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Homology
BLAST of mRNA_H-paniculata_contig4204.10778.1 vs. uniprot
Match: A0A6H5JLL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL1_9PHAE) HSP 1 Score: 217 bits (553), Expect = 2.940e-54 Identity = 121/262 (46.18%), Postives = 156/262 (59.54%), Query Frame = 2
Query: 440 GMENTLVMAFLVPKTNEEVGNTQKPLRQEMPYKSLFNALNDLCQTRHLLMLAPGFRLGRGTEKVVANALAAPLEKPRVLVIPQWCIDPEPK--SKAMPSLDIEDARRRAGEGTAGLCHERAKINEKGY--------------QNVWLGAALA-HEPDKNEAEVRNGRSLLRSDMINPVIVVDMWSAPALFLRHVEEFTRSQCFDGAYARGLWTAGFSFAVLPEALSFYVASQLPSNGMGCRAGAETPAVAYSLFLKSIRQVY 1174
G++N ++ F P + N +P K+L NA+ DLCQTRHLL+L FR+ RG E+ V AL P E PRVL+IPQWC+D + + S +P+L++ED RR+A +GTA LC + N Y LG A A H +NG +LL SD ++PVIVVDMWSAPALFLRH+EE + S+CFDGAYARGLW AGFSF VLPEA +F ++ LP CR G AYS FL+ +R+VY
Sbjct: 685 GLDNAYIVFFFSPSSGGHEVNGG-----HLPTKALLNAVGDLCQTRHLLILPSDFRIARGAEQAVVTALKTPTEAPRVLIIPQWCVDRDHERGSGELPTLELEDLRRQAADGTADLCFSDTRANRDLYLGGSVLEGAVYGEGAGEGLGDAGARHRGMGGTRTTKNGLALLLSDAVSPVIVVDMWSAPALFLRHIEELSGSRCFDGAYARGLWAAGFSFEVLPEAAAF--SASLPPRTDQCRHGVMVQMGAYSTFLQDVRRVY 939
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 60.5 |
| Seed ortholog evalue | 2.2e-06 |
| Seed eggNOG ortholog | 2880.D7G2Z3 |
| Hectar predicted targeting category | signal anchor |
| EggNOG OGs | 2BMGJ@1,2S1KX@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 4 |
| Model size | 3670 |
| Cds size | 1266 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4204.10778.1 >prot_H-paniculata_contig4204.10778.1 ID=prot_H-paniculata_contig4204.10778.1|Name=mRNA_H-paniculata_contig4204.10778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=422bp
MPVPIGGVGNFVFYALFVTFVHSFGYLFGVLTVAVPPSVFLCRLGQILVL ILSVLDADEVMTRLVEEEGLEDSCGMENTLVMAFLVPKTNEEVGNTQKPL RQEMPYKSLFNALNDLCQTRHLLMLAPGFRLGRGTEKVVANALAAPLEKP RVLVIPQWCIDPEPKSKAMPSLDIEDARRRAGEGTAGLCHERAKINEKGY QNVWLGAALAHEPDKNEAEVRNGRSLLRSDMINPVIVVDMWSAPALFLRH VEEFTRSQCFDGAYARGLWTAGFSFAVLPEALSFYVASQLPSNGMGCRAG AETPAVAYSLFLKSIRQVYSNARTTSTNNVDQFRLMNKGYDRYPATPFKG KVKHSRKSMKKRFRTRGSVEQAPDTSGDGRMKFDRQRDTGSADIIIKHRR GSEPIGRLPQQPSDGANADVE* back to topmRNA from alignment at H-paniculata_contig4204:11328..16371+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4204.10778.1 ID=mRNA_H-paniculata_contig4204.10778.1|Name=mRNA_H-paniculata_contig4204.10778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5044bp|location=Sequence derived from alignment at H-paniculata_contig4204:11328..16371+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GAGGGGAGGAAGCGAAGTAGTTTGCGTGGAAGAAAGGATAAAGGAAAAGG
ATGGCCTTCGTTGTCTTATCTTGTCTTCTCTCGTCTTGTAGGTTCTGTTC
CGCGACGCCGCTGTGGGGATTGAAATACATACACTACAATCCAGATAGCG
AAGCACGTGGAAGCCTTTTTAGATAATGGGACGCTTACGTGCGTTCTAGG
GTCTTGTGGCTACAGATATGCCTGTCCCAATTGGTGGTGTTGGTAATTTT
GTGTTCTATGCTTTGTTCGTTACGTTTGTTCATTCATTTGGCTATTTGTT
TGGGGTGTTGACTGTTGCGGTACCACCCTCTGTGTTTCTCTGTCGCCTTG
GCCAGATCCTGGTGTTGATCCTCAGTGTGCTCGATGCGGATGAAGTGATG
ACCAGGCTCGTCGAGGAGGAAGGCTTGGAGGACAGCTGTGGCATGGAGAA
CACGCTCGTGATGGCTTTCCTTGTGCCAAAGACAAACGAGGAGGTGGGCA
ATACCCAGAAGCCGCTCCGCCAGGAGATGCCGTACAAGTCGCTATTCAAC
GCACTCAACGATTTGTGCCAGACAAGGTGCAGTTGACTCTCGACATGGTT
TTCGTTTGAACAATTACTGTTGTTTCAAATTAGTAAAAAATTCGTATGCT
TTTTTGGTATTCAAACAAGGAGATAAGAAGGATCCAGGAAGAAAGGGAGG
AAGAGAGGAATGTTGAAATTTTTGTTCGTAATAGTAGGGTGCGGTGCGAC
CGTGGCAACGACACATGAAGTGGTGTATCGCTGTACCGCTGACCCAATGC
AAGCATGCCCGAAATTCCTAATGAATACAGTCATTTACCATGCCACGCTC
CGCCGTATCCGATCCCACACTACCACAATCACCCGCACCGTACCGCACCG
CACCCCACACTTCTCCAGACATCTTCTGATGCTGGCCCCCGGCTTCCGAC
TTGGGCGCGGTACCGAGAAAGTGGTAGCGAATGCTCTTGCAGCCCCATTG
GAGAAGCCGCGGGTGTTGGTTATCCCCCAGTGGTGTATCGACCCTGAGCC
TAAGTCCAAGGCTATGCCCTCCTTGGATATAGAAGACGCCAGGAGAAGGG
CTGGGGAAGGAACGGCGGGGTTATGTCACGAGCGCGCGAAAATCAACGAA
AAGGGATATCAAAATGTTTGGCTCGGTGCAGCTCTCGCACACGAACCAGA
TAAGAACGAGGCAGAGGTAAGGAACGGCCGTTCTTTACTGAGGTCAGATA
TGATAAACCCCGTCATTGTGGTGGACATGTGGTCGGCGCCAGCACTGTTC
TTGCGGCATGTTGAGGTGAGAGTATTGAATGCGCGCGGGGTCAAGGTGGG
GGAGTGGGGGATGTTTCAAAGCTGCATGTTGTGAGCGCATCAAAATGCAA
GAACAAAATTATAATGAACTGGTGGAATTTGGTACCTCGAGGGTTGCCAG
TTGTTGGCAATAGAGCGCTACTGTATCACAGATGTGTGTGTGTGTGTGGG
CGTGGAAGGGCAATGCTTTTTGCCTTTCGGGCTGTCGTTAGCGGTCAAAG
GCTAACTTTCAGTAGACAATTCTAGGATAGCGCGGTGGTGTACTGGAGAA
ATGTAGGGCAGAGTTCAATTCTCATGTGCTTGCGTGTTTGTTTCAGCCAC
CAGGACTTGCAGACATTCGGTTGCTATTGGCGCTGTCGATGGCGTAGTGA
CATTCTAAGGACAGGCCCTCTTTGGTCTATCAAAAATCACTCATAGTAGC
TCGCCCGATTCGTCCTGACGAGGAACTCTTTCGCTGTCACATGTTGCATA
TTTCCCAAATCCTCATCCTTCGATGTTCTTTTTTTCGTTTCTACAAAATT
CTCGATCTTGGATTTACACGCAGATGCTTGGTTGCCGCTCTCTCGCGCGC
CCTGACTGAACATTCATCCATTCATTTTTTTCGGCTTTTTCGTTCGCCTC
TGTTCTGCTGTCCGCCGGCAGGAGTTCACCCGATCGCAATGTTTTGATGG
AGCCTACGCTCGAGGTCTGTGGACAGCGGGGTTTTCTTTTGCGGTGTTAC
CAGAAGCACTCTCTTTTTACGTCGCTTCGCAGTTACCGTCCAATGGTATG
GGTTGTCGTGCAGGCGCAGAGACACCAGCTGTGGCCTATTCGCTCTTCCT
CAAGGTATGACACAGCCCTCGAGATTTTAGAATGTGCCAAGGCCAATCTC
TGCTCGTTCACATCAAATGTATATGTAGAGAGGGAGATAATATAAACATG
CTATTTCATACTGTTTCCAAGAGCGATTTGCAGGAGCTCAAGTGCCGCAC
TCGCTCGAGCACATGCGCATCTATCAGTCGACGTGTGGATCCTGCTGGCG
GACATCGCGTCGGTATTTGCTTGTCCCCCGTGTTGTAAAGGGGGCAAACT
CTTTCTGTTTATCGCATTGCTCTCCACCAGACCTATTCTCTGCTACAACA
AGCCAATCGTTGAAATGACCCTCCCCCTCCCACGGCGGATTCGCCTTCCT
TGTTCTGCGCTCTGCTCGCTCGTCTGGCAGTCAATCCGACAGGTGTACTC
CAATGCTCGTACTACCTCCACTAACAACGTGGACCAGTTCAGGCTTATGA
ACAAAGGATACGATCGGTACCCGGCGACGCCTTTTAAAGGAAAGGTGAAG
CATTCTCGAAAGTCGATGAAGAAGAGATTCCGAACCCGCGGGAGCGTGGA
ACAGGCGCCCGACACAAGTGGGGACGGAAGGATGAAGTTTGATCGGCAGC
GAGATACGGGGTCCGCGGACATAATAATAAAACACCGACGAGGATCTGAG
CCAATCGGGAGATTACCACAGCAACCGTCAGACGGTGCAAATGCTGATGT
AGAGTAGTTTGCTTGCAGTTTTTCTGTGTTTCATTTTCTGCTTTTCTGGT
TCGTGGTTGGTTGTGTACGGCACGGCAGCATTGCACATGTGCAACTTAGT
CGTTCTGCAGGGGTATGGCAGGGGCGAAGTGGGGATGTATGGGGGTGTTT
TGTATGGTAGCAGTAAATATTCACAGTGCGGTGCCCTGTCGGTTTGTATG
ATACGTGCTACGACGATTTCTGGGATGGTATGTTTGACGATTGTCGTACC
AAACCTGGAGGCAAGTGGAGGATCGTAGTTAATTGAATGATGGATAATGA
ATACAAATGACGGTGCCTTGTGCAGCGATGCTTTCCCGCTTTCATGGGCC
ACGCAAGCCTTTTTTTTTCTTTTTTTTTTCTCGGTAGCACTTGTCGCACT
TGTCAATGTGCACATAGAAATGCAGCTCCCATGGGCCGAAGTTAAGAATC
ATGGAACCGAGATTTGTTGGGCTATGTAGCTCTCGTGTACAGCTGCGTAC
GTCATGAGAAATGGTCGGGTTGCGTGATTTATGCTTGTGTGAAGACGTAC
CTACATGCTTTGGGGGGCAAGGGGGATTCGAGTTACTGATTGTACTGGTA
CTGTAGAAGATCTAATGCACCAACCATTGCCCTTGGGGGATGGTTCGTTG
AGCAGGTTATTCCTTAGTTTATTTTGTTTTTCATGGCGATGTATTATAAT
CACTTAATCTACCACACATGAAGGGGGAATCCACGGGCTCCCCTCCTTTA
TCCTGTCGTTAGCCTATCTATCACTTGCCTTTTCTGAAAAGTTTGATCGC
CAGGGTTGGACATACTGGTTTGGATAGTCGCTTTTTTCTCCCTGCCTTTA
TTGTGGGACAAACGTGTTTTGTTGGCCTATATAGGTCTTTTTGACAGGTG
GCTAGTTTTTTGGCCGCATTCAAAGACAAGGGATCTGAACGGTGGTGTTT
CGTGTGTGGGCGCTCTTCTAGTGTTTACTCAAAAGACTTGTTTGTCGTGT
GTATTCCCACGTCTGTAGCGCGTCGGCTACAAGTGTAGCTGCAGGTGTCA
CGGGTACTCGTGTGCAGTACTTACTCGTTTTATTATGTGCGTTTTAGTGT
TCGCCTCGCGCGTTGTGATGTGTATTTTCCTGTTGTGTAGTAGCCTCTTT
TCTTCTTTTTTTTGTGATTTTGCCTGTTCGTTACTTGCCTGTGTGCTTGC
CTGTTGTGTGCTGGAGGACTCGAATTTCTCTGTGGTTGGCCTTGCCGCTT
GGAACTCTAAATGATGACTTCTTACAAAGGTTCTTGTGTAGCCCTGGGAG
TGATTCCCGGCGCTTTTTTCCGCGTCTCGACAGTCGAATATACTACTAGT
GCAATTATTACAAAAACGTTAGACACACAAGGTAGGTGTGTGGCGCGCTT
ATCAATCCAATGCGAGGTGGATTGGATGGTCATAGCAAATGTTTTTTTTC
GTGACTTGACTATTTCCTTGTTATTAGTGTCTGCTGCTGCCTTGTGTGGT
AAAATTGCAAGAGTATTGGTCGATGGTCGTACCAAAATGAGTCAAACACA
CAGCTAGTTCGAACCGACCAAAAGATGAAAACGTGAGTTGCTTGTGCATG
GCGGTGACCGCGGGACAGGCGTGCCCCTAATTTTTCTGATATTGGCGTAG
AAACATGGAACATCAACTCAACTGTCTGTCTGTATTGTGTGTTTGGGTGG
CAGGACAGGGAGAGACATGAAGTAGTAGCCTGTTTTTTTGTTTGTGTTTA
AGGGTGTTACTTCGTACTTGACTGTTGCGTTTACATCGCTTTGGAGGTCT
GTCTTTCTGAGTGAGCATGGATTGATTATTTACGATATCCATCCAATATG
ATATATTATCGTCATCATTAGTAGCATGTCTCGCGTAGCGAGGGGGAAGG
GAAGGAAGAAAGGTGCAAGGAAAGGAATATAATAAGGGTAGATGTATGGT
CGTCTTCTTCATGGTAGATACTGTAACCAACACAGCAGCGGTGGTGGTGG
AATTGAATGAACTATGCATGAGTCAAAGCGCTTTGATTTATCGTGCTCAT
ATTGGATACAACAATATGTTGGTGAAATGAGGAACGGGTCCTATACGGAA
AACGTCTTACTTGCCCGCGATCGATTAACGAGAGGACGCTTTCGAGTGGC
CAATCTCTGGGGGGGATCGATTTTGAGGTAGTAGCCGTAGGATT back to topCoding sequence (CDS) from alignment at H-paniculata_contig4204:11328..16371+ >mRNA_H-paniculata_contig4204.10778.1 ID=mRNA_H-paniculata_contig4204.10778.1|Name=mRNA_H-paniculata_contig4204.10778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2532bp|location=Sequence derived from alignment at H-paniculata_contig4204:11328..16371+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGCCTGTCCCAATTGGTGGTGTTGGTAATTTTGTGTTCTATGCTTTGTT CGTTACGTTTGTTCATTCATTTGGCTATTTGTTTGGGGTGTTGACTGTTG CGGTACCACCCTCTGTGTTTCTCTGTCGCCTTGGCCAGATCCTGGTGTTG ATCCTCAGTGTGCTCGATGCGGATGAAGTGATGACCAGGCTCGTCGAGGA GGAAGGCTTGGAGGACAGCTGTGGCATGGAGAACACGCTCGTGATGGCTT TCCTTGTGCCAAAGACAAACGAGGAGGTGGGCAATACCCAGAAGCCGCTC CGCCAGGAGATGCCGTACAAGTCGCTATTCAACGCACTCAACGATTTGTG CCAGACAAGATGCCTGTCCCAATTGGTGGTGTTGGTAATTTTGTGTTCTA TGCTTTGTTCGTTACGTTTGTTCATTCATTTGGCTATTTGTTTGGGGTGT TGACTGTTGCGGTACCACCCTCTGTGTTTCTCTGTCGCCTTGGCCAGATC CTGGTGTTGATCCTCAGTGTGCTCGATGCGGATGAAGTGATGACCAGGCT CGTCGAGGAGGAAGGCTTGGAGGACAGCTGTGGCATGGAGAACACGCTCG TGATGGCTTTCCTTGTGCCAAAGACAAACGAGGAGGTGGGCAATACCCAG AAGCCGCTCCGCCAGGAGATGCCGTACAAGTCGCTATTCAACGCACTCAA CGATTTGTGCCAGACAAGACATCTTCTGATGCTGGCCCCCGGCTTCCGAC TTGGGCGCGGTACCGAGAAAGTGGTAGCGAATGCTCTTGCAGCCCCATTG GAGAAGCCGCGGGTGTTGGTTATCCCCCAGTGGTGTATCGACCCTGAGCC TAAGTCCAAGGCTATGCCCTCCTTGGATATAGAAGACGCCAGGAGAAGGG CTGGGGAAGGAACGGCGGGGTTATGTCACGAGCGCGCGAAAATCAACGAA AAGGGATATCAAAATGTTTGGCTCGGTGCAGCTCTCGCACACGAACCAGA TAAGAACGAGGCAGAGGTAAGGAACGGCCGTTCTTTACTGAGGTCAGATA TGATAAACCCCGTCATTGTGGTGGACATGTGGTCGGCGCCAGCACTGTTC TTGCGGCATGTTGAGACATCTTCTGATGCTGGCCCCCGGCTTCCGACTTG GGCGCGGTACCGAGAAAGTGGTAGCGAATGCTCTTGCAGCCCCATTGGAG AAGCCGCGGGTGTTGGTTATCCCCCAGTGGTGTATCGACCCTGAGCCTAA GTCCAAGGCTATGCCCTCCTTGGATATAGAAGACGCCAGGAGAAGGGCTG GGGAAGGAACGGCGGGGTTATGTCACGAGCGCGCGAAAATCAACGAAAAG GGATATCAAAATGTTTGGCTCGGTGCAGCTCTCGCACACGAACCAGATAA GAACGAGGCAGAGGTAAGGAACGGCCGTTCTTTACTGAGGTCAGATATGA TAAACCCCGTCATTGTGGTGGACATGTGGTCGGCGCCAGCACTGTTCTTG CGGCATGTTGAGGAGTTCACCCGATCGCAATGTTTTGATGGAGCCTACGC TCGAGGTCTGTGGACAGCGGGGTTTTCTTTTGCGGTGTTACCAGAAGCAC TCTCTTTTTACGTCGCTTCGCAGTTACCGTCCAATGGTATGGGTTGTCGT GCAGGCGCAGAGACACCAGCTGTGGCCTATTCGCTCTTCCTCAAGGAGTT CACCCGATCGCAATGTTTTGATGGAGCCTACGCTCGAGGTCTGTGGACAG CGGGGTTTTCTTTTGCGGTGTTACCAGAAGCACTCTCTTTTTACGTCGCT TCGCAGTTACCGTCCAATGGTATGGGTTGTCGTGCAGGCGCAGAGACACC AGCTGTGGCCTATTCGCTCTTCCTCAAGTCAATCCGACAGGTGTACTCCA ATGCTCGTACTACCTCCACTAACAACGTGGACCAGTTCAGGCTTATGAAC AAAGGATACGATCGGTACCCGGCGACGCCTTTTAAAGGAAAGGTGAAGCA TTCTCGAAAGTCGATGAAGAAGAGATTCCGAACCCGCGGGAGCGTGGAAC AGGCGCCCGACACAAGTGGGGACGGAAGGATGAAGTTTGATCGGCAGCGA GATACGGGGTCCGCGGACATAATAATAAAACACCGACGAGGATCTGAGCC AATCGGGAGATTACCACAGCAACCGTCAGACGGTGCAAATGCTGATGTAG AGTAGTCAATCCGACAGGTGTACTCCAATGCTCGTACTACCTCCACTAAC AACGTGGACCAGTTCAGGCTTATGAACAAAGGATACGATCGGTACCCGGC GACGCCTTTTAAAGGAAAGGTGAAGCATTCTCGAAAGTCGATGAAGAAGA GATTCCGAACCCGCGGGAGCGTGGAACAGGCGCCCGACACAAGTGGGGAC GGAAGGATGAAGTTTGATCGGCAGCGAGATACGGGGTCCGCGGACATAAT AATAAAACACCGACGAGGATCTGAGCCAATCGGGAGATTACCACAGCAAC CGTCAGACGGTGCAAATGCTGATGTAGAGTAG back to top
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