mRNA_H-paniculata_contig4220.10813.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig4220.10813.1 vs. uniprot
Match: A0A6H5KXC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC9_9PHAE) HSP 1 Score: 194 bits (493), Expect = 1.200e-48 Identity = 266/827 (32.16%), Postives = 341/827 (41.23%), Query Frame = 2
Query: 38 MKSRAPLQ-RLSVEERVNHAVQAAVRRALDKQRRAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEKRCQVVDDVSRLLGDELTGGDVSRITMGLEVLERE-------QQEQKGGEEWDGPYGRAWLLEVRRGWLNPRLSVVCILK-------------EEVGGGMSVGARGGRDRQG------------VVGGKEESGASGKESYLEENE-VGNARTSVGEE--GSFR-ARKGV--VAGAADERARVENSRMRSQDDEDILLSGV-----------------------------------------------DRPVCEIEDATRMGRSETAAPEDLDKFEPCDRTTPSNGLNRARTATAEISERTATASQDDSRNESQNRCDDEGLGKRSAVEDRQLPAA------------------------RAADGNVE---QLAAAVEGANSR--------------RMKSRVAEASLADLRGSLADVLVLSFRCGEEHAARQHHQGSWNSASPLPSLLANDGGLERLGAGDARSLMAAAAGVEDMED--------DNKQQDGVPDDRVCKAGTWWCGGGCESCETRAKAVHELLSRLQSTSVAQHRDIARMESSLVDLRDAIPTCTTXXXXXXXXXXXDFAPDSGTLRRSQGEKEDRESQRQRLLSSRSDLS-------AXXXXXXGHRGPMAVNGSLRRGDGGRAGTCSDGVGGRRDVRTEW---------------------------QEFEGLDAGPAHYHIGGSGGLGSPMVQGVLDRWIDVSKRRILEGWLAHVLHGGPVDAANGCFVPRVQISSLSKEVRD 2011
M++R P+ RLSVEERV HAV +AVRRAL +QR+ QE XXXXXXXXXX +R ++++++ LLG EL+ GDVSR+ MGLE +ERE ++E GG+E GRAW+LE R L +++V L+ EE G VG GG+D +G V GA G + +E V AR S E S R AR+ V + A E R E + + + L+GV RP C E A + R+E A EP +G A ATAE ERT A+ R DE + A E R A A+DG LAAA G +++ +M +R +EASL+DLR +L VL LSF CGEE A R+ G + L A + G GD S++ AG+E +ED E +A AV LL RL++ +V Q DIAR+E+SL LR + T T + + R G ES + D+S A RG G + +G+ GR G S +RD+RT+W QE +GLD HY G GGLGS VQGVLDRWIDVSKR ILEGWL HVLHGGPVD+ANG FVPRVQ+SSLSKEVRD
Sbjct: 1 MEARPPVPLRLSVEERVEHAVSSAVRRALAEQRKTQEQELDSLSNVLQRSLAALAGERXXXXXXXXXXXXRRRNMIEELTSLLGGELSCGDVSRLAMGLERIEREAGPAAASEEEGDGGQE----RGRAWVLEQVRQCLFAKVAVQDQLRSSADEIAADMFEAEEGLMGFQVGPGGGQDAEGASPISRPPPPTDVAVAAVGPGADGGALWSARSESVARARASASEALATSLRLARRRVEQLEALALEVRRGERKKRAAV----VALAGVGEGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSDGSLSRPSCSQEGA--VDRAEEAGRPAAGSVEPG-----GDGGTCAAEATAE-GERTGAAA---------TRPADEAAADKQAQEPRGGATAGRTASXXXXXXXXXXXPLHPVKTDHASDGGKGASVSLAAAPGGGDAQPPPVSPESCEVERWKMAARRSEASLSDLRKNLGSVLALSFMCGEESARRR---GEGKEEAGGVRLAAGGEVDKEAGCGDPDSVLGVVAGLERVEDAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXFSPGEAKAAAVDVLLKRLEALTVDQGGDIARLEASLQALRGSSATPTAGAAG--------VSSSGNSGRGDLGGNAHEESAQAAAGLKADDVSDPKLHSPAAAAAAVAPRGEREQEGGVSKGEAGRRGRGSRDASPKRDIRTDWEIEYINRWHAWPPYSSAIGSKVIGVVQQELDGLDTHLGHYQ--GGGGLGSQAVQGVLDRWIDVSKRNILEGWLGHVLHGGPVDSANGSFVPRVQLSSLSKEVRD 789
BLAST of mRNA_H-paniculata_contig4220.10813.1 vs. uniprot
Match: D8LD17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD17_ECTSI) HSP 1 Score: 150 bits (378), Expect = 3.890e-34 Identity = 201/652 (30.83%), Postives = 268/652 (41.10%), Query Frame = 2
Query: 38 MKSRAPLQ-RLSVEERVNHAVQAAVRRALDKQRRAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEKRCQVVDDVSRLLGDELTGGDVSRITMGLEVLEREQQEQKGGEEWDGPY---GRAWLLE-----------VRRGWLNPRLSVVCILKEEVGGGMSVGARGGRDRQGVVGGKEESGASGKESYLEENEVGNARTSVGEEGSFRARKGVVAGAADERARVENSRMRSQDDEDILLSGVDRPVCEIEDATRMGRSETAAPEDLDKFEPCDRTT-PSNGLNRARTATAEISERTATASQDDSRNESQNRCDD-----EGLGKRSAVE----DRQLPAARAADGNVEQLAAAVEGANSRRMKSRVAEASLADLRGSLADVLVLSFRCGEEHAARQHHQGSWNSASPLPSLLANDGGLER-LGAGDARSLMAAAAGVEDMED-------DNKQQDGVPDDRVCKAGTWWCGGGCESCETRAKAVHELLSRLQSTSVAQHRDIARMESSLVDLR--DAIPTCTTXXXXXXXXXXXDFAPDSGTLRRSQGEKEDRESQRQRLLSSRSDLSAXXXXXXGHRGPMAVNGSLRRGDGGRAGTCSDGVGGRRDVRTEWQEFEGLDAGPAHYHIGGSGGLGSPMVQGVLDRWIDV 1888
M++R P+ RLSVEERV HAV +AVRRAL +QR+ QE XXXXXXXXX +R ++++++ LLG EL+ GDVSR+ MGLE +ERE GRAW+LE VRRG R + V + GGG G G+ G VG A S +GS+ G A G + AA D+ + P G RTA++ + DD + D EG R D Q PAA + G VE+ R+ +R +EASLADLR +L VL LSF CGEE A R+ G A + L +GG+++ G GD S++ A +E + D + ++ V GT E +A AV LL RL++ SV Q DIAR+E+SL LR A PT T D G R + + + + + + A RG G + +G+ G+ G S +RD+RTEW+E +GLD HY G GGLGS VQGVLDRWIDV
Sbjct: 1 MEARPPVPLRLSVEERVEHAVSSAVRRALAEQRKTQEEELDSLSDVLQRSLAALAGERDXXXXXXXXXXXRRRDMIEELTSLLGGELSCGDVSRLAMGLERIEREAGPAAAXXXXXXXXQERGRAWVLERVEQLEALALEVRRGEGKKRAAAVALAGVGEGGGAGEAVESGEPADGLDDGXXXXXXXXXXXDRAVEGVGGAGASASSDGSWSFPSCSQEGTAXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXRGGTGAAATRPADEAAADKQAQEPRGGATAGRTASS-------GGADDDGCPLLPVKADHASDGGEGTSGRLVAAPGGGDAQPPAASSEPGEVERW----------RVAARRSEASLADLRETLGSVLALSFMCGEESARRR---GKEEEAGGV--RLPTEGGVDKEAGCGDPDSVLGVVAALERVGDAAAAAAESSVSEEAVEGTGGTSVGTSRGRERFSPGEAKASAVDVLLKRLEALSVDQGGDIARLETSLQALRGSSATPTAATAGAAGVSSLGDSGRVDLGGSAREESAQAAAGLKAEDVSDPKLHSPAAAAAAVAPRGEGDHEGGVSKGEAGQGGRGSRDASPKRDIRTEWEELDGLDTHLGHYQ--GGGGLGSQAVQGVLDRWIDV 624 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4220.10813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4220.10813.1 >prot_H-paniculata_contig4220.10813.1 ID=prot_H-paniculata_contig4220.10813.1|Name=mRNA_H-paniculata_contig4220.10813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=661bp MEPMKSRAPLQRLSVEERVNHAVQAAVRRALDKQRRAQERELDTLSDALQback to top mRNA from alignment at H-paniculata_contig4220:254..6964- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4220.10813.1 ID=mRNA_H-paniculata_contig4220.10813.1|Name=mRNA_H-paniculata_contig4220.10813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6711bp|location=Sequence derived from alignment at H-paniculata_contig4220:254..6964- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4220:254..6964- >mRNA_H-paniculata_contig4220.10813.1 ID=mRNA_H-paniculata_contig4220.10813.1|Name=mRNA_H-paniculata_contig4220.10813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3966bp|location=Sequence derived from alignment at H-paniculata_contig4220:254..6964- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |