prot_H-paniculata_contig4210.10791.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4210.10791.1
Unique Nameprot_H-paniculata_contig4210.10791.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length378
Homology
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BLAST of mRNA_H-paniculata_contig4210.10791.1 vs. uniprot
Match: A0A6H5L1V5_9PHAE (BTP domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V5_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.630e-24
Identity = 71/117 (60.68%), Postives = 77/117 (65.81%), Query Frame = 0 
Query:    6 EERPKRWDQPFHHSVRAIPIP-KNPAPWGGADRGQGGVVEEGEAGGKGGPGVRPPHIPDFMPPLPPGYRFKRNREPAAGPGRSLAEIRPERLKRQRQAETALRNLGAPTIAAAATTA 121
            +E PKRWDQPFHH+V   P+P K  APW   D G     EEGE     GP  RPPHIP FMPPLPP  +    R  +AG  RSLAEIR ERLKRQRQ ETALR+LGAP  AA AT A
Sbjct:  152 QELPKRWDQPFHHAVPPFPMPRKRAAPW---DHG-----EEGEEAATEGPRSRPPHIPAFMPPLPPSTK----RGASAGSDRSLAEIRLERLKRQRQGETALRSLGAPGAAAGATAA 256
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4210.10791.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L1V5_9PHAE3.630e-2460.68BTP domain-containing protein (Fragment) n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019473Transcription factor TFIID, subunit 8, C-terminalPFAMPF10406TAF8_Ccoord: 60..109
e-value: 3.1E-8
score: 34.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4210contigH-paniculata_contig4210:10115..13133 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4210.10791.1mRNA_H-paniculata_contig4210.10791.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4210 10115..13133 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4210.10791.1 ID=prot_H-paniculata_contig4210.10791.1|Name=mRNA_H-paniculata_contig4210.10791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=378bp
VETVEEERPKRWDQPFHHSVRAIPIPKNPAPWGGADRGQGGVVEEGEAGG
KGGPGVRPPHIPDFMPPLPPGYRFKRNREPAAGPGRSLAEIRPERLKRQR
QAETALRNLGAPTIAAAATTAHPPRPATTAAPTPKIRIASNTLRDGRESG
VGSGGCSGGGSWSGDTTSSSSSSNNSSSRKHNGSPMIPKLKLSHGSLLGK
KGPIDGGGSGGRGTPTGTGSFSSYGSGSGSRVNGTGSGSSSYSYGGSGGG
QPPPRGGSGGSGGYREGKSRFASDGGYSGAGGGSGGGNGGGGPRVTTIVG
SKSKNGLVGAGGGSGALGAAGTRGGLPKIAFRAIPPAAVGAKVSGATGSG
AGGVATLSAGLKRPAGKGGSGNGSGARG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019473TFIID_su8_C