mRNA_H-paniculata_contig4210.10790.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4210.10790.1
Unique NamemRNA_H-paniculata_contig4210.10790.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4210.10790.1 vs. uniprot
Match: A0A6H5L1V5_9PHAE (BTP domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V5_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 2.860e-47
Identity = 84/132 (63.64%), Postives = 105/132 (79.55%), Query Frame = 1 
Query:   40 TDTASEGKVDSDEFARILTKQAAAHVCVALGFTATTAGAIECLTDVVQQYLEEIAKRTMENTYRAGRTEANVADVLQGFEQMPTPVKWTDLRDFAFSENGYTTGIASAKRSAAAAAALNSNEGPTASVRGGG 435
            T++  EG+VDS +FARILTKQA AHVCVA+GFTAT+AGA++CLTDVVQ+Y+E +AKRTMENTYRAGRTE N+ DVLQGF+QM TP+ WT+LRDFAFSE+GY+    +A  S + +AA  +N        GGG
Sbjct:   19 TNSKDEGEVDSAQFARILTKQAVAHVCVAIGFTATSAGALDCLTDVVQRYVETMAKRTMENTYRAGRTEPNIPDVLQGFQQMRTPLSWTELRDFAFSEDGYSNRYDNAASSGSGSAAPAANXXXXXRAAGGG 150
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BLAST of mRNA_H-paniculata_contig4210.10790.1 vs. uniprot
Match: A0A7S2WV84_9STRA (Transcription initiation factor TFIID subunit 8 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV84_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.850e-11
Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:   25 VMASPTDTASEGKVDS--DEFARILTKQAAAHVCVALGFTATTAGAIECLTDVVQQYLEEIAKRTMENTYRAGRTEANVADVLQGFEQM-PTPVKWTDLRDFAFSENG 339
            V  SP    S   +D+  + F+  +  QAAAH+C+ALGF  T    ++ + DV++ Y+E I       T   GR +    D++   +Q+ P PV W +LR FAF+E G
Sbjct:   43 VCVSPGPGPSRCAMDTSPEYFSHRVCVQAAAHICLALGFERTYPAVLDTIADVIKHYVETIGSHAHAITEHGGRQDVTAIDIIAAMKQLSPHPVNWQELRRFAFNEQG 150
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BLAST of mRNA_H-paniculata_contig4210.10790.1 vs. uniprot
Match: A0A833R003_9POAL (Transcription initiation factor TFIID subunit 8 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R003_9POAL)

HSP 1 Score: 52.4 bits (124), Expect = 4.250e-5
Identity = 29/87 (33.33%), Postives = 46/87 (52.87%), Query Frame = 1 
Query:   25 VMASPTDTASEGKVDSDEFARILTKQAAAHVCVALGFTATTAGAIECLTDVVQQYLEEIAKRTMENTYRAGRTEANVADVLQGFEQM 285
            + +S T          DEF+R ++K A A +  A GF  +   AI+ L+D+  +Y+  + K T      AGRT AN+ D++QG E +
Sbjct:   21 IQSSSTSCHLASTSGPDEFSRAISKAAVAQILQATGFDGSRKSAIDTLSDLTIRYILSLGKATSFYANLAGRTSANLFDLVQGLEDL 107
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BLAST of mRNA_H-paniculata_contig4210.10790.1 vs. uniprot
Match: A0A8C4R002_EPTBU (BTP domain-containing protein n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4R002_EPTBU)

HSP 1 Score: 52.4 bits (124), Expect = 4.960e-5
Identity = 29/84 (34.52%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:   70 SDEFARILTKQAAAHVCVALGFTATTAGAIECLTDVVQQYLEEIAKRTMENTYRAGRTEANVADVLQGFEQMPTPVKWTDLRDF 321
            ++ ++R + + AAA +C +LG+ A    A++ LTDV+Q+Y+E++A+         GRT  +V D  Q F+ M   V   +L DF
Sbjct:    2 TESYSRAVLRVAAAQICQSLGWDAVQVSAVDILTDVLQRYIEQLARCCHRYGELYGRTNPDVEDAGQAFQLMG--VNLVELEDF 83
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BLAST of mRNA_H-paniculata_contig4210.10790.1 vs. uniprot
Match: A0A8J4U0Z2_CLAMG (Transcription initiation factor TFIID subunit 3 (Fragment) n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4U0Z2_CLAMG)

HSP 1 Score: 49.7 bits (117), Expect = 9.850e-5
Identity = 28/83 (33.73%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:   73 DEFARILTKQAAAHVCVALGFTATTAGAIECLTDVVQQYLEEIAKRTMENTYRAGRTEANVADVLQGFEQMPTPVKWTDLRDF 321
            + +AR L + A A +C ALG+ A    A E L+DV+++YL+++A+     +   GRT+  ++D+ Q F  M   V   +L D+
Sbjct:    3 ESYARSLMRVAVAQLCQALGWDAVQLSACELLSDVLERYLQQLARGCHRYSELYGRTDPGLSDIEQAFGLMGVSV--AELEDY 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4210.10790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L1V5_9PHAE2.860e-4763.64BTP domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A7S2WV84_9STRA2.850e-1135.19Transcription initiation factor TFIID subunit 8 n=... [more]
A0A833R003_9POAL4.250e-533.33Transcription initiation factor TFIID subunit 8 n=... [more]
A0A8C4R002_EPTBU4.960e-534.52BTP domain-containing protein n=1 Tax=Eptatretus b... [more]
A0A8J4U0Z2_CLAMG9.850e-533.73Transcription initiation factor TFIID subunit 3 (F... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4210contigH-paniculata_contig4210:6095..10048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.0
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog3694.POPTR_0004s11520.1
KEGG koko:K14649
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Transcription initiation factor TFIID subunit
EggNOG OGs37K2F@33090,3G9QF@35493,4JMIM@91835,KOG2389@1,KOG2389@2759
COG Functional cat.K
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021
Exons4
Model size443
Cds size414
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4210.10790.1prot_H-paniculata_contig4210.10790.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4210 6122..10048 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930281.3561518-UTR-H-paniculata_contig4210:6094..61211622930281.3561518-UTR-H-paniculata_contig4210:6094..6121Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4210 6095..6121 +
1691481223.692932-UTR-H-paniculata_contig4210:6094..61211691481223.692932-UTR-H-paniculata_contig4210:6094..6121Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4210 6095..6121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930281.379273-CDS-H-paniculata_contig4210:6121..61961622930281.379273-CDS-H-paniculata_contig4210:6121..6196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4210 6122..6196 +
1691481223.7054622-CDS-H-paniculata_contig4210:6121..61961691481223.7054622-CDS-H-paniculata_contig4210:6121..6196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4210 6122..6196 +
1622930281.4006221-CDS-H-paniculata_contig4210:7862..79371622930281.4006221-CDS-H-paniculata_contig4210:7862..7937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4210 7863..7937 +
1691481223.715962-CDS-H-paniculata_contig4210:7862..79371691481223.715962-CDS-H-paniculata_contig4210:7862..7937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4210 7863..7937 +
1622930281.419545-CDS-H-paniculata_contig4210:8874..89821622930281.419545-CDS-H-paniculata_contig4210:8874..8982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4210 8875..8982 +
1691481223.7264128-CDS-H-paniculata_contig4210:8874..89821691481223.7264128-CDS-H-paniculata_contig4210:8874..8982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4210 8875..8982 +
1622930281.433019-CDS-H-paniculata_contig4210:9892..100481622930281.433019-CDS-H-paniculata_contig4210:9892..10048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4210 9893..10048 +
1691481223.7344298-CDS-H-paniculata_contig4210:9892..100481691481223.7344298-CDS-H-paniculata_contig4210:9892..10048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4210 9893..10048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4210.10790.1

>prot_H-paniculata_contig4210.10790.1 ID=prot_H-paniculata_contig4210.10790.1|Name=mRNA_H-paniculata_contig4210.10790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
MASPTDTASEGKVDSDEFARILTKQAAAHVCVALGFTATTAGAIECLTDV
VQQYLEEIAKRTMENTYRAGRTEANVADVLQGFEQMPTPVKWTDLRDFAF
SENGYTTGIASAKRSAAAAAALNSNEGPTASVRGGGSG
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mRNA from alignment at H-paniculata_contig4210:6095..10048+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4210.10790.1 ID=mRNA_H-paniculata_contig4210.10790.1|Name=mRNA_H-paniculata_contig4210.10790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3954bp|location=Sequence derived from alignment at H-paniculata_contig4210:6095..10048+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTGTGTGGTGTGTGCCCCCGCCGGTCATGGCATCTCCTACAGATACGGC
ATCGGAGGGAAAGGTCGACAGTGACGAATTCGCGCGTATTTTGACGAAAC
AGGTGATAATGTGGTGGTGTTGCGCCGGGCTGTTGCATTGATGTGTTGAC
GGTGGTGTAGTTTTACGTACTCTTGCCGTCTCCATTCGACCCTTTGAGAA
AATTGGCCTTACTGTACTCTACTGTACTGTAGTACTGTCTGTGAGGCGAG
TTTCGAGTGGGGCCCGCTCTCACCCAGGCGTGGTGATGTGTCTTATGTGA
GCTGCGGCTTTGATTTCACACCTCGTTGGTTGGTATCATTCCACGACTAC
TCCCCGCCAACACGCGGCTGTTGCTATGGGGTCGAGTTTCGCGTCTATGC
TAAAAGACAGGTGCTGTTTGCGTTTGCCTTCGCCTATCATTGATCCGGCT
TGGTGGGTGAGGTGTCTCTGGTCTTCGAAATGTGATTGCATCAGACAGAT
CACCCACGAATTAAATAGCGTCAAACTTTGGGGTGCTTCTATTTGTCAGA
TGGGCTAGCTGTAAAATAGCTTGGTCAGACTCCCAAACCCGTCCTACTGT
GCTGCATACCGGTCCTTCTGGGCTCCAGGGAATCATGCCAGAGAGACTTT
CGTGTACTATAATCGACGACTGAATTTTTTGTCTGTACTCCTGTTTCTAC
GCAGATCAAAAGCAGTATAATATGAATTGTGAAACAATACTTGCCGTCGG
CTCTCCTCTCTCCTGCTGTGGGTGTTGCTATGGCTGGACTGAGTTTTGTG
TGACTGAACTTGTGGGAGAGTGGTGCGGGTACCATAACCGCGGTGGTATT
TCCGTATTGCATTGTGTTGATTTTGCTCATTGCCTGATGTATAGACCAGG
TTACAGACAACCAGGCCTGTATCTTGACCCCCAACAAAGTCGAATGCAAT
ACATCCAGTGCAACAAATGAAGCTCTACTACATCGTGGCAGTCAAAACAG
AGCGGCAGTAAATTAGCAGAACTCTATTTTTACTTCTCTGGTTTCTTTTG
AACGCTTCAAATAGCGAAGTCTCTTCAATTCATCGAGATAACGGTCAGCT
GGGAATATGAAGCAAAAGCCTCTGAACTTGTCTTGTCTTTTTTTTCTTTT
TTTTTTGCACGACAGGTAAGCAGATTCGTCAATAGAAACAACACCGGGTC
CTACCTGCTACTCGGATAGATATAATGCTTGCTGGGATCTATCCACGGTC
ACAAAGAGGTCTACCCATTCTGTGACACCCCCATGATGAAGCATGTTGAC
TTCCCTCTTCCTACTAGCCGTTATCGTGCCGAGTGCGCTGCAGACCAATG
ATACTCACACAAGCTTAGGGTTAGGGTTAGGGGTGGCTCGAAGTACGAAG
AGTTGGTCCGATCAACGCCTTTTACCTACCTTATAACCCGAAAGTATTGA
TATCATCGAAGTGCGAATGATTTTCAAATGCGAATATCTCGAGAACTATA
GCGGTGTTGACCATGAGCATAATGCGGAAATCTGGGTACTCGACCGCCGA
ACTTTTGTCATTCTCCGTTCTTGTGTCAGTCGTGTAAACATTCTAACCCC
GGTACAACACCTCTGGGATTTATGGTGTTCCACATTTCGCTGCTATGCCT
GGATCATGTATCAACACCCAACTCTATTCTATTTGTCCGCGTACCTACTC
TCTGCATGTTCCATTTTCTTGTAATCTGAATGAATGCTTCCGGCCCGGGG
CGACGGGCGATTTCCCAGGCGGCTGCTCACGTGTGCGTTGCCTTGGGATT
CACCGCCACAACGGCCGGAGCGATCGAGTGTCTTACAGATGTGGTGAGCT
GTGAGCATAGTAAAATTGCCTTCACCGACTGTAAAGAAATGGTCATCTTT
CACGGTACATTCCACCTTTTTTTTTCGCCGCTGTTCTCCGTGTCGGTAAG
GGATAGATTTTTCTGGTGAATTTAGCCATCGGAAGATGACCGAGCCAACA
TACAGTATGACACATTGAGATGTTTTTAGTGCAGGGAGCAGCTATCTTGT
ATGTGAAGTCGAGCTGAAACGGCAGGAGTCCCGTGGTAATTACGGGATCG
ACATCAGATCGGGTGTACCCTTTCGCAGTGACCGGATGAAAGAACTGTCG
CTCTAATTTTCGAAACAGCATTCGATAGATTTGGGCAGGGGGGGGGGCAC
CAGGGGGGGCAACACATTCTTCGACTGACGGCGGACCTTGTTTTTTGCAT
TAACCAAAATGCGATGCCGCTCCGCACCGAGCTGATCACGTGTGGATCAC
GATGGTCCATGCCATGTAGCAGTTTGCATTAGGTAGTGTACATATAGCCG
AAGAGAACGAAGAGAATACGGACGATGTAATTACTCGTGTTACCGGGTAT
ATCGGCTTGGGTAGTCATATTTGCCATAGTCGACTTGTCTCCTCCAGGTT
ACGCTGCTAGTTTCTCCCAAAGTGGCGCCGTTCATCGTGATGTATACATA
TATATATGTGTGTCATTAGATAGGCGTGCTTGTTCGAGAGAGGAGACCCT
GCAATTATTTTAAGGGGATCGGAATTGAGAAACGTGATCAGCCGGGGGGG
TGGATACTACGTACTACCCTGCCCGCCCCAGTGGTCGCCAGTTTGGTGCC
TTGGACCATGATTAGAGTAAAAGTGTTTCATCCGCACCGTTTACAGTTAT
AGCCAAAACTCGTCGGTGTCCGATAACATCATAAGCATTCAAACAAGGTG
TCGACCCGCGTCGGATTGGATGCTGGTCAGGTTCAACAATACCTGGAGGA
GATTGCCAAGCGGACGATGGAGAATACGTATCGAGCTGGAAGGACGGAGG
CTAACGTAGCCGATGTGCTGCAAGGGTTTGAACAGATGGTGGGCCTTTTT
TTGTGAATATTATATAGCGATGTTTGATTTCAGTCAGGCGTGTTTTGCTC
TTGAAAGTATATGGTGAGGTCAGTATGTGGTGACGAGGCGTTTCCTGTAC
TGAAGCGTGTGTTAACTGAGAAATTGCAAACCCGGAGCAAAGAGTCGACC
CCTCGAGGTAACTTTTCGCTTTTGAGCGTCCACAACCAGCGAATGGAGTT
CAGAGCTGAGCTGATGCTGCCTACTTAGTATTTTCAAGTAGGTAACGATG
CTGTGTGGCACCCGGGACGATACCCTTCTTGACCTTCTCGTGAAGTATTC
AAATAACTCCATACGCTGCTGTGTTCAACGATCTTACAGCTACCTACCAC
TTGCTGAGCAGCAGTAGCCCCATATTTCGTCTGCCCACGGCCCCATCCAT
CCCCCTCTTTGTATGCATCTAGAGTAGGGGGTTCGCTAGATAATACCAAG
TGCACATGAATTTCAAGGACCGGGGGTTGGTTGAATAATAAACGCAAACG
GTTAACGCGCTCCTAATATCTGTACAGCTGTTCATAACATAATGTACAGT
CAGTGCATGCGTGCAACCAAGCATGTAGCTTGTTTACAGCACAAGAGCGT
GAGACGAGCTGTACCGTGAGAGATACTGTGTATATCTGAATATAGGCTAC
CACTGTATTTGGTGCCCCCCTGAATTGTACCGTCATTTCGCCCTCTTTAT
ATATCCACTTCACTACCTAACCTGCTCTTGCCCCCCTTCAGCCGCTTTTG
GCAACGTAGGAAAGAGCGATTGGTCATCAGAAATCGCTCTAATAGAAATA
GAGCTCGGTCCTCCCGAGGACTACATACGTGGTCAATTATTTGACCAATA
CGACATGCGGAACATGAGTACTCTTCTCCCCCCCCCTCGTTTGAGCAGCC
GACGCCGGTGAAGTGGACAGATCTCCGGGATTTCGCGTTCTCCGAAAACG
GTTACACCACCGGCATAGCATCTGCGAAGCGAAGTGCGGCGGCGGCGGCT
GCTCTCAATAGCAACGAAGGCCCTACTGCGAGTGTTCGTGGTGGTGGTAG
TGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig4210:6095..10048+

>mRNA_H-paniculata_contig4210.10790.1 ID=mRNA_H-paniculata_contig4210.10790.1|Name=mRNA_H-paniculata_contig4210.10790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig4210:6095..10048+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATCTCCTACAGATACGGCATCGGAGGGAAAGGTCGACAGTGACGA
ATTCGCGCGTATTTTGACGAAACAGATGGCATCTCCTACAGATACGGCAT
CGGAGGGAAAGGTCGACAGTGACGAATTCGCGCGTATTTTGACGAAACAG
GCGGCTGCTCACGTGTGCGTTGCCTTGGGATTCACCGCCACAACGGCCGG
AGCGATCGAGTGTCTTACAGATGTGGCGGCTGCTCACGTGTGCGTTGCCT
TGGGATTCACCGCCACAACGGCCGGAGCGATCGAGTGTCTTACAGATGTG
GTTCAACAATACCTGGAGGAGATTGCCAAGCGGACGATGGAGAATACGTA
TCGAGCTGGAAGGACGGAGGCTAACGTAGCCGATGTGCTGCAAGGGTTTG
AACAGATGGTTCAACAATACCTGGAGGAGATTGCCAAGCGGACGATGGAG
AATACGTATCGAGCTGGAAGGACGGAGGCTAACGTAGCCGATGTGCTGCA
AGGGTTTGAACAGATGCCGACGCCGGTGAAGTGGACAGATCTCCGGGATT
TCGCGTTCTCCGAAAACGGTTACACCACCGGCATAGCATCTGCGAAGCGA
AGTGCGGCGGCGGCGGCTGCTCTCAATAGCAACGAAGGCCCTACTGCGAG
TGTTCGTGGTGGTGGTAGTGGTCCGACGCCGGTGAAGTGGACAGATCTCC
GGGATTTCGCGTTCTCCGAAAACGGTTACACCACCGGCATAGCATCTGCG
AAGCGAAGTGCGGCGGCGGCGGCTGCTCTCAATAGCAACGAAGGCCCTAC
TGCGAGTGTTCGTGGTGGTGGTAGTGGT
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