: 77.0 bits (188), Expect = 1.510e-14
Identity = 48/133 (36.09%), Postives = 69/133 (51.88%), Query Frame = 0
Query:    7 EACRQEDLRAEAKVLHEYERTRRLEEDALEYAVASNLDDDGLSQDGVLCPICKRNYLLQAGPPSASIVCACGFRLDTRGDRLSLEYVRQQLAETYAEHSAGCSAEPTFSVEGTSNLEILWSACDGCGFARVVI 139
            E  + E L  E ++L EYE++   +E  L  A+      D L  D V+CPICK+N L+Q       I C CG R+DT  D L++  ++ QL E  + H+  C  E  FSV   + +E L   C+ C F  +VI
Sbjct:  100 EEIKSELLLEEQRILEEYEKSLAFDEAGLCAAI------DQLKTDEVICPICKKNPLMQN---KQIIFCCCGMRIDTELDGLNIANIKSQLEEGISLHNTQCVKEAKFSVMKQAGVENLLMTCETCDFMFIVI 223          
BLAST of mRNA_H-paniculata_contig4222.10818.1 vs. uniprot
Match: A0A1S3K944_LINUN (RPA-interacting protein B isoform X1 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3K944_LINUN)

HSP 1 Score: 77.0 bits (188), Expect = 2.210e-14
Identity = 48/133 (36.09%), Postives = 69/133 (51.88%), Query Frame = 0
Query:    7 EACRQEDLRAEAKVLHEYERTRRLEEDALEYAVASNLDDDGLSQDGVLCPICKRNYLLQAGPPSASIVCACGFRLDTRGDRLSLEYVRQQLAETYAEHSAGCSAEPTFSVEGTSNLEILWSACDGCGFARVVI 139
            E  + E L  E ++L EYE++   +E  L  A+      D L  D V+CPICK+N L+Q       I C CG R+DT  D L++  ++ QL E  + H+  C  E  FSV   + +E L   C+ C F  +VI
Sbjct:  124 EEIKSELLLEEQRILEEYEKSLAFDEAGLCAAI------DQLKTDEVICPICKKNPLMQN---KQIIFCCCGMRIDTELDGLNIANIKSQLEEGISLHNTQCVKEAKFSVMKQAGVENLLMTCETCDFMFIVI 247          
BLAST of mRNA_H-paniculata_contig4222.10818.1 vs. uniprot
Match: A0A8B7ZW52_ACAPL (RPA-interacting protein B-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZW52_ACAPL)

HSP 1 Score: 76.6 bits (187), Expect = 2.860e-14
Identity = 49/135 (36.30%), Postives = 71/135 (52.59%), Query Frame = 0
Query:    5 IEEACRQEDLRAEAKVLHEYERTRRLEEDALEYAVASNLDDDGLSQDGVLCPICKRNYLLQAGPPSASIVCACGFRLDTRGDRLSLEYVRQQLAETYAEHSAGCSAEPTFSVEGTSNLEILWSACDGCGFARVVI 139
            I E  ++E +  E  ++ EYE +  L E +L   V      + L+ D +LCPICKRN L+        I CACG R++T  D ++L  VRQQL     +HSA C  +P F+V    + + L  +C  C F  +VI
Sbjct:  117 IMEELQRELIAEEGAIIAEYEASLHLAEASLSATV------EQLNTDELLCPICKRNPLMLN---KGVIFCACGMRINTEQDCITLANVRQQLESGVEQHSALCHGQPVFTVTDALSAQNLVLSCQTCDFLYIVI 242          
BLAST of mRNA_H-paniculata_contig4222.10818.1 vs. uniprot
Match: UPI000BA8254F (RPA-interacting protein B-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA8254F)

HSP 1 Score: 72.4 bits (176), Expect = 9.280e-13
Identity = 34/92 (36.96%), Postives = 50/92 (54.35%), Query Frame = 0
Query:   48 LSQDGVLCPICKRNYLLQAGPPSASIVCACGFRLDTRGDRLSLEYVRQQLAETYAEHSAGCSAEPTFSVEGTSNLEILWSACDGCGFARVVI 139
            L +D V+CP+C+R+ L QAG   + I C CG ++DT  D  +L    QQL +   +H+  C+  P FSV     +  L   C  CGF  +V+
Sbjct:  141 LQRDEVICPVCQRSPLAQAG---SVIFCPCGIQIDTEQDSFTLHNFHQQLDKGITQHTNNCNVSPIFSVRSEYGITNLLITCTACGFMFIVV 229          
BLAST of mRNA_H-paniculata_contig4222.10818.1 vs. uniprot
Match: UPI0014257338 (RPA-interacting protein B-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014257338)

HSP 1 Score: 72.4 bits (176), Expect = 1.090e-12
Identity = 54/141 (38.30%), Postives = 75/141 (53.19%), Query Frame = 0
Query:    5 IEEACRQEDLRAEAKVLHEYERTRRLEEDALEYAVASNLDDDGLSQDGVLCPICKRNYLLQAGPPSASIVCACGFRLDTRGDRLSLEYVRQQLAETYAEHSAG-CSAEPTFSVE-----GTSNLEILWSACDGCGFARVVI 139
            I E  + E ++ E  +L EYE   + EE+ L  +VA       ++ D V CPICKRN L++       I CACG R+ T  D L+L  V+QQL++   +HS+  C  +P FSV      G+ NL +   AC  C F  VVI
Sbjct:  112 IMEEIQHELMKEEQSLLSEYEAHLKHEEEVLCASVAK------MNTDEVTCPICKRNALMEN---KGVIFCACGVRIQTEQDCLTLNNVKQQLSDGVEQHSSTMCLGQPIFSVGSLDMVGSQNLLM---ACKVCDFLHVVI 240          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4222.10818.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF43_ECTSI8.670e-6470.00RPA_interact_C domain-containing protein n=1 Tax=E... [more]
A0A835YX80_9STRA1.840e-2244.34Replication protein A interacting C-terminal-domai... [more]
UPI0003F09FB16.300e-1633.83RPA-interacting protein A-like n=1 Tax=Saccoglossu... [more]
A0A7S2SC72_9STRA1.230e-1533.09Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI0018D6CED27.170e-1538.85RPA-interacting protein B-like n=1 Tax=Patiria min... [more]
A0A1S3K953_LINUN1.510e-1436.09RPA-interacting protein A isoform X2 n=1 Tax=Lingu... [more]
A0A1S3K944_LINUN2.210e-1436.09RPA-interacting protein B isoform X1 n=2 Tax=Lingu... [more]
A0A8B7ZW52_ACAPL2.860e-1436.30RPA-interacting protein B-like n=1 Tax=Acanthaster... [more]
UPI000BA8254F9.280e-1336.96RPA-interacting protein B-like n=1 Tax=Limulus pol... [more]
UPI00142573381.090e-1238.30RPA-interacting protein B-like n=1 Tax=Anneissia j... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028159RPA-interacting protein, C-terminal domainPFAMPF14768RPA_interact_Ccoord: 54..136
e-value: 9.0E-23
score: 80.6
IPR028156RPA-interacting proteinPANTHERPTHR31742FAMILY NOT NAMEDcoord: 4..139
NoneNo IPR availablePRODOMPD472859coord: 7..139
e-value: 7.0E-10
score: 148.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4222contigH-paniculata_contig4222:4595..9215 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4222.10818.1mRNA_H-paniculata_contig4222.10818.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4222 4370..9285 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4222.10818.1 ID=prot_H-paniculata_contig4222.10818.1|Name=mRNA_H-paniculata_contig4222.10818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MMRYIEEACRQEDLRAEAKVLHEYERTRRLEEDALEYAVASNLDDDGLSQ
DGVLCPICKRNYLLQAGPPSASIVCACGFRLDTRGDRLSLEYVRQQLAET
YAEHSAGCSAEPTFSVEGTSNLEILWSACDGCGFARVVI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028159RPA_interact_C_dom
IPR028156RIP