prot_H-paniculata_contig4210.10790.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4210.10790.1
Unique Nameprot_H-paniculata_contig4210.10790.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length138
Homology
BLAST of mRNA_H-paniculata_contig4210.10790.1 vs. uniprot
Match: A0A6H5L1V5_9PHAE (BTP domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V5_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 8.080e-47
Identity = 84/132 (63.64%), Postives = 105/132 (79.55%), Query Frame = 0
Query:    5 TDTASEGKVDSDEFARILTKQAAAHVCVALGFTATTAGAIECLTDVVQQYLEEIAKRTMENTYRAGRTEANVADVLQGFEQMPTPVKWTDLRDFAFSENGYTTGIASAKRSAAAAAALNSNEGPTASVRGGG 136
            T++  EG+VDS +FARILTKQA AHVCVA+GFTAT+AGA++CLTDVVQ+Y+E +AKRTMENTYRAGRTE N+ DVLQGF+QM TP+ WT+LRDFAFSE+GY+    +A  S + +AA  +N        GGG
Sbjct:   19 TNSKDEGEVDSAQFARILTKQAVAHVCVAIGFTATSAGALDCLTDVVQRYVETMAKRTMENTYRAGRTEPNIPDVLQGFQQMRTPLSWTELRDFAFSEDGYSNRYDNAASSGSGSAAPAANXXXXXRAAGGG 150          
BLAST of mRNA_H-paniculata_contig4210.10790.1 vs. uniprot
Match: A0A7S2WV84_9STRA (Transcription initiation factor TFIID subunit 8 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV84_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 8.000e-11
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 0
Query:   25 QAAAHVCVALGFTATTAGAIECLTDVVQQYLEEIAKRTMENTYRAGRTEANVADVLQGFEQM-PTPVKWTDLRDFAFSENG 104
            QAAAH+C+ALGF  T    ++ + DV++ Y+E I       T   GR +    D++   +Q+ P PV W +LR FAF+E G
Sbjct:   70 QAAAHICLALGFERTYPAVLDTIADVIKHYVETIGSHAHAITEHGGRQDVTAIDIIAAMKQLSPHPVNWQELRRFAFNEQG 150          
BLAST of mRNA_H-paniculata_contig4210.10790.1 vs. uniprot
Match: A0A8C4R002_EPTBU (BTP domain-containing protein n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4R002_EPTBU)

HSP 1 Score: 52.0 bits (123), Expect = 5.250e-5
Identity = 29/84 (34.52%), Postives = 49/84 (58.33%), Query Frame = 0
Query:   15 SDEFARILTKQAAAHVCVALGFTATTAGAIECLTDVVQQYLEEIAKRTMENTYRAGRTEANVADVLQGFEQMPTPVKWTDLRDF 98
            ++ ++R + + AAA +C +LG+ A    A++ LTDV+Q+Y+E++A+         GRT  +V D  Q F+ M   V   +L DF
Sbjct:    2 TESYSRAVLRVAAAQICQSLGWDAVQVSAVDILTDVLQRYIEQLARCCHRYGELYGRTNPDVEDAGQAFQLMG--VNLVELEDF 83          
BLAST of mRNA_H-paniculata_contig4210.10790.1 vs. uniprot
Match: A0A833R003_9POAL (Transcription initiation factor TFIID subunit 8 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R003_9POAL)

HSP 1 Score: 51.6 bits (122), Expect = 6.220e-5
Identity = 27/71 (38.03%), Postives = 42/71 (59.15%), Query Frame = 0
Query:   16 DEFARILTKQAAAHVCVALGFTATTAGAIECLTDVVQQYLEEIAKRTMENTYRAGRTEANVADVLQGFEQM 86
            DEF+R ++K A A +  A GF  +   AI+ L+D+  +Y+  + K T      AGRT AN+ D++QG E +
Sbjct:   37 DEFSRAISKAAVAQILQATGFDGSRKSAIDTLSDLTIRYILSLGKATSFYANLAGRTSANLFDLVQGLEDL 107          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4210.10790.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L1V5_9PHAE8.080e-4763.64BTP domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A7S2WV84_9STRA8.000e-1139.51Transcription initiation factor TFIID subunit 8 n=... [more]
A0A8C4R002_EPTBU5.250e-534.52BTP domain-containing protein n=1 Tax=Eptatretus b... [more]
A0A833R003_9POAL6.220e-538.03Transcription initiation factor TFIID subunit 8 n=... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006565Bromodomain associated domainSMARTSM0057617neu3coord: 16..92
e-value: 2.3E-13
score: 60.4
IPR006565Bromodomain associated domainPFAMPF07524Bromo_TPcoord: 16..86
e-value: 1.5E-15
score: 57.0
IPR009072Histone-foldGENE3D1.10.20.10coord: 12..104
e-value: 7.7E-18
score: 66.0
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 36..88
IPR037818Transcription initiation factor TFIID subunit 8PANTHERPTHR46338FAMILY NOT NAMEDcoord: 9..89

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4210contigH-paniculata_contig4210:6122..10048 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4210.10790.1mRNA_H-paniculata_contig4210.10790.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4210 6095..10048 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4210.10790.1 ID=prot_H-paniculata_contig4210.10790.1|Name=mRNA_H-paniculata_contig4210.10790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
MASPTDTASEGKVDSDEFARILTKQAAAHVCVALGFTATTAGAIECLTDV
VQQYLEEIAKRTMENTYRAGRTEANVADVLQGFEQMPTPVKWTDLRDFAF
SENGYTTGIASAKRSAAAAAALNSNEGPTASVRGGGSG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006565BTP
IPR009072Histone-fold
IPR037818TAF8