prot_H-paniculata_contig4215.10801.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4215.10801.1
Unique Nameprot_H-paniculata_contig4215.10801.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length77
Homology
BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Match: D8LNY9_ECTSI (DNA repair helicase rad5,16, putative (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY9_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 6.040e-35
Identity = 61/75 (81.33%), Postives = 68/75 (90.67%), Query Frame = 0
Query:    1 MKRKRTGAKAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESALKSFATDATVTVMLVSLKAGGVGLNL 75
            M++K  GAKAVVFSQWTHMLDLAEAS+ARG W  RRLDG+M+QQ+RESALK FATD +VTVMLVSLKAGGVGLNL
Sbjct:    1 MRKKTPGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESVTVMLVSLKAGGVGLNL 75          
BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 9.510e-32
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 0
Query:    1 MKRKRTGAKAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESALKSFATDATVTVMLVSLKAGGVGLNLTA 77
            M++K  GAKAVVFSQWTHMLDLAEAS+ARG W  RRLDG+M+QQ+RESALK FATD +VTVMLVSLKAGGVGLNLTA
Sbjct: 1457 MRKKTPGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESVTVMLVSLKAGGVGLNLTA 1533          
BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Match: A0A6V1XFX6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XFX6_HETAK)

HSP 1 Score: 93.6 bits (231), Expect = 3.510e-22
Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 0
Query:    9 KAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESALKSFATDATVTVMLVSLKAGGVGLNLT 76
            KAVVFSQWT+MLDL E  L R  W+  RLDGSM+QQ+RE AL+ FAT+  + VML+SLKAGGVGLNLT
Sbjct:   42 KAVVFSQWTYMLDLVEVLLRRMGWRHTRLDGSMSQQQREDALERFATETDIPVMLLSLKAGGVGLNLT 109          
BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Match: A0A388LEU3_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LEU3_CHABU)

HSP 1 Score: 89.4 bits (220), Expect = 4.780e-19
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = 0
Query:    4 KRTGAKAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESALKSFATDATVTVMLVSLKAGGVGLNLTA 77
            ++TGAK++VFSQWT  LDL E  L R  +   RLDGS++Q  RE A++ F+T+  VTVML+SLKAGGVG+NLTA
Sbjct: 1237 RQTGAKSIVFSQWTAFLDLLEIPLKRKKFSFVRLDGSLSQHNREKAIRDFSTNPDVTVMLISLKAGGVGINLTA 1310          
BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Match: UPI0012630830 (DNA repair protein RAD5A isoform X1 n=3 Tax=Pistacia vera TaxID=55513 RepID=UPI0012630830)

HSP 1 Score: 87.0 bits (214), Expect = 3.080e-18
Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 0
Query:    4 KRTGAKAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESALKSFATDATVTVMLVSLKAGGVGLNLTA 77
            +++G+K+++FSQWT  LDL +  L+R +    RLDG++TQQRRE  LK F+ D  V V+L+SLKAGGVG+NLTA
Sbjct:  880 RKSGSKSIIFSQWTAFLDLLQIPLSRNNITFLRLDGTLTQQRREKVLKQFSEDTNVLVLLMSLKAGGVGINLTA 953          
BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Match: A0A7S3ZFV6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZFV6_9EUKA)

HSP 1 Score: 82.0 bits (201), Expect = 7.400e-18
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0
Query:    7 GAKAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESALKSFATDATVTVMLVSLKAGGVGLNL 75
            G K+VVFSQWTHMLDL E +L    +K  RLDGSM +++RE  L  F  DA   V+L+SLKAGGVGLNL
Sbjct:   30 GHKSVVFSQWTHMLDLIEPALTEKGFKYVRLDGSMNRKQREKVLDQFRGDAETEVILISLKAGGVGLNL 98          
BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Match: A0A0L0H763_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H763_SPIPD)

HSP 1 Score: 85.9 bits (211), Expect = 7.880e-18
Identity = 47/75 (62.67%), Postives = 55/75 (73.33%), Query Frame = 0
Query:    2 KRKRTGAKAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESALKSFATDATVTVMLVSLKAGGVGLNLT 76
            +R     KAVVFSQWT+MLDL E SL    +   RLDG M++Q R  A++SF TD +VTVMLVSLKAGGVGLNLT
Sbjct: 1098 QRGEAPIKAVVFSQWTNMLDLLEPSLRTYGFGFVRLDGKMSRQDRTDAMESFKTDPSVTVMLVSLKAGGVGLNLT 1172          
BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Match: A0A0A9DBF6_ARUDO (CHR903 n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9DBF6_ARUDO)

HSP 1 Score: 81.6 bits (200), Expect = 1.540e-17
Identity = 38/74 (51.35%), Postives = 55/74 (74.32%), Query Frame = 0
Query:    4 KRTGAKAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESALKSFATDATVTVMLVSLKAGGVGLNLTA 77
            + +GAK++VFSQWT  LDL +  L+R +    RLDG++  Q+RE  +K F+ D ++ V+L+SLKAGGVG+NLTA
Sbjct:   40 RSSGAKSIVFSQWTAFLDLLQIPLSRNNISFTRLDGTLNHQQREKVIKEFSEDKSILVLLMSLKAGGVGINLTA 113          
BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Match: UPI00192EDC85 (DNA repair protein RAD5A-like n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI00192EDC85)

HSP 1 Score: 79.3 bits (194), Expect = 1.810e-17
Identity = 39/74 (52.70%), Postives = 55/74 (74.32%), Query Frame = 0
Query:    4 KRTGAKAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESALKSFATDATVTVMLVSLKAGGVGLNLTA 77
            K +G+K++VFSQWT  LDL +  L+R      RLDGS++QQ+RE+ +K F+ D  + V+L+SLKAGGVG+NL A
Sbjct:    4 KSSGSKSIVFSQWTAFLDLLQIPLSRNKIPFVRLDGSLSQQQRENVIKRFSEDNDILVLLMSLKAGGVGVNLIA 77          
BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Match: A0A0K9RQK1_SPIOL (Uncharacterized protein n=3 Tax=Chenopodioideae TaxID=1307796 RepID=A0A0K9RQK1_SPIOL)

HSP 1 Score: 84.0 bits (206), Expect = 3.720e-17
Identity = 41/74 (55.41%), Postives = 56/74 (75.68%), Query Frame = 0
Query:    4 KRTGAKAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESALKSFATDATVTVMLVSLKAGGVGLNLTA 77
            + +G+K++VFSQWT  LDL E  L R +    RLDG+++QQ+RE  LK F+ D+ V V+L+SLKAGGVG+NLTA
Sbjct:  877 RASGSKSIVFSQWTAFLDLLEIPLTRNNISFLRLDGTLSQQQRERVLKKFSEDSDVMVLLMSLKAGGVGINLTA 950          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNY9_ECTSI6.040e-3581.33DNA repair helicase rad5,16, putative (Partial) (F... [more]
A0A6H5KHD4_9PHAE9.510e-3281.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1XFX6_HETAK3.510e-2269.12Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A388LEU3_CHABU4.780e-1959.46Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
UPI00126308303.080e-1855.41DNA repair protein RAD5A isoform X1 n=3 Tax=Pistac... [more]
A0A7S3ZFV6_9EUKA7.400e-1860.87Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A0L0H763_SPIPD7.880e-1862.67Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A0A9DBF6_ARUDO1.540e-1751.35CHR903 n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0... [more]
UPI00192EDC851.810e-1752.70DNA repair protein RAD5A-like n=1 Tax=Eucalyptus g... [more]
A0A0K9RQK1_SPIOL3.720e-1755.41Uncharacterized protein n=3 Tax=Chenopodioideae Ta... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 1..77
e-value: 1.6E-23
score: 85.2
NoneNo IPR availablePANTHERPTHR45626:SF22DNA REPAIR PROTEIN RAD5coord: 5..77
NoneNo IPR availablePANTHERPTHR45626FAMILY NOT NAMEDcoord: 5..77
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 3..76
e-value: 3.6E-9
score: 37.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 5..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4215contigH-paniculata_contig4215:7391..9007 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4215.10801.1mRNA_H-paniculata_contig4215.10801.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4215 7391..9007 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4215.10801.1 ID=prot_H-paniculata_contig4215.10801.1|Name=mRNA_H-paniculata_contig4215.10801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MKRKRTGAKAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESAL
KSFATDATVTVMLVSLKAGGVGLNLTA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase