mRNA_H-paniculata_contig4215.10801.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4215.10801.1
Unique NamemRNA_H-paniculata_contig4215.10801.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Match: D8LNY9_ECTSI (DNA repair helicase rad5,16, putative (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY9_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 6.040e-35
Identity = 61/75 (81.33%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:    1 MKRKRTGAKAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESALKSFATDATVTVMLVSLKAGGVGLNL 225
            M++K  GAKAVVFSQWTHMLDLAEAS+ARG W  RRLDG+M+QQ+RESALK FATD +VTVMLVSLKAGGVGLNL
Sbjct:    1 MRKKTPGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESVTVMLVSLKAGGVGLNL 75
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BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 9.510e-32
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 1 
Query:    1 MKRKRTGAKAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESALKSFATDATVTVMLVSLKAGGVGLNLTA 231
            M++K  GAKAVVFSQWTHMLDLAEAS+ARG W  RRLDG+M+QQ+RESALK FATD +VTVMLVSLKAGGVGLNLTA
Sbjct: 1457 MRKKTPGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESVTVMLVSLKAGGVGLNLTA 1533
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BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Match: A0A6V1XFX6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XFX6_HETAK)

HSP 1 Score: 93.6 bits (231), Expect = 3.510e-22
Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:   25 KAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESALKSFATDATVTVMLVSLKAGGVGLNLT 228
            KAVVFSQWT+MLDL E  L R  W+  RLDGSM+QQ+RE AL+ FAT+  + VML+SLKAGGVGLNLT
Sbjct:   42 KAVVFSQWTYMLDLVEVLLRRMGWRHTRLDGSMSQQQREDALERFATETDIPVMLLSLKAGGVGLNLT 109
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BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Match: A0A388LEU3_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LEU3_CHABU)

HSP 1 Score: 89.4 bits (220), Expect = 4.780e-19
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:   10 KRTGAKAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESALKSFATDATVTVMLVSLKAGGVGLNLTA 231
            ++TGAK++VFSQWT  LDL E  L R  +   RLDGS++Q  RE A++ F+T+  VTVML+SLKAGGVG+NLTA
Sbjct: 1237 RQTGAKSIVFSQWTAFLDLLEIPLKRKKFSFVRLDGSLSQHNREKAIRDFSTNPDVTVMLISLKAGGVGINLTA 1310
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BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Match: UPI0012630830 (DNA repair protein RAD5A isoform X1 n=3 Tax=Pistacia vera TaxID=55513 RepID=UPI0012630830)

HSP 1 Score: 87.0 bits (214), Expect = 3.080e-18
Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:   10 KRTGAKAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESALKSFATDATVTVMLVSLKAGGVGLNLTA 231
            +++G+K+++FSQWT  LDL +  L+R +    RLDG++TQQRRE  LK F+ D  V V+L+SLKAGGVG+NLTA
Sbjct:  880 RKSGSKSIIFSQWTAFLDLLQIPLSRNNITFLRLDGTLTQQRREKVLKQFSEDTNVLVLLMSLKAGGVGINLTA 953
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BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Match: A0A7S3ZFV6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZFV6_9EUKA)

HSP 1 Score: 82.0 bits (201), Expect = 7.400e-18
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:   19 GAKAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESALKSFATDATVTVMLVSLKAGGVGLNL 225
            G K+VVFSQWTHMLDL E +L    +K  RLDGSM +++RE  L  F  DA   V+L+SLKAGGVGLNL
Sbjct:   30 GHKSVVFSQWTHMLDLIEPALTEKGFKYVRLDGSMNRKQREKVLDQFRGDAETEVILISLKAGGVGLNL 98
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BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Match: A0A0L0H763_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H763_SPIPD)

HSP 1 Score: 85.9 bits (211), Expect = 7.880e-18
Identity = 47/75 (62.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    4 KRKRTGAKAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESALKSFATDATVTVMLVSLKAGGVGLNLT 228
            +R     KAVVFSQWT+MLDL E SL    +   RLDG M++Q R  A++SF TD +VTVMLVSLKAGGVGLNLT
Sbjct: 1098 QRGEAPIKAVVFSQWTNMLDLLEPSLRTYGFGFVRLDGKMSRQDRTDAMESFKTDPSVTVMLVSLKAGGVGLNLT 1172
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BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Match: A0A0A9DBF6_ARUDO (CHR903 n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9DBF6_ARUDO)

HSP 1 Score: 81.6 bits (200), Expect = 1.540e-17
Identity = 38/74 (51.35%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:   10 KRTGAKAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESALKSFATDATVTVMLVSLKAGGVGLNLTA 231
            + +GAK++VFSQWT  LDL +  L+R +    RLDG++  Q+RE  +K F+ D ++ V+L+SLKAGGVG+NLTA
Sbjct:   40 RSSGAKSIVFSQWTAFLDLLQIPLSRNNISFTRLDGTLNHQQREKVIKEFSEDKSILVLLMSLKAGGVGINLTA 113
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BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Match: UPI00192EDC85 (DNA repair protein RAD5A-like n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI00192EDC85)

HSP 1 Score: 79.3 bits (194), Expect = 1.810e-17
Identity = 39/74 (52.70%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:   10 KRTGAKAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESALKSFATDATVTVMLVSLKAGGVGLNLTA 231
            K +G+K++VFSQWT  LDL +  L+R      RLDGS++QQ+RE+ +K F+ D  + V+L+SLKAGGVG+NL A
Sbjct:    4 KSSGSKSIVFSQWTAFLDLLQIPLSRNKIPFVRLDGSLSQQQRENVIKRFSEDNDILVLLMSLKAGGVGVNLIA 77
[Close]
BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Match: A0A0K9RQK1_SPIOL (Uncharacterized protein n=3 Tax=Chenopodioideae TaxID=1307796 RepID=A0A0K9RQK1_SPIOL)

HSP 1 Score: 84.0 bits (206), Expect = 3.720e-17
Identity = 41/74 (55.41%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:   10 KRTGAKAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESALKSFATDATVTVMLVSLKAGGVGLNLTA 231
            + +G+K++VFSQWT  LDL E  L R +    RLDG+++QQ+RE  LK F+ D+ V V+L+SLKAGGVG+NLTA
Sbjct:  877 RASGSKSIVFSQWTAFLDLLEIPLTRNNISFLRLDGTLSQQQRERVLKKFSEDSDVMVLLMSLKAGGVGINLTA 950
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4215.10801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNY9_ECTSI6.040e-3581.33DNA repair helicase rad5,16, putative (Partial) (F... [more]
A0A6H5KHD4_9PHAE9.510e-3281.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1XFX6_HETAK3.510e-2269.12Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A388LEU3_CHABU4.780e-1959.46Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
UPI00126308303.080e-1855.41DNA repair protein RAD5A isoform X1 n=3 Tax=Pistac... [more]
A0A7S3ZFV6_9EUKA7.400e-1860.87Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A0L0H763_SPIPD7.880e-1862.67Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A0A9DBF6_ARUDO1.540e-1751.35CHR903 n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0... [more]
UPI00192EDC851.810e-1752.70DNA repair protein RAD5A-like n=1 Tax=Eucalyptus g... [more]
A0A0K9RQK1_SPIOL3.720e-1755.41Uncharacterized protein n=3 Tax=Chenopodioideae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4215contigH-paniculata_contig4215:7391..9007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue6.7e-26
Seed eggNOG ortholog2880.D8LNY9
KEGG koko:K15505
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons3
Model size231
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4215.10801.1prot_H-paniculata_contig4215.10801.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4215 7391..9007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930282.5880768-CDS-H-paniculata_contig4215:7390..74351622930282.5880768-CDS-H-paniculata_contig4215:7390..7435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4215 7391..7435 +
1691481224.1937037-CDS-H-paniculata_contig4215:7390..74351691481224.1937037-CDS-H-paniculata_contig4215:7390..7435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4215 7391..7435 +
1622930282.6025648-CDS-H-paniculata_contig4215:8247..83551622930282.6025648-CDS-H-paniculata_contig4215:8247..8355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4215 8248..8355 +
1691481224.206165-CDS-H-paniculata_contig4215:8247..83551691481224.206165-CDS-H-paniculata_contig4215:8247..8355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4215 8248..8355 +
1622930282.625085-CDS-H-paniculata_contig4215:8929..90071622930282.625085-CDS-H-paniculata_contig4215:8929..9007Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4215 8930..9007 +
1691481224.217342-CDS-H-paniculata_contig4215:8929..90071691481224.217342-CDS-H-paniculata_contig4215:8929..9007Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4215 8930..9007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4215.10801.1

>prot_H-paniculata_contig4215.10801.1 ID=prot_H-paniculata_contig4215.10801.1|Name=mRNA_H-paniculata_contig4215.10801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MKRKRTGAKAVVFSQWTHMLDLAEASLARGDWKVRRLDGSMTQQRRESAL
KSFATDATVTVMLVSLKAGGVGLNLTA
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mRNA from alignment at H-paniculata_contig4215:7391..9007+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4215.10801.1 ID=mRNA_H-paniculata_contig4215.10801.1|Name=mRNA_H-paniculata_contig4215.10801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1617bp|location=Sequence derived from alignment at H-paniculata_contig4215:7391..9007+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAGAAAAAGAACGGGCGCGAAGGCCGTTGTGTTCTCTCAGGTGAA
TGTTAAATAGGTAGGTAGGTAGGTATATGTCGGCGCCAAAGAGGGGAATT
TCAAAAAAGGAAGAGTAGCCAGTGTGACGTCGGTGACGTTCCTTCCAACG
AGCGTTTGTTGACCATTCATATATATATATATTTTTTTTTTATCAGGCAA
GTTGAATGTTATGAGATGTTGATTGCGGGACGTGACAGTCATTGTCTAAT
GTGACGGTTCCATCCCCTTTCCCCGGGTTTACGTAAGGTAGCCTCAGTGT
GAGCTTGGAGCAATAAGCACGAACCGTGTGACCTTCCCACCAACTGACAG
ACTTGTATCGACCCAGGGCTTTTCCTGACGTACAGCAATATACAGCTAAT
ACAAGAGACCAGACCATTGCCAAGGACTACTTGTACCACCCCAGCCGCAC
CGCTCTGAGGGTATTGTACAGCATAGTCAGTAACAGGAAACAATAATCTA
CATGTGTGAGATACTCCACAATACGCACAGCAGTTATCATCACATGAACA
GTTAGAAAACTGCCAGCACCTGTTTCGCCACAATCTTAGTCTTTGTTTCT
CTCTTGCCGCCGTATTAGCGGCAGCAGGACGGTTACACCAGCGCCCCCCC
CGACTAGCCAACAGAGCACTCCGCCCTCACAGCCTCCGCCACAATCTCAC
CCGCTACCTTTTCCCTTCCTTCTCCTCCCGCCTCTCGTAACCTTGTTGCA
CAATGGTGCCCCATCGCCACACGTTTTGTGGTTGCTTTTGTTGTCTGTGG
TTCCTGTTTTCCCCTCTTTTGTTTTGTTTGCATACCGTCTTTACAAACAT
TGCTCAGTGGACGCACATGCTGGACCTTGCGGAGGCGAGTTTGGCCAGGG
GTGACTGGAAAGTTCGGCGGCTCGATGGGTCCATGACCCAGCAGCGGCGC
GAGTCTGCGCTCAAGGTATAGTACTGGAGCACGCGATACGTCAAACGAAG
CAGTGTAAATGCACACCCGTTTATTGTTGTAATACATACCACGTGACGGG
ATCACGCGGAGTTATTCTGCACGCCATGGCGTTGCTCTATCGACCAAAGC
TGCTGCTCCATCACGCTATTTAGTTGCAGCTTTTCCCGTAGAAGTTCTAT
TGTAGGCGATACACTTTGGTTCTTGCACCACTGTATACCCCACCTCCACA
TTTTTGCCGCCTCCTTACCTCGGCGAGGCGGGCGTAGAAAAGCTTGACGT
GGTTATGGTTGTTGGACGTAACCTTGTACCATCAAGTCGATGGGTACGTG
GAGGAATTTTTTCTTAATAACGTGTTTAGCTTTGCGCTGCGTTTTATTCG
GTAAGCGAGACATTGATATAATGTTATTCATTTGGAAGACACGGGCTACG
GGAATGCAGTGCTATTTTTTTTCAAGGCTAGAAATATTGTATATTACAAG
TATGTTTTTGCCTGTGTTACGGAGGCCGGAATCCATAAAATGTTTTGGTG
AATACATCATCTCGCGTTTGTTGCCGATCCCTGTTTCAGAGCTTCGCTAC
GGACGCTACGGTCACGGTGATGCTAGTGTCGCTCAAGGCCGGGGGTGTCG
GTCTTAATTTGACCGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig4215:7391..9007+

>mRNA_H-paniculata_contig4215.10801.1 ID=mRNA_H-paniculata_contig4215.10801.1|Name=mRNA_H-paniculata_contig4215.10801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig4215:7391..9007+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAGAAAAAGAACGGGCGCGAAGGCCGTTGTGTTCTCTCAGATGAA
AAGAAAAAGAACGGGCGCGAAGGCCGTTGTGTTCTCTCAGTGGACGCACA
TGCTGGACCTTGCGGAGGCGAGTTTGGCCAGGGGTGACTGGAAAGTTCGG
CGGCTCGATGGGTCCATGACCCAGCAGCGGCGCGAGTCTGCGCTCAAGTG
GACGCACATGCTGGACCTTGCGGAGGCGAGTTTGGCCAGGGGTGACTGGA
AAGTTCGGCGGCTCGATGGGTCCATGACCCAGCAGCGGCGCGAGTCTGCG
CTCAAGAGCTTCGCTACGGACGCTACGGTCACGGTGATGCTAGTGTCGCT
CAAGGCCGGGGGTGTCGGTCTTAATTTGACCGCCAGCTTCGCTACGGACG
CTACGGTCACGGTGATGCTAGTGTCGCTCAAGGCCGGGGGTGTCGGTCTT
AATTTGACCGCC
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