mRNA_H-paniculata_contig4210.10791.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4210.10791.1
Unique NamemRNA_H-paniculata_contig4210.10791.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4210.10791.1 vs. uniprot
Match: A0A6H5L1V5_9PHAE (BTP domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V5_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.630e-24
Identity = 71/117 (60.68%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:   16 EERPKRWDQPFHHSVRAIPIP-KNPAPWGGADRGQGGVVEEGEAGGKGGPGVRPPHIPDFMPPLPPGYRFKRNREPAAGPGRSLAEIRPERLKRQRQAETALRNLGAPTIAAAATTA 363
            +E PKRWDQPFHH+V   P+P K  APW   D G     EEGE     GP  RPPHIP FMPPLPP  +    R  +AG  RSLAEIR ERLKRQRQ ETALR+LGAP  AA AT A
Sbjct:  152 QELPKRWDQPFHHAVPPFPMPRKRAAPW---DHG-----EEGEEAATEGPRSRPPHIPAFMPPLPPSTK----RGASAGSDRSLAEIRLERLKRQRQGETALRSLGAPGAAAGATAA 256
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4210.10791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L1V5_9PHAE3.630e-2460.68BTP domain-containing protein (Fragment) n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4210contigH-paniculata_contig4210:10115..13133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1134
Cds size1134
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4210.10791.1prot_H-paniculata_contig4210.10791.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4210 10115..13133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930281.2704298-CDS-H-paniculata_contig4210:10114..102711622930281.2704298-CDS-H-paniculata_contig4210:10114..10271Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4210 10115..10271 +
1691481223.6621122-CDS-H-paniculata_contig4210:10114..102711691481223.6621122-CDS-H-paniculata_contig4210:10114..10271Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4210 10115..10271 +
1622930281.2878826-CDS-H-paniculata_contig4210:11266..113791622930281.2878826-CDS-H-paniculata_contig4210:11266..11379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4210 11267..11379 +
1691481223.6731577-CDS-H-paniculata_contig4210:11266..113791691481223.6731577-CDS-H-paniculata_contig4210:11266..11379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4210 11267..11379 +
1622930281.3037543-CDS-H-paniculata_contig4210:12269..131331622930281.3037543-CDS-H-paniculata_contig4210:12269..13133Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4210 12270..13133 +
1691481223.6832318-CDS-H-paniculata_contig4210:12269..131331691481223.6832318-CDS-H-paniculata_contig4210:12269..13133Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4210 12270..13133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4210.10791.1

>prot_H-paniculata_contig4210.10791.1 ID=prot_H-paniculata_contig4210.10791.1|Name=mRNA_H-paniculata_contig4210.10791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=378bp
VETVEEERPKRWDQPFHHSVRAIPIPKNPAPWGGADRGQGGVVEEGEAGG
KGGPGVRPPHIPDFMPPLPPGYRFKRNREPAAGPGRSLAEIRPERLKRQR
QAETALRNLGAPTIAAAATTAHPPRPATTAAPTPKIRIASNTLRDGRESG
VGSGGCSGGGSWSGDTTSSSSSSNNSSSRKHNGSPMIPKLKLSHGSLLGK
KGPIDGGGSGGRGTPTGTGSFSSYGSGSGSRVNGTGSGSSSYSYGGSGGG
QPPPRGGSGGSGGYREGKSRFASDGGYSGAGGGSGGGNGGGGPRVTTIVG
SKSKNGLVGAGGGSGALGAAGTRGGLPKIAFRAIPPAAVGAKVSGATGSG
AGGVATLSAGLKRPAGKGGSGNGSGARG
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mRNA from alignment at H-paniculata_contig4210:10115..13133+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4210.10791.1 ID=mRNA_H-paniculata_contig4210.10791.1|Name=mRNA_H-paniculata_contig4210.10791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3019bp|location=Sequence derived from alignment at H-paniculata_contig4210:10115..13133+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGAGACGGTGGAGGAAGAGCGACCAAAGAGATGGGACCAGCCGTTTCA
TCACTCAGTGCGAGCGATTCCTATACCCAAAAATCCTGCCCCTTGGGGTG
GTGCTGATAGAGGGCAGGGTGGCGTTGTGGAGGAGGGAGAGGCGGGCGGC
AAGGGAGGTACGATTCTAATGACGGGGGCGGGCTGCGGGGAAGATGGGGG
GGGGGTCGTAAGTTAACCCTGCTATAGTTGGTTGAACTACCACTCTGATT
GAGGTTATGCCTCTGACTTGATCTTCAGTTATATACACCTGTTGGTAAAA
TTAATCATTAGAGATGCCCAACTCTACCGCACATACTTGGTAGAAATGTT
GACCTCACTACACTATACCATATATCAAGGTAACACCCTACAAGATCAGC
AAAGTACTGTCTAATGATTTTTATATGCGCCGCGACAATTAGTTGTCGGT
ATCATTGCGTAGCTGGGGACGTTGATCCGTGGTTGCGTTTTGGAGATGAT
TTTTCGAAGAGTAAAGGCATCTTACAACAAACATCGAGCACTTTGTGGAT
ACAACGATGTGGACAAATATCGTACAACAGGGAGAGATCGCACACGGGGT
GCCAACGTGTTTCTATCCTACAGAGAAAGATCTTTCGGAGATCTGATATG
ACGTGATCGACAAAAACCGTCAGTCGACAGACAGATCTCCGCAAGATCTT
TCCAACAGCACACCATTGGTTGTCTGTGGCACTGTAGATCTCGAGATAAT
CGTCCTTGACAATTTTTTGCACCCCGGTGACATCGATACCTCCGGGTCTT
GCGGTATTCCCTGTCTACTGTGATGAACTGGCGGGCTGTACCATAGTCGT
TGGGATTTCCTGCTTTTTCTATAGGGAATCGATAATCTGACGACCGGCAC
CCCAAAGGGTTACATGTGTCAGGGTGTAGGATGATGCATGCGGCCAGCAT
GGGGTAAAGAGAAGCACCCTTACGGACGTGTCACACAGCTAAATCTCCTT
ATGCGTTTTTTTTATTTTTTATATTAGACGTGACTTTTCACTTGCCGTAG
GTTTTTATCCATGGTGTTACATTAAATTCGGTATTGTGATCCGTTTGGTT
GGTTCTTTGATTACATACGACTGTGTTCTGGATTATGACGGTGACAACAC
AGGACCAGGTGTGAGGCCACCACATATTCCGGATTTCATGCCTCCGTTAC
CTCCGGGCTATCGATTCAAGCGGAACAGGGAGCCAGCGGCGGGGCCCGGG
CGAAGTTTAGCGGAGGTACTGTAGTAGTGTTAACTATCGTCATTATTGTC
TCTCTCTTCCGTTGTCCCCCCCTACTGGTCGAATTCTGCTGATGAATATA
TATATATATATATATTTATATATAAGTGCAGATTGAAGTCGAAAGCGTAA
GCTCAACCTGAGTGCAATGAAATAACAATATAAGGTTCGGAGGTATAATT
CAACTGACCGTCGCAGGACAATTTTGCTACAATAACGAGAGTTTCAGTTA
GCCAAAGTGGAGAGTTATTTTTGAAACTTTCATGGTGTCGGTCGTTCGTA
CGAGCATTATTTCATGTTAAAATCTTACAGGACACATGCGAGTGATACGC
TGATACTGCCTCGTGAAGATTGCTATAGTCCATATTGTGTTCGTGATCGA
AGAGGCGCGGAAAGTTCCTGCACCTTGGTCATGATGGGGTCAAAGTTTTG
GTAGTGTGATCAGGATTTTGTCGGTTTATCAAGCTGCGTACCCACATATA
TATAATCTCCACCCCCCCTCTGTGTGTTATGTGCACTATGGTGTCGTGGT
TTTCCTCACATTTTGTTCGATAAAAACAAACTTTGATGTTACTGTTCAAC
ACATGATAGTCAGGAAAGTAACCTGCGCTGATATCTCTCCGAATATATCC
TCCCTTTTTTTGCCGGAGAGCGTGTATGTGTATGTGGCTTCTGTGACAGG
GTACATACACAGCATTTATATATATATATATATGTGTGTGTGTGTGTGTT
TTCGGATGGCTCATTTATTATTAGGACGGGGTCGTTTTTGCTTCATGCCT
ACCTTTGTTGTCTCTTCCTTACGTTCCCCTTTTGACACTTGATACATGTG
GTTCGTCTTTGAGTTTCTCCCCTCCCGCCCCTCCTCTCCCCCGGCGTTCA
CATAGATCCGACCGGAGCGATTGAAACGGCAAAGACAAGCCGAAACCGCG
CTGCGAAATCTTGGCGCCCCGACCATCGCGGCCGCCGCTACCACGGCGCA
CCCGCCCCGCCCTGCCACCACTGCCGCCCCTACCCCGAAAATAAGGATCG
CGTCGAATACATTGCGGGACGGCCGAGAAAGCGGTGTAGGAAGTGGAGGC
TGTAGCGGGGGTGGGAGTTGGAGTGGAGATACTACAAGTAGCAGTAGTAG
CAGCAACAACAGCAGCAGCAGAAAGCATAACGGCTCGCCGATGATTCCGA
AATTAAAGCTGTCGCACGGGAGCTTGCTTGGCAAGAAGGGGCCTATCGAC
GGCGGGGGAAGTGGAGGCCGAGGAACGCCAACCGGAACCGGTTCCTTTTC
TTCGTATGGTTCTGGTTCTGGTTCTAGGGTTAACGGAACCGGTTCTGGAT
CGTCTTCGTATTCTTACGGAGGGTCTGGTGGAGGGCAGCCGCCACCCCGC
GGAGGTTCAGGTGGCAGTGGCGGTTACAGGGAAGGGAAGTCGAGATTTGC
CTCGGACGGTGGTTACAGCGGAGCGGGAGGCGGCAGCGGCGGCGGAAATG
GAGGGGGCGGTCCGCGAGTGACAACAATCGTTGGTAGCAAGAGTAAAAAT
GGATTGGTTGGAGCGGGGGGAGGCAGCGGCGCGTTAGGAGCAGCGGGTAC
GAGGGGTGGTTTGCCAAAGATTGCGTTTCGAGCGATACCTCCTGCGGCTG
TGGGGGCTAAGGTGTCTGGTGCGACAGGGTCGGGTGCGGGTGGTGTGGCG
ACGTTGTCGGCGGGACTAAAGCGGCCAGCGGGAAAAGGGGGCAGTGGTAA
TGGCAGTGGGGCGAGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4210:10115..13133+

>mRNA_H-paniculata_contig4210.10791.1 ID=mRNA_H-paniculata_contig4210.10791.1|Name=mRNA_H-paniculata_contig4210.10791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2268bp|location=Sequence derived from alignment at H-paniculata_contig4210:10115..13133+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGAGACGGTGGAGGAAGAGCGACCAAAGAGATGGGACCAGCCGTTTCA
TCACTCAGTGCGAGCGATTCCTATACCCAAAAATCCTGCCCCTTGGGGTG
GTGCTGATAGAGGGCAGGGTGGCGTTGTGGAGGAGGGAGAGGCGGGCGGC
AAGGGAGGTCGAGACGGTGGAGGAAGAGCGACCAAAGAGATGGGACCAGC
CGTTTCATCACTCAGTGCGAGCGATTCCTATACCCAAAAATCCTGCCCCT
TGGGGTGGTGCTGATAGAGGGCAGGGTGGCGTTGTGGAGGAGGGAGAGGC
GGGCGGCAAGGGAGGACCAGGTGTGAGGCCACCACATATTCCGGATTTCA
TGCCTCCGTTACCTCCGGGCTATCGATTCAAGCGGAACAGGGAGCCAGCG
GCGGGGCCCGGGCGAAGTTTAGCGGAGGACCAGGTGTGAGGCCACCACAT
ATTCCGGATTTCATGCCTCCGTTACCTCCGGGCTATCGATTCAAGCGGAA
CAGGGAGCCAGCGGCGGGGCCCGGGCGAAGTTTAGCGGAGATCCGACCGG
AGCGATTGAAACGGCAAAGACAAGCCGAAACCGCGCTGCGAAATCTTGGC
GCCCCGACCATCGCGGCCGCCGCTACCACGGCGCACCCGCCCCGCCCTGC
CACCACTGCCGCCCCTACCCCGAAAATAAGGATCGCGTCGAATACATTGC
GGGACGGCCGAGAAAGCGGTGTAGGAAGTGGAGGCTGTAGCGGGGGTGGG
AGTTGGAGTGGAGATACTACAAGTAGCAGTAGTAGCAGCAACAACAGCAG
CAGCAGAAAGCATAACGGCTCGCCGATGATTCCGAAATTAAAGCTGTCGC
ACGGGAGCTTGCTTGGCAAGAAGGGGCCTATCGACGGCGGGGGAAGTGGA
GGCCGAGGAACGCCAACCGGAACCGGTTCCTTTTCTTCGTATGGTTCTGG
TTCTGGTTCTAGGGTTAACGGAACCGGTTCTGGATCGTCTTCGTATTCTT
ACGGAGGGTCTGGTGGAGGGCAGCCGCCACCCCGCGGAGGTTCAGGTGGC
AGTGGCGGTTACAGGGAAGGGAAGTCGAGATTTGCCTCGGACGGTGGTTA
CAGCGGAGCGGGAGGCGGCAGCGGCGGCGGAAATGGAGGGGGCGGTCCGC
GAGTGACAACAATCGTTGGTAGCAAGAGTAAAAATGGATTGGTTGGAGCG
GGGGGAGGCAGCGGCGCGTTAGGAGCAGCGGGTACGAGGGGTGGTTTGCC
AAAGATTGCGTTTCGAGCGATACCTCCTGCGGCTGTGGGGGCTAAGGTGT
CTGGTGCGACAGGGTCGGGTGCGGGTGGTGTGGCGACGTTGTCGGCGGGA
CTAAAGCGGCCAGCGGGAAAAGGGGGCAGTGGTAATGGCAGTGGGGCGAG
GGGGATCCGACCGGAGCGATTGAAACGGCAAAGACAAGCCGAAACCGCGC
TGCGAAATCTTGGCGCCCCGACCATCGCGGCCGCCGCTACCACGGCGCAC
CCGCCCCGCCCTGCCACCACTGCCGCCCCTACCCCGAAAATAAGGATCGC
GTCGAATACATTGCGGGACGGCCGAGAAAGCGGTGTAGGAAGTGGAGGCT
GTAGCGGGGGTGGGAGTTGGAGTGGAGATACTACAAGTAGCAGTAGTAGC
AGCAACAACAGCAGCAGCAGAAAGCATAACGGCTCGCCGATGATTCCGAA
ATTAAAGCTGTCGCACGGGAGCTTGCTTGGCAAGAAGGGGCCTATCGACG
GCGGGGGAAGTGGAGGCCGAGGAACGCCAACCGGAACCGGTTCCTTTTCT
TCGTATGGTTCTGGTTCTGGTTCTAGGGTTAACGGAACCGGTTCTGGATC
GTCTTCGTATTCTTACGGAGGGTCTGGTGGAGGGCAGCCGCCACCCCGCG
GAGGTTCAGGTGGCAGTGGCGGTTACAGGGAAGGGAAGTCGAGATTTGCC
TCGGACGGTGGTTACAGCGGAGCGGGAGGCGGCAGCGGCGGCGGAAATGG
AGGGGGCGGTCCGCGAGTGACAACAATCGTTGGTAGCAAGAGTAAAAATG
GATTGGTTGGAGCGGGGGGAGGCAGCGGCGCGTTAGGAGCAGCGGGTACG
AGGGGTGGTTTGCCAAAGATTGCGTTTCGAGCGATACCTCCTGCGGCTGT
GGGGGCTAAGGTGTCTGGTGCGACAGGGTCGGGTGCGGGTGGTGTGGCGA
CGTTGTCGGCGGGACTAAAGCGGCCAGCGGGAAAAGGGGGCAGTGGTAAT
GGCAGTGGGGCGAGGGGG
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