mRNA_H-paniculata_contig4213.10797.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4213.10797.1
Unique NamemRNA_H-paniculata_contig4213.10797.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4213.10797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4213contigH-paniculata_contig4213:1397..2265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size535
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930282.1522555-CDS-H-paniculata_contig4213:1396..17691622930282.1522555-CDS-H-paniculata_contig4213:1396..1769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4213 1397..1769 +
1691481223.9697607-CDS-H-paniculata_contig4213:1396..17691691481223.9697607-CDS-H-paniculata_contig4213:1396..1769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4213 1397..1769 +
1622930282.1703198-CDS-H-paniculata_contig4213:2104..22651622930282.1703198-CDS-H-paniculata_contig4213:2104..2265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4213 2105..2265 +
1691481223.9823978-CDS-H-paniculata_contig4213:2104..22651691481223.9823978-CDS-H-paniculata_contig4213:2104..2265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4213 2105..2265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4213.10797.1prot_H-paniculata_contig4213.10797.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4213 1397..2265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4213.10797.1

>prot_H-paniculata_contig4213.10797.1 ID=prot_H-paniculata_contig4213.10797.1|Name=mRNA_H-paniculata_contig4213.10797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=178bp
ENDPCNLVQKAIKRSIMPGGKGSISLMRTAAMHIYAWRSSMVSGRSPHLL
SMSTTLKSRAAAAVTRVAGALQAEGLLTKAVDLEPFHWPTMVALAFLVLQ
RGGVDTVSRAGALLERAVKLAGRDCSSDVLRALALIRASQDRQSVAVSLL
HRATVADTRTATDVTNRYRCSNRGEDPL
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mRNA from alignment at H-paniculata_contig4213:1397..2265+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4213.10797.1 ID=mRNA_H-paniculata_contig4213.10797.1|Name=mRNA_H-paniculata_contig4213.10797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=869bp|location=Sequence derived from alignment at H-paniculata_contig4213:1397..2265+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAATGACCCCTGCAACCTCGTTCAAAAAGCTATCAAACGATCGATCAT
GCCGGGAGGGAAAGGGAGCATTTCCTTGATGCGTACCGCGGCTATGCACA
TATACGCGTGGCGAAGCTCGATGGTGTCGGGTCGTAGTCCCCATTTATTA
TCCATGTCTACTACATTGAAATCGAGGGCAGCTGCAGCTGTAACGCGAGT
CGCGGGGGCACTCCAGGCAGAGGGGTTGCTCACGAAAGCGGTGGATCTCG
AGCCGTTTCACTGGCCAACAATGGTGGCCCTTGCGTTTTTGGTGCTGCAA
CGTGGGGGTGTAGACACGGTCTCGCGAGCAGGGGCATTGCTCGAGAGGGC
GGTGAAGTTGGCTGGGCGAGACTGTAAGTTTGGGAATCTGAATTCCAATG
CCTCGTCTCTTGTACATTCTCGTATTCGTTCATGAGTTGGACTAATGCGT
TTGCAAGCATTAGGTAGCGAATAAGTCATCACCCCAATTACACGTGTATC
CCTTCCTCGCGCGATATTTTCTGATTACAGCGTTAAATCGAACACATGTG
TGGACAATACCCTATGGAAATAGATCATTTCCATAAGTGTCCAGCGAGAA
GAAACCCTATTTTCATACGTGTGATTGATCCACCTAGCCTGATGTGAAGC
TCTTCATTCCATTCTCGCTCGCCTTTTCGTTTCCTGATATATCGGTCATT
TCCCACAGGTTCATCTGATGTCCTCCGAGCCCTTGCTCTCATTCGGGCCT
CACAGGATCGTCAATCGGTGGCGGTTTCTCTGCTCCATCGAGCTACCGTG
GCCGACACGCGCACTGCTACCGATGTCACCAACAGGTACCGATGTTCCAA
TCGCGGCGAGGATCCCCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4213:1397..2265+

>mRNA_H-paniculata_contig4213.10797.1 ID=mRNA_H-paniculata_contig4213.10797.1|Name=mRNA_H-paniculata_contig4213.10797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at H-paniculata_contig4213:1397..2265+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAATGACCCCTGCAACCTCGTTCAAAAAGCTATCAAACGATCGATCAT
GCCGGGAGGGAAAGGGAGCATTTCCTTGATGCGTACCGCGGCTATGCACA
TATACGCGTGGCGAAGCTCGATGGTGTCGGGTCGTAGTCCCCATTTATTA
TCCATGTCTACTACATTGAAATCGAGGGCAGCTGCAGCTGTAACGCGAGT
CGCGGGGGCACTCCAGGCAGAGGGGTTGCTCACGAAAGCGGTGGATCTCG
AGCCGTTTCACTGGCCAACAATGGTGGCCCTTGCGTTTTTGGTGCTGCAA
CGTGGGGGTGTAGACACGGTCTCGCGAGCAGGGGCATTGCTCGAGAGGGC
GGTGAAGTTGGCTGGGCGAGACTGAGAATGACCCCTGCAACCTCGTTCAA
AAAGCTATCAAACGATCGATCATGCCGGGAGGGAAAGGGAGCATTTCCTT
GATGCGTACCGCGGCTATGCACATATACGCGTGGCGAAGCTCGATGGTGT
CGGGTCGTAGTCCCCATTTATTATCCATGTCTACTACATTGAAATCGAGG
GCAGCTGCAGCTGTAACGCGAGTCGCGGGGGCACTCCAGGCAGAGGGGTT
GCTCACGAAAGCGGTGGATCTCGAGCCGTTTCACTGGCCAACAATGGTGG
CCCTTGCGTTTTTGGTGCTGCAACGTGGGGGTGTAGACACGGTCTCGCGA
GCAGGGGCATTGCTCGAGAGGGCGGTGAAGTTGGCTGGGCGAGACTGTTC
ATCTGATGTCCTCCGAGCCCTTGCTCTCATTCGGGCCTCACAGGATCGTC
AATCGGTGGCGGTTTCTCTGCTCCATCGAGCTACCGTGGCCGACACGCGC
ACTGCTACCGATGTCACCAACAGGTACCGATGTTCCAATCGCGGCGAGGA
TCCCCTGGTTCATCTGATGTCCTCCGAGCCCTTGCTCTCATTCGGGCCTC
ACAGGATCGTCAATCGGTGGCGGTTTCTCTGCTCCATCGAGCTACCGTGG
CCGACACGCGCACTGCTACCGATGTCACCAACAGGTACCGATGTTCCAAT
CGCGGCGAGGATCCCCTG
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