mRNA_H-paniculata_contig42175.10806.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42175.10806.1
Unique NamemRNA_H-paniculata_contig42175.10806.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig42175.10806.1 vs. uniprot
Match: D7FN57_ECTSI (Glutamate--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN57_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 2.940e-33
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:   13 QVVTRFPPEPSGYLHIGHVKACLLNQYYATYYGGKMIVRFDDTNPSKEKEEYATSIVKDLATLGV 207
            QVVTRFPPEPSGYLHIGHVKACLLNQYYA +YGGKMIVRFDDTNPSKEKEEYA SIV+DLATLG+
Sbjct:  347 QVVTRFPPEPSGYLHIGHVKACLLNQYYAQHYGGKMIVRFDDTNPSKEKEEYAASIVQDLATLGI 411
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BLAST of mRNA_H-paniculata_contig42175.10806.1 vs. uniprot
Match: A0A7R9ZTU8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A7R9ZTU8_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.150e-30
Identity = 51/65 (78.46%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:   13 QVVTRFPPEPSGYLHIGHVKACLLNQYYATYYGGKMIVRFDDTNPSKEKEEYATSIVKDLATLGV 207
            QVVTRFPPEPSGYLH+GH KACLLN YYA  Y G++I+RFDDTNPSKEKEEY  SI++DL TLGV
Sbjct:   37 QVVTRFPPEPSGYLHVGHAKACLLNDYYARRYKGRLIIRFDDTNPSKEKEEYQESILQDLTTLGV 101
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BLAST of mRNA_H-paniculata_contig42175.10806.1 vs. uniprot
Match: A0A7S4AI61_9STRA (Glutamate--tRNA ligase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AI61_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.150e-28
Identity = 54/66 (81.82%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:   13 QVVTRFPPEPSGYLHIGHVKACLLNQYYATYYGGKMIVRFDDTNPSKEKEEYATSIVKDLATLGVS 210
            QVVTRFPPEPSGYLH+GH KACLLN YYA  Y G+MIVRFDDTNPSKEKEEY  SIV+DL TLGV+
Sbjct:  370 QVVTRFPPEPSGYLHVGHAKACLLNDYYARRYKGRMIVRFDDTNPSKEKEEYQQSIVEDLKTLGVN 435
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BLAST of mRNA_H-paniculata_contig42175.10806.1 vs. uniprot
Match: A0A1E7EUW5_9STRA (Glutamate--tRNA ligase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUW5_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.870e-28
Identity = 52/65 (80.00%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:   13 QVVTRFPPEPSGYLHIGHVKACLLNQYYATYYGGKMIVRFDDTNPSKEKEEYATSIVKDLATLGV 207
            QVVTRFPPEPSGYLH+GH KACLLN YYA  Y G++I+RFDDTNPSKEKEEY  SI++DLATLGV
Sbjct:   11 QVVTRFPPEPSGYLHVGHAKACLLNDYYAKRYQGRLIIRFDDTNPSKEKEEYQQSILEDLATLGV 75
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BLAST of mRNA_H-paniculata_contig42175.10806.1 vs. uniprot
Match: A0A448ZPH2_9STRA (Glutamate--tRNA ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPH2_9STRA)

HSP 1 Score: 114 bits (286), Expect = 5.450e-28
Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:   13 QVVTRFPPEPSGYLHIGHVKACLLNQYYATYYGGKMIVRFDDTNPSKEKEEYATSIVKDLATLGV 207
            +VVTRFPPEPSGYLH+GH KACLLN YYA  Y G+MIVRFDDTNPSKEKEEY  SIV+DL TLGV
Sbjct:  376 RVVTRFPPEPSGYLHVGHAKACLLNDYYARRYKGRMIVRFDDTNPSKEKEEYQQSIVEDLKTLGV 440
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BLAST of mRNA_H-paniculata_contig42175.10806.1 vs. uniprot
Match: A0A7R9ZU84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A7R9ZU84_9STRA)

HSP 1 Score: 114 bits (284), Expect = 7.340e-28
Identity = 51/65 (78.46%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:   13 QVVTRFPPEPSGYLHIGHVKACLLNQYYATYYGGKMIVRFDDTNPSKEKEEYATSIVKDLATLGV 207
            QVVTRFPPEPSGYLH+GH KACLLN YYA  Y G++I+RFDDTNPSKEKEEY  SI++DL TLGV
Sbjct:  379 QVVTRFPPEPSGYLHVGHAKACLLNDYYARRYKGRLIIRFDDTNPSKEKEEYQESILQDLTTLGV 443
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BLAST of mRNA_H-paniculata_contig42175.10806.1 vs. uniprot
Match: A0A7S2GKB1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2GKB1_9DINO)

HSP 1 Score: 105 bits (262), Expect = 1.020e-27
Identity = 49/67 (73.13%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:   13 QVVTRFPPEPSGYLHIGHVKACLLNQYYATYYGGKMIVRFDDTNPSKEKEEYATSIVKDLATLGVSY 213
            +VVTRFPPEPSGYLHIGH KA LLN  YA  YGGKM++RFDDTNPSKEK EY  SIV+DL  LG+ +
Sbjct:    1 KVVTRFPPEPSGYLHIGHAKAALLNYTYAQLYGGKMLLRFDDTNPSKEKMEYQESIVEDLKLLGIHH 67
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BLAST of mRNA_H-paniculata_contig42175.10806.1 vs. uniprot
Match: A0A7S4HXR2_9EUKA (Glutamate--tRNA ligase n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HXR2_9EUKA)

HSP 1 Score: 113 bits (283), Expect = 1.370e-27
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    4 ENDQVVTRFPPEPSGYLHIGHVKACLLNQYYATYYGGKMIVRFDDTNPSKEKEEYATSIVKDLATLGV 207
            E D VVTRFPPEPSGYLHIGH KA LLNQYYA  Y GK+++RFDDTNP+KEKEEY  +I++DL TLG+
Sbjct:  219 EGDTVVTRFPPEPSGYLHIGHAKAALLNQYYAKQYNGKLLIRFDDTNPTKEKEEYMDNILRDLKTLGI 286
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BLAST of mRNA_H-paniculata_contig42175.10806.1 vs. uniprot
Match: A0A7S1Z142_9STRA (Glutamate--tRNA ligase n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z142_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.390e-27
Identity = 51/65 (78.46%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:   13 QVVTRFPPEPSGYLHIGHVKACLLNQYYATYYGGKMIVRFDDTNPSKEKEEYATSIVKDLATLGV 207
            QVVTRFPPEPSGYLH+GH KACLLN YYA  Y G++I+RFDDTNPSKEKEEY  SI++DLA LGV
Sbjct:  397 QVVTRFPPEPSGYLHVGHAKACLLNDYYARRYRGRLILRFDDTNPSKEKEEYQASIIEDLAKLGV 461
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BLAST of mRNA_H-paniculata_contig42175.10806.1 vs. uniprot
Match: A0A077R9B7_9BASI (Glutamate--tRNA ligase (Fragment) n=1 Tax=Melanopsichium pennsylvanicum 4 TaxID=1398559 RepID=A0A077R9B7_9BASI)

HSP 1 Score: 113 bits (282), Expect = 1.850e-27
Identity = 49/68 (72.06%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    4 ENDQVVTRFPPEPSGYLHIGHVKACLLNQYYATYYGGKMIVRFDDTNPSKEKEEYATSIVKDLATLGV 207
            ++ QVVTRFPPEPSGYLH+GH KA +LNQY+AT Y GK+I+RFDDTNPSKEKEE+  SI++DLA LG+
Sbjct:  199 KHGQVVTRFPPEPSGYLHVGHAKAAILNQYFATQYNGKLIIRFDDTNPSKEKEEFEQSIIQDLALLGI 266
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42175.10806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN57_ECTSI2.940e-3392.31Glutamate--tRNA ligase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A7R9ZTU8_9STRA6.150e-3078.46Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A7S4AI61_9STRA1.150e-2881.82Glutamate--tRNA ligase n=1 Tax=Pseudo-nitzschia au... [more]
A0A1E7EUW5_9STRA1.870e-2880.00Glutamate--tRNA ligase n=1 Tax=Fragilariopsis cyli... [more]
A0A448ZPH2_9STRA5.450e-2881.54Glutamate--tRNA ligase n=1 Tax=Pseudo-nitzschia mu... [more]
A0A7R9ZU84_9STRA7.340e-2878.46Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A7S2GKB1_9DINO1.020e-2773.13Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S4HXR2_9EUKA1.370e-2773.53Glutamate--tRNA ligase n=1 Tax=Vannella sp. CB-201... [more]
A0A7S1Z142_9STRA1.390e-2778.46Glutamate--tRNA ligase n=5 Tax=Ditylum brightwelli... [more]
A0A077R9B7_9BASI1.850e-2772.06Glutamate--tRNA ligase (Fragment) n=1 Tax=Melanops... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42175contigH-paniculata_contig42175:1232..1459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue9.2e-28
Seed eggNOG ortholog2880.D7FN57
Preferred nameEPRS
KEGG rclassRC00055,RC00523
KEGG koko:K01885,ko:K14163
KEGG ReactionR03661,R05578
KEGG Pathwayko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120
KEGG ModuleM00121,M00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004812,GO:0004818,GO:0004827,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006417,GO:0006418,GO:0006424,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010876,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0016020,GO:0016043,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0017148,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0022607,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034641,GO:0034645,GO:0034660,GO:0035613,GO:0035770,GO:0036464,GO:0042221,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043434,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044539,GO:0045087,GO:0046483,GO:0046872,GO:0046914,GO:0046942,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071345,GO:0071346,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097452,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1990904,GO:2000112,GO:2000113
EggNOG free text desc.glutamyl-tRNA aminoacylation
EggNOG OGsCOG0008@1,KOG1147@2759
EC6.1.1.15,6.1.1.17
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930283.6531308-CDS-H-paniculata_contig42175:1231..14591622930283.6531308-CDS-H-paniculata_contig42175:1231..1459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42175 1232..1459 +
1691481224.6450794-CDS-H-paniculata_contig42175:1231..14591691481224.6450794-CDS-H-paniculata_contig42175:1231..1459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42175 1232..1459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42175.10806.1prot_H-paniculata_contig42175.10806.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42175 1232..1459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42175.10806.1

>prot_H-paniculata_contig42175.10806.1 ID=prot_H-paniculata_contig42175.10806.1|Name=mRNA_H-paniculata_contig42175.10806.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
LENDQVVTRFPPEPSGYLHIGHVKACLLNQYYATYYGGKMIVRFDDTNPS
KEKEEYATSIVKDLATLGVSYRTAF*
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mRNA from alignment at H-paniculata_contig42175:1232..1459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42175.10806.1 ID=mRNA_H-paniculata_contig42175.10806.1|Name=mRNA_H-paniculata_contig42175.10806.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at H-paniculata_contig42175:1232..1459+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGAAAATGACCAGGTGGTGACGCGGTTCCCGCCAGAGCCATCGGGCTA
CCTCCACATTGGCCACGTGAAAGCGTGCCTGCTGAACCAATACTACGCCA
CGTACTACGGCGGCAAGATGATTGTGCGCTTCGACGACACCAATCCTTCC
AAAGAGAAAGAAGAGTATGCCACCAGCATCGTCAAGGATCTCGCAACCCT
CGGGGTGAGTTACCGCACAGCCTTTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig42175:1232..1459+

>mRNA_H-paniculata_contig42175.10806.1 ID=mRNA_H-paniculata_contig42175.10806.1|Name=mRNA_H-paniculata_contig42175.10806.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig42175:1232..1459+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGAAAATGACCAGGTGGTGACGCGGTTCCCGCCAGAGCCATCGGGCTA
CCTCCACATTGGCCACGTGAAAGCGTGCCTGCTGAACCAATACTACGCCA
CGTACTACGGCGGCAAGATGATTGTGCGCTTCGACGACACCAATCCTTCC
AAAGAGAAAGAAGAGTATGCCACCAGCATCGTCAAGGATCTCGCAACCCT
CGGGGTGAGTTACCGCACAGCCTTTTGATTGGAAAATGACCAGGTGGTGA
CGCGGTTCCCGCCAGAGCCATCGGGCTACCTCCACATTGGCCACGTGAAA
GCGTGCCTGCTGAACCAATACTACGCCACGTACTACGGCGGCAAGATGAT
TGTGCGCTTCGACGACACCAATCCTTCCAAAGAGAAAGAAGAGTATGCCA
CCAGCATCGTCAAGGATCTCGCAACCCTCGGGGTGAGTTACCGCACAGCC
TTTTGA
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