mRNA_H-paniculata_contig420.10771.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig420.10771.1
Unique NamemRNA_H-paniculata_contig420.10771.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig420.10771.1 vs. uniprot
Match: A0A2P6V1L4_9CHLO (Ribonuclease P subunit p25 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V1L4_9CHLO)

HSP 1 Score: 115 bits (287), Expect = 9.950e-26
Identity = 72/158 (45.57%), Postives = 89/158 (56.33%), Query Frame = 2 
Query:  107 NEVRITQQGKTHMYISHAQSLLTEKGAGSITIKALGRAINKAITIAEILKRRVPGLHQISDISSTELACAPQQQIVNWAPKQQQEEEDGVDADKYSXXXXXXXXXXXXXXXXXXXXXXXXDEKVATTRRVSVIAITLSFAPLDTSHIGYQSPLPPEEL 580
            NEVRIT QGK+  YIS+  SLLTEKG  ++ +KA+G+AINK +TIAEI+KRR+ GLHQ + ISS EL         +W PK     E+G+D                               ++ TTR VSVI ITLS  PLDTS  GYQ PLP  E+
Sbjct:   19 NEVRITSQGKSRSYISYGTSLLTEKGHSAVVLKAMGKAINKTVTIAEIMKRRIVGLHQCTAISSVELKD-------HWEPK-----EEGLD-------------------------------RIETTRHVSVITITLSKEPLDTSLPGYQPPLPESEV 133
[Close]
BLAST of mRNA_H-paniculata_contig420.10771.1 vs. uniprot
Match: A0A2P6TCW8_CHLSO (Ribonuclease P subunit p25 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TCW8_CHLSO)

HSP 1 Score: 114 bits (284), Expect = 2.330e-25
Identity = 72/159 (45.28%), Postives = 87/159 (54.72%), Query Frame = 2 
Query:  104 KNEVRITQQGKTHMYISHAQSLLTEKGAGSITIKALGRAINKAITIAEILKRRVPGLHQISDISSTELACAPQQQIVNWAPKQQQEEEDGVDADKYSXXXXXXXXXXXXXXXXXXXXXXXXDEKVATTRRVSVIAITLSFAPLDTSHIGYQSPLPPEEL 580
            +NEVRIT QGK+  YIS+  SLLTEKG  S+ +KA+G+AINK +TIAEI+KRR+ GLHQ + ISS EL          W PK     E+G+D                                + TTR VSVI I LS  PLDTS  GYQ PLP  E+
Sbjct:   18 ENEVRITSQGKSRSYISYGTSLLTEKGHSSVVLKAMGKAINKTVTIAEIMKRRIAGLHQNTAISSVELTD-------KWEPK-----EEGLDP-------------------------------IETTRHVSVITIILSKDPLDTSSTGYQPPLPESEV 133
[Close]
BLAST of mRNA_H-paniculata_contig420.10771.1 vs. uniprot
Match: A0A388K547_CHABU (Alba domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K547_CHABU)

HSP 1 Score: 106 bits (265), Expect = 2.500e-22
Identity = 74/194 (38.14%), Postives = 99/194 (51.03%), Query Frame = 2 
Query:   98 LTKNEVRITQQGKTHMYISHAQSLLTEKGAGSITIKALGRAINKAITIAEILKRRVPGLHQISDISSTELACAPQQQIVNWAPKQQQEEEDGVDADKYSXXXXXXXXXXXXXXXXXXXXXXXXDEKVATTRRVSVIAITLSFAPLDTSHIGYQSPLPPEELNLAGGGGRGAMRGRPPSDRGGYTGRGRGRGWSR 679
            +++NE+RIT QGK   YI++A +LL EKGA  I +KA+GRAINK +TIAEI+KRRV GLHQI+ I ST++          W P      E+G++                               ++ TTR VS+  I LS   LD +  GYQ PLPP+++                 D  G + RGRGRGW R
Sbjct:   16 ISENEIRITTQGKMRNYITYATTLLQEKGATEIVLKAMGRAINKTVTIAEIIKRRVAGLHQITTIGSTDITDL-------WEPL-----EEGLN-------------------------------RLETTRHVSMTTIILSTKELDKTSTGYQPPLPPDQVKPLA-----------EIDYEGGSPRGRGRGWGR 155
[Close]
BLAST of mRNA_H-paniculata_contig420.10771.1 vs. uniprot
Match: A0A7J7PXC7_9CHLO (DNA/RNA-binding protein alba-like protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PXC7_9CHLO)

HSP 1 Score: 105 bits (262), Expect = 2.610e-22
Identity = 63/161 (39.13%), Postives = 89/161 (55.28%), Query Frame = 2 
Query:   98 LTKNEVRITQQGKTHMYISHAQSLLTEKGAGSITIKALGRAINKAITIAEILKRRVPGLHQISDISSTELACAPQQQIVNWAPKQQQEEEDGVDADKYSXXXXXXXXXXXXXXXXXXXXXXXXDEKVATTRRVSVIAITLSFAPLDTSHIGYQSPLPPEEL 580
            + +NEVRIT   K   YI++A +LL EKG  S+ +K +G+AINK + +AEI+KRR+ GLHQI++  ST +          W PK     E+G+D                               ++ TTRRVSVI ITLS  PLD+S++GYQ PLP +++
Sbjct:   16 IQENEVRITAVNKVRNYITYAMALLEEKGHSSVVLKGMGKAINKTVVVAEIIKRRMVGLHQITETCSTNIVDV-------WEPK-----EEGLD-------------------------------RLETTRRVSVITITLSREPLDSSNVGYQPPLPEDQV 133
[Close]
BLAST of mRNA_H-paniculata_contig420.10771.1 vs. uniprot
Match: A0A383WIK4_TETOB (Alba domain-containing protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WIK4_TETOB)

HSP 1 Score: 105 bits (262), Expect = 3.320e-22
Identity = 64/161 (39.75%), Postives = 88/161 (54.66%), Query Frame = 2 
Query:   98 LTKNEVRITQQGKTHMYISHAQSLLTEKGAGSITIKALGRAINKAITIAEILKRRVPGLHQISDISSTELACAPQQQIVNWAPKQQQEEEDGVDADKYSXXXXXXXXXXXXXXXXXXXXXXXXDEKVATTRRVSVIAITLSFAPLDTSHIGYQSPLPPEEL 580
            + +NEVRIT   K   YIS+A +LL EKG  S+ +K +G+AINK + +AEILKRR+ GLHQ++ I+ST +          W PK     E+G+D                               ++ TTRRVSVI I LS  PLD+S +GYQ PLP +++
Sbjct:   16 IQENEVRITAVNKVRNYISYAMALLEEKGHSSVVLKGMGKAINKTVVVAEILKRRMVGLHQLTSIASTNIVDV-------WEPK-----EEGLD-------------------------------RLETTRRVSVITIILSREPLDSSDVGYQPPLPEDQV 133
[Close]
BLAST of mRNA_H-paniculata_contig420.10771.1 vs. uniprot
Match: A0A2U1PXI8_ARTAN (DNA/RNA-binding protein Alba-like protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PXI8_ARTAN)

HSP 1 Score: 105 bits (261), Expect = 5.060e-22
Identity = 64/164 (39.02%), Postives = 87/164 (53.05%), Query Frame = 2 
Query:   98 LTKNEVRITQQGKTHMYISHAQSLLTEKGAGSITIKALGRAINKAITIAEILKRRVPGLHQISDISSTELACAPQQQIVNWAPKQQQEEEDGVDADKYSXXXXXXXXXXXXXXXXXXXXXXXXDEKVATTRRVSVIAITLSFAPLDTSHIGYQSPLPPEELNLA 589
            + +NE+RIT QG+   YI++A +LL EKG+  I  KA+GRAINK +TI E++KRR+ GLHQI+ I ST++          W P      E+G+                                 + TTR VSVI ITLS   LDTS IGYQ PLP +++  +
Sbjct:   16 INENEIRITSQGRMRNYITYAMALLQEKGSSEIVFKAMGRAINKTVTIVELIKRRIVGLHQITSIGSTDITDT-------WEPL-----EEGL-------------------------------LPIETTRHVSVITITLSTKELDTSSIGYQPPLPADQVKAS 136
[Close]
BLAST of mRNA_H-paniculata_contig420.10771.1 vs. uniprot
Match: UPI000C1D5FF5 (ribonuclease P protein subunit p25-like protein n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D5FF5)

HSP 1 Score: 104 bits (260), Expect = 6.260e-22
Identity = 61/163 (37.42%), Postives = 91/163 (55.83%), Query Frame = 2 
Query:   98 LTKNEVRITQQGKTHMYISHAQSLLTEKGAGSITIKALGRAINKAITIAEILKRRVPGLHQISDISSTELACAPQQQIVNWAPKQQQEEEDGVDADKYSXXXXXXXXXXXXXXXXXXXXXXXXDEKVATTRRVSVIAITLSFAPLDTSHIGYQSPLPPEELNL 586
            + +NE+RIT QG+   YI++A +LL EKG+  I +KA+GRAINK +TI E++KRR+ GLHQI+ I ST++          W P      E+G+                               + + TTR+VSV++ITLS   LDT ++GYQ PLP +++ +
Sbjct:   16 INENEIRITSQGRMRNYITYAMTLLEEKGSDEILLKAMGRAINKTVTIVELIKRRIVGLHQITAIQSTDITDT-------WEPL-----EEGL-------------------------------QTLETTRKVSVVSITLSKKELDTRNVGYQPPLPADQVKV 135
[Close]
BLAST of mRNA_H-paniculata_contig420.10771.1 vs. uniprot
Match: D8QTY5_SELML (Alba domain-containing protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QTY5_SELML)

HSP 1 Score: 103 bits (258), Expect = 7.810e-22
Identity = 63/161 (39.13%), Postives = 89/161 (55.28%), Query Frame = 2 
Query:   98 LTKNEVRITQQGKTHMYISHAQSLLTEKGAGSITIKALGRAINKAITIAEILKRRVPGLHQISDISSTELACAPQQQIVNWAPKQQQEEEDGVDADKYSXXXXXXXXXXXXXXXXXXXXXXXXDEKVATTRRVSVIAITLSFAPLDTSHIGYQSPLPPEEL 580
            +++NE+RIT QGK   YI++A +LL +KGA  I +KA+GRAINK + IAEI+KRR+ GLHQI+ + ST++          W P      E+G+                                 + TTR VS+I ITLS   LDT++IGYQ PL P+++
Sbjct:   16 ISENEIRITTQGKMRNYITYATNLLQDKGASEIVLKAMGRAINKTVNIAEIIKRRIAGLHQITFVGSTDITDV-------WEPL-----EEGLTT-------------------------------LETTRHVSMITITLSTKELDTANIGYQPPLSPDQV 133
[Close]
BLAST of mRNA_H-paniculata_contig420.10771.1 vs. uniprot
Match: UPI001CB8EDB6 (RGG repeats nuclear RNA binding protein A-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8EDB6)

HSP 1 Score: 104 bits (260), Expect = 8.030e-22
Identity = 64/164 (39.02%), Postives = 88/164 (53.66%), Query Frame = 2 
Query:   98 LTKNEVRITQQGKTHMYISHAQSLLTEKGAGSITIKALGRAINKAITIAEILKRRVPGLHQISDISSTELACAPQQQIVNWAPKQQQEEEDGVDADKYSXXXXXXXXXXXXXXXXXXXXXXXXDEKVATTRRVSVIAITLSFAPLDTSHIGYQSPLPPEELNLA 589
            + +NE+RIT QG+   YI++A SLL EKG+  I  KA+GRAINK +TI E++KRR+ GLHQI+ I ST++          W P      E+G+                                 + TTR VS+I ITLS   L+TS IGYQ PLP +++ +A
Sbjct:   16 IDENEIRITSQGRMRNYITYAMSLLQEKGSSEIVFKAMGRAINKTVTIVELIKRRIVGLHQITSIGSTDITDT-------WEPL-----EEGL-------------------------------LPLETTRHVSMITITLSMKELNTSSIGYQPPLPADQVKVA 136
[Close]
BLAST of mRNA_H-paniculata_contig420.10771.1 vs. uniprot
Match: A0A6A6LD01_HEVBR (Alba domain-containing protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6LD01_HEVBR)

HSP 1 Score: 104 bits (259), Expect = 8.410e-22
Identity = 69/174 (39.66%), Postives = 90/174 (51.72%), Query Frame = 2 
Query:   98 LTKNEVRITQQGKTHMYISHAQSLLTEKGAGSITIKALGRAINKAITIAEILKRRVPGLHQISDISSTELACAPQQQIVNWAPKQQQEEEDGVDADKYSXXXXXXXXXXXXXXXXXXXXXXXXDEKVATTRRVSVIAITLSFAPLDTSHIGYQSPLPPE------ELNLAGGGG 601
            + +NE+RIT QG+   YIS+A SLL EKG+  I  KA+GRAINK +TI E++KRR+ GLHQI+ I ST++          W P      E+G+                                 + TTR VS+I ITLS   L+TS +GYQSPLP E      E +  GG G
Sbjct:   16 IDENEIRITSQGRMRSYISYAMSLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQITAIGSTDITDT-------WEPL-----EEGL-------------------------------LPLETTRHVSMITITLSMKELNTSAVGYQSPLPAELVKGSAEFDYEGGNG 146
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig420.10771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6V1L4_9CHLO9.950e-2645.57Ribonuclease P subunit p25 n=1 Tax=Micractinium co... [more]
A0A2P6TCW8_CHLSO2.330e-2545.28Ribonuclease P subunit p25 n=1 Tax=Chlorella sorok... [more]
A0A388K547_CHABU2.500e-2238.14Alba domain-containing protein n=1 Tax=Chara braun... [more]
A0A7J7PXC7_9CHLO2.610e-2239.13DNA/RNA-binding protein alba-like protein n=1 Tax=... [more]
A0A383WIK4_TETOB3.320e-2239.75Alba domain-containing protein n=2 Tax=Tetradesmus... [more]
A0A2U1PXI8_ARTAN5.060e-2239.02DNA/RNA-binding protein Alba-like protein n=1 Tax=... [more]
UPI000C1D5FF56.260e-2237.42ribonuclease P protein subunit p25-like protein n=... [more]
D8QTY5_SELML7.810e-2239.13Alba domain-containing protein (Fragment) n=3 Tax=... [more]
UPI001CB8EDB68.030e-2239.02RGG repeats nuclear RNA binding protein A-like n=1... [more]
A0A6A6LD01_HEVBR8.410e-2239.66Alba domain-containing protein n=1 Tax=Hevea brasi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig420contigH-paniculata_contig420:32091..38231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score105.1
Seed ortholog evalue6.5e-20
Seed eggNOG ortholog88036.EFJ27748
KEGG koko:K14525
KEGG Pathwayko03008,ko03013,map03008,map03013
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease P protein subunit p25-like
EggNOG OGs37MQY@33090,3GEIG@35493,KOG2567@1,KOG2567@2759
EC3.1.26.5
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03029
Exons7
Model size1372
Cds size1041
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930278.6698-UTR-H-paniculata_contig420:32090..321411622930278.6698-UTR-H-paniculata_contig420:32090..32141Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig420 32091..32141 -
1691481222.491002-UTR-H-paniculata_contig420:32090..321411691481222.491002-UTR-H-paniculata_contig420:32090..32141Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig420 32091..32141 -
1622930278.6921203-UTR-H-paniculata_contig420:32419..326531622930278.6921203-UTR-H-paniculata_contig420:32419..32653Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig420 32420..32653 -
1691481222.5018668-UTR-H-paniculata_contig420:32419..326531691481222.5018668-UTR-H-paniculata_contig420:32419..32653Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig420 32420..32653 -
1622930278.8078368-UTR-H-paniculata_contig420:38185..382311622930278.8078368-UTR-H-paniculata_contig420:38185..38231Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig420 38186..38231 -
1691481222.5796435-UTR-H-paniculata_contig420:38185..382311691481222.5796435-UTR-H-paniculata_contig420:38185..38231Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig420 38186..38231 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930278.7112234-CDS-H-paniculata_contig420:32653..327711622930278.7112234-CDS-H-paniculata_contig420:32653..32771Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig420 32654..32771 -
1691481222.5112388-CDS-H-paniculata_contig420:32653..327711691481222.5112388-CDS-H-paniculata_contig420:32653..32771Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig420 32654..32771 -
1622930278.7238386-CDS-H-paniculata_contig420:32820..328821622930278.7238386-CDS-H-paniculata_contig420:32820..32882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig420 32821..32882 -
1691481222.520847-CDS-H-paniculata_contig420:32820..328821691481222.520847-CDS-H-paniculata_contig420:32820..32882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig420 32821..32882 -
1622930278.7359905-CDS-H-paniculata_contig420:34554..348061622930278.7359905-CDS-H-paniculata_contig420:34554..34806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig420 34555..34806 -
1691481222.5303133-CDS-H-paniculata_contig420:34554..348061691481222.5303133-CDS-H-paniculata_contig420:34554..34806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig420 34555..34806 -
1622930278.7609034-CDS-H-paniculata_contig420:35769..361441622930278.7609034-CDS-H-paniculata_contig420:35769..36144Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig420 35770..36144 -
1691481222.5403967-CDS-H-paniculata_contig420:35769..361441691481222.5403967-CDS-H-paniculata_contig420:35769..36144Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig420 35770..36144 -
1622930278.778993-CDS-H-paniculata_contig420:37476..376441622930278.778993-CDS-H-paniculata_contig420:37476..37644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig420 37477..37644 -
1691481222.5502834-CDS-H-paniculata_contig420:37476..376441691481222.5502834-CDS-H-paniculata_contig420:37476..37644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig420 37477..37644 -
1622930278.793232-CDS-H-paniculata_contig420:38119..381851622930278.793232-CDS-H-paniculata_contig420:38119..38185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig420 38120..38185 -
1691481222.5604405-CDS-H-paniculata_contig420:38119..381851691481222.5604405-CDS-H-paniculata_contig420:38119..38185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig420 38120..38185 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig420.10771.1prot_H-paniculata_contig420.10771.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig420 32654..38185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig420.10771.1

>prot_H-paniculata_contig420.10771.1 ID=prot_H-paniculata_contig420.10771.1|Name=mRNA_H-paniculata_contig420.10771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=347bp
MATSTAPNENSSGGSRTLTKNEVRITQQGKTHMYISHAQSLLTEKGAGSI
TIKALGRAINKAITIAEILKRRVPGLHQISDISSTELACAPQQQIVNWAP
KQQQEEEDGVDADKYSEEEGKSSQQEAEEEHKGRIDEMEKDEKVATTRRV
SVIAITLSFAPLDTSHIGYQSPLPPEELNLAGGGGRGAMRGRPPSDRGGY
TGRGRGRGWSRQPRCRIGGFPMERSSASWNRGFVVGADSAGCSEIGLAFQ
LPFQLGQQPPAAAPLSAQEAWSNHSFAHGQNYAQYGQVPPGTVQSQQQQQ
QQQQQQQHSSSSSSRSKRSLPQRSLRLRHLHPNTPRSRRWGTRRSE*
back to top

mRNA from alignment at H-paniculata_contig420:32091..38231-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig420.10771.1 ID=mRNA_H-paniculata_contig420.10771.1|Name=mRNA_H-paniculata_contig420.10771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6141bp|location=Sequence derived from alignment at H-paniculata_contig420:32091..38231- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCGCGCACCGACCACACACGGGCAGCAGCCAGAGATAGCGACACATGG
CTACTAGCACGGCGCCAAACGAAAACTCCAGTGGTGGTTCTCGTACCCTC
ACGAAGAATGAGGTGAGTCGCGGTTCACCACGCTTTGGAAGACGGTGGAC
ACAGCATAGTGTACGTACTTGCAGCTCGTAGGCGGACTTTTTCTCTCTCA
AATATCCGTATGTGTTTTCGAATCTTTAGTCTTGGCCGGTGACACGGAGG
ATACGACGCCCCTCAAGCAGGCACTACTTGAAGACTGGACAAGCCGAGCG
TCGGATGTTGAGAAACAAACAGCCAGGGGCGTGTTTTCGCACGTTAGCTT
TTTCCGACGGACTCCGTCTATAGGCGTCATCCTCGGTTTGTTGTCGACTC
GTCGAGGTCGGTTTGAAGCCAAGGCTGTTTGCTTCTGTCGTTGCACTTGA
TCTTTAGCGGTGTCGATCAGGTTTGAGAGCGTGAATGATGAGGTTTTCGC
ACCAGTCCAGCCCGTTGTGTCACCGCTATACTGTGCTGTACCGCCCGTCT
TAAAACACACGCACACGATATGTCTTCTCTGACGTAGGTGCGGATAACTC
AGCAGGGTAAAACCCATATGTACATCTCGCACGCCCAAAGTCTGCTGACG
GAGAAGGGGGCGGGTAGCATCACAATCAAAGCTCTTGGCCGGGCTATAAA
CAAGGCCATCACCATCGCGGAAATTTTGAAGAGGCGCGTTCCCGGCTTGC
ATCAGGTACACTGTACAGTATGAGAACAAAACGCGTTCGGCTCGTGCGCG
GCACAACTTAGACTTGGCCTCGAGAAAGGGCAAGAAAGAGAGACAGAGAC
AGAGAGACAGAGAGACAGAGACAGAGAGACTCAATAATGGACGACATGGT
TTACCATTTTCCCTGCTTACAGGATAGCGTTGGATTTCCTCACAAGAATT
CAGTCTGTGAAGCGGAATATTACAGTTTGTTCCGACTTTGACGTGTTTGT
TTTGAAGCCAGCGCATCCTCTGCTCTGGTTGTTTGCTCTTGGCTATAAAA
TGTGCGAATTTTTGGAATTTTCTCCCCATCTACAATACTGCAAATGAAGA
GAACTCCGTAGAGTGGAGGGCGGTGGTTGTTGTGTGGCGCATTTCGATCC
ATTGAAAATGCAGCCACTGGCTGAACTGACTGTACTGTGTGGCCGACAGT
CGTCCTATTGTCTGGTCTTCGTTTCTGATAGTGCGATGCTACGCAATTTC
CCATTCGCGTTTGTTTAATCGCCGCCTGGGACGAGATGGCCTTCTCTGTC
TTAAGCTTCCGCAGCAGGTGCTGTAGAGGCGCTGGGTGCCACTGCAACGT
TCAGTGTTGATTTCTTTCCCTCTCACAAATATGAAAGCGAGCCGTTTGGA
AGCATCAACCAGAGAGCGCCACGTAGAGGTAGATCAGGCACATACAATAG
TGAAGTCTCCACAAACGACAAAATCTGAAATATACAATATATATTAATTG
TAGAGCTCTACCATCCTATGTACGAGTACATCACTATCCTTGATTCGTCG
ATCCAATCCTCACTACCTTCCGGTGTGGTTTAACGGTTTATCTCAAATGC
AACACCAGTGCATCCACTTACCCCGCTGTTGGCATGATCGCATCGAGCGT
AAGATGATGTACTGCATGCGAAGGGTGCAGTGTTTCGTCAATATATTTTG
TGAGATGGCTAGGCTTCGCTCATGGCTGCGAGTCGCAGATGGATTGTCCT
CTACGAGGTATAACATTTTGAAGAATACAATTTAGTACTGCTGCGGTTCG
CACCAGTGGTATGGATTGCAGAAGAAATACTGGCCTACATGTAAACACAG
ACATAAGGGCTACTAAATGCGTCCCTTTCGTTCCTGGCGATTGTTTCGGA
ACAAAAAATGAATCTGAGAATAATGGCAGAGTGCTGCGGGCGTTGTCTAC
AAAGCCCGACTCCACAACAGGACTTCATAGCTCACGCTATCATATTTTCT
CACGTCTTCACTTGCGCTGACTTTTCTTCTTTACGTTTTGTGGCGTGCCC
GCCTTCTCCTAAATATATGCTGTATGGTACATTCTAGATTTCCGACATAT
CGTCGACAGAGTTGGCGTGCGCTCCGCAGCAGCAGATAGTGAACTGGGCG
CCAAAGCAACAGCAGGAGGAGGAAGACGGAGTCGATGCAGACAAGTACAG
CGAGGAGGAGGGGAAAAGCTCCCAGCAGGAGGCAGAGGAGGAACACAAGG
GCAGGATCGACGAAATGGAAAAGGATGAGAAGGTCGCCACGACCCGTCGC
GTCAGCGTCATTGCTATCACCCTGTCGTTTGCTCCTCTGGACACGTCGCA
CATCGGGTACCAGTCGCCCCTGCCTCCAGAGGAGCTTAACCTCGCCGGCG
GCGGCGGACGCGGTGCCATGCGAGGCCGGCCCCCCTCGGACCGAGGGGGC
TACACTGGCCGTGTGAGTTGTGGGCATCACACCGTATAATCCATAACAGT
ACAGTAGCCATTGACAGTATTCTAATGCCGACTTGTGGTTACAGAGAACA
TCACCCCAGATGGCTACTTTCATGAAGTCCCGCCACTTCTGTCAAACGAG
CACACCTTTCGAGAGATCGATTTCCAGCGGGCCTTTCCAATAACACAAAC
TTTCGGTGTCAACAGCCCCATAGATGGTTATCGAGAAAAACGGTGTTTCG
AAAACGTTGTCACCCATGCACCGGCCGCAATAAGCCCTGTGAACTACCGT
CCACGGGCAGGATGAGCTGTGGTACTCCACAATAATACAGTATGATTATG
GGTTTGACCATTGTGGTCTCCCTTGTGGAAAAATTACCCTTTTCACTGGC
TATCAGAACAATTATCTCGTTACGTGTAACCGCACGTACCGGCCTGGGCC
TGAGCCTGGCCTTGTCGAGTGTTTTTCTGCTCAAACTAAATATTTGAATG
TACACATGATGTGCATATCCCGACCTGGTTCGAGTCTCGACGCGCGCGCT
TACGCTTTTGTTTGGTTTGGCGGTACTACCTGCGTGCGAATGGTCGAAGT
CGCAAAACCAATGCTGTGTGTTCGACTGTTATACGCGGGTTTATATAGCT
ATGCTTTTTGAGCGTCCTGACATACCCACCACCACTAGGCTTTGTGGATG
TTTGTGCTAATAGCTCTCATATGTATGTACAATATACTGACTGCTCTGCT
GGGGACGGGCCAGCGTTTGTTGTGACAAAGAGGAAAATTTCGTGCGAAAA
TAGACGGCATCACGCCGAAAGAATGCACGGCAATCTTAAGAAAGAAGTCT
ACTGCATCGTGTTGTATGTGCATACGGAACGGTCGTTATTTTGCCTTCTT
GAAGCTTTTTTCTCGCTTCTGGGAACTAATCAGGAAACCTTTTTCACGTC
TGCTTTCGTTGATGTTGAACATCAGGGTCGAGGGAGAGGCTGGAGCCGGC
AACCGAGATGCCGGATTGGAGGATTTCCGATGGAAAGATCTTCTGCCAGC
TGGAACCGCGGTTTTGTGGTTGGTGCTGACAGCGCCGGCTGCAGCGAAAT
CGGGCTGGCTTTCCAGTTACCTTTCCAGCTAGGGCAGCAACCTCCTGCCG
CAGCGCCGTTGAGTGCCCAGGAGGCGTGGTCCAACCACTCTTTTGCGCAC
GGCCAAAACTACGCACAATATGGACAGGTAAAATTTGCCTGAAAAACGGA
TTTTGTAGCGGAAGGCAGGGGTAGGGTGAGATGTATGGTTGAGATTTCCC
ACGCACTGCTAATTGTGTTGTACCCTGCTTGTGCGAAATGTCCTGTGGCC
TCGTCCCTTTAATATCTCTTGCTGGGTGTTTTCCTCCCCTCTACGTGGAC
CTGAACGAGGCACGCTCACCCCGATTGGCCGAATCCATCAACATGACCCG
ATCCATGAACCCAATTCGTAGACTCCTTTGGGTTGGTAGAGCGCTCATAG
GGCCAACCCTGCGTTGTCAGCGCGTAAATATATTTCTCGACCGCTAGAGG
TAAGCGCGAGAACTCCACCGCGCCGAGGCAGGAGGAATGAGATAGCCATA
CTAAAATCACGTCAGAACCACTGTCAAGATATATACTTCCCTTTTTAGCG
CACCGGAAGGGTGGCAAATTGTGTGACCATGGCGTGTGAAACATTGTGTG
TAATGAACTCAAACGGAAGATAGCACCAACGGTTGGTAACGACATACATG
AACCCCGTCCGCAGTCAGGGGGACTTGAGGCTTCTCATTTCGGGGCTTCT
CGCTATATACCTGCTGTTTGTTAACTGTACGGTTTAGTCGTTGAAGAAGG
CTCGTATGCATAGCTCCTCCACTATATGAGCACTTTTCTCTGTTTTTCAG
ATACGATTTTCCTTCGTGGCCATGTACAAGGTGAGCCAACGCTATTGCCG
CCGCCGTCGTCTCTTTCTGTCTGTTAACCTTTCGGCAAGCTACGTCCGAA
AAAGGACTGCTCCTCAAGGTACAGACAGCTGTTAGCCCTGAACACCTCTA
TCGGCAACGGTTGGTTGTTTCCATGGTTAAGAGCTATTCGCACCGTATAT
TCTCCAAGCAAACAAAAATGTCAACCACAGAAATTAATCGCCCATGTGGT
GCTACAGCAGCTATGTGAAGTCTCAATAGGTTCAACATTCCTCGATCTGT
CTAAGTAAAAAATGTAAGTAATCATTAATCTGTGGTATGCTAGTACGGGT
TTCGCTATCTGGTCGCGTTTGGAACCGAATTTTCATGCACCCACCGAGAG
TTGCCGACGCAGTGGTATGTGCCGCGCTCGGCGCGTCGTTTGGGACCAAT
GGGGTGGTGGGATGAGCGTGGCAAGTTGGTCGGCAAGCGGGCAGCTGAGA
GGCATATTTGTAAGGCCAGTGTGTACTGGCTTCCACTGAAAGTCTTTTTT
GTTAAAGATATTGATTTTAATAGGGGGGGTCATTGCCCCTCCGCCTGTCG
TTCGATAGGCCTTCTTTCGACCAAACGATTGTTTGGCCTCGTCCCGGCGG
TCTTCCCAAGCCACCGTCGGTCGGCCGCGCTTGTAGTACACATTGTAGGG
CCACTGTTTGCGACTTGGTCATGTATTAACTGCTTCCACATCCCTCCCTC
TACTTAAGCCTTCTTTCAACCAAACGATTGTCTTGGCATCGTCCGGGCGG
TCTTCCGAAGCCACCACCGGTCGGTCGCGCTTGTAGTACACATTGTAGGG
CCACTGTTTGCGACTTGTTCATGTATTAACTACTCCCAAATCCCTCCCTC
TGCTTTCCTCATACGGGTGCCTCTTCCTGCCTTTTTATCCCCATGTGTCC
AATGCGGTCTCTATCACACCACAACTCTCCTTCCTCTCGGGCGCTGCAGG
TACCGCCGGGCACGGTCCAGAGCCAGCAGCAGCAGCAGCAGCAGCAACAG
CAGCAGCAACAGCAGCAGCAACAGCAGCAGCAACAACAACAGCAGCAGCA
ACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCAAGCGTTCTTTACCC
CAACGCAGCCTTCGCCTCCGCCACCTCCACCCCAACACCCCTCGCAGCAG
GCGGTGGGGTACCCGACGTTCGGAGTAGCACAGCCCGTCGCGGGGTACCA
GGCCGCCATGCAGGTCAACCATTTGTTTCGGCAGCCACAGGCCTACCAAC
AGATGATGTATCCCCCTGGGGGCGTGGGGGGCTATTCCGCGTCCCCACCA
CCCCTTTACAATCCTAATGGCGTCAATGCGAGTGCCGCGCCGGTTGGCTA
CAGCCCCACCCCGCACTGGCCCCCCGTCGGGACGTACGGAACCAACGCGC
AATATCAACCAGGTAGTATCTTGAATTTGGTAGACTGCGGGTCATTTTGT
TTCTTTTTTGTAAAGTGTTCCAAGAAATGGCTTGGATGGCCGATGTCGTG
GAATCGTTAGTGTGTGGTCGGCTTTTTATCTCAAGAGGAGGCATTGGGAC
TATTTTCAAGTTTCAAGGTCTAGCGTCTTTCTTCACCCTAATCCCACCCC
CTCCCGCGCGTGTGTTTGCTATCCCCCCCCCCCCCTCTCTTCCCCTTCCC
CGTTGCCGCCACCCTTCCCCCCCTTTTCTGCCTGGTATAGTGTTGCCTCA
ATGGGGCGGTACGAGTGCCCAAGCTAGCGGGCGCGGCGGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig420:32091..38231-

>mRNA_H-paniculata_contig420.10771.1 ID=mRNA_H-paniculata_contig420.10771.1|Name=mRNA_H-paniculata_contig420.10771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2082bp|location=Sequence derived from alignment at H-paniculata_contig420:32091..38231- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTACTAGCACGGCGCCAAACGAAAACTCCAGTGGTGGTTCTCGTAC
CCTCACGAAGAATGAGATGGCTACTAGCACGGCGCCAAACGAAAACTCCA
GTGGTGGTTCTCGTACCCTCACGAAGAATGAGGTGCGGATAACTCAGCAG
GGTAAAACCCATATGTACATCTCGCACGCCCAAAGTCTGCTGACGGAGAA
GGGGGCGGGTAGCATCACAATCAAAGCTCTTGGCCGGGCTATAAACAAGG
CCATCACCATCGCGGAAATTTTGAAGAGGCGCGTTCCCGGCTTGCATCAG
GTGCGGATAACTCAGCAGGGTAAAACCCATATGTACATCTCGCACGCCCA
AAGTCTGCTGACGGAGAAGGGGGCGGGTAGCATCACAATCAAAGCTCTTG
GCCGGGCTATAAACAAGGCCATCACCATCGCGGAAATTTTGAAGAGGCGC
GTTCCCGGCTTGCATCAGATTTCCGACATATCGTCGACAGAGTTGGCGTG
CGCTCCGCAGCAGCAGATAGTGAACTGGGCGCCAAAGCAACAGCAGGAGG
AGGAAGACGGAGTCGATGCAGACAAGTACAGCGAGGAGGAGGGGAAAAGC
TCCCAGCAGGAGGCAGAGGAGGAACACAAGGGCAGGATCGACGAAATGGA
AAAGGATGAGAAGGTCGCCACGACCCGTCGCGTCAGCGTCATTGCTATCA
CCCTGTCGTTTGCTCCTCTGGACACGTCGCACATCGGGTACCAGTCGCCC
CTGCCTCCAGAGGAGCTTAACCTCGCCGGCGGCGGCGGACGCGGTGCCAT
GCGAGGCCGGCCCCCCTCGGACCGAGGGGGCTACACTGGCCGTATTTCCG
ACATATCGTCGACAGAGTTGGCGTGCGCTCCGCAGCAGCAGATAGTGAAC
TGGGCGCCAAAGCAACAGCAGGAGGAGGAAGACGGAGTCGATGCAGACAA
GTACAGCGAGGAGGAGGGGAAAAGCTCCCAGCAGGAGGCAGAGGAGGAAC
ACAAGGGCAGGATCGACGAAATGGAAAAGGATGAGAAGGTCGCCACGACC
CGTCGCGTCAGCGTCATTGCTATCACCCTGTCGTTTGCTCCTCTGGACAC
GTCGCACATCGGGTACCAGTCGCCCCTGCCTCCAGAGGAGCTTAACCTCG
CCGGCGGCGGCGGACGCGGTGCCATGCGAGGCCGGCCCCCCTCGGACCGA
GGGGGCTACACTGGCCGTGGTCGAGGGAGAGGCTGGAGCCGGCAACCGAG
ATGCCGGATTGGAGGATTTCCGATGGAAAGATCTTCTGCCAGCTGGAACC
GCGGTTTTGTGGTTGGTGCTGACAGCGCCGGCTGCAGCGAAATCGGGCTG
GCTTTCCAGTTACCTTTCCAGCTAGGGCAGCAACCTCCTGCCGCAGCGCC
GTTGAGTGCCCAGGAGGCGTGGTCCAACCACTCTTTTGCGCACGGCCAAA
ACTACGCACAATATGGACAGGGTCGAGGGAGAGGCTGGAGCCGGCAACCG
AGATGCCGGATTGGAGGATTTCCGATGGAAAGATCTTCTGCCAGCTGGAA
CCGCGGTTTTGTGGTTGGTGCTGACAGCGCCGGCTGCAGCGAAATCGGGC
TGGCTTTCCAGTTACCTTTCCAGCTAGGGCAGCAACCTCCTGCCGCAGCG
CCGTTGAGTGCCCAGGAGGCGTGGTCCAACCACTCTTTTGCGCACGGCCA
AAACTACGCACAATATGGACAGGTACCGCCGGGCACGGTCCAGAGCCAGC
AGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGTACCGCCGGGCACGG
TCCAGAGCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACACAGC
AGCAGCAGCAGCAGCAGGAGCAAGCGTTCTTTACCCCAACGCAGCCTTCG
CCTCCGCCACCTCCACCCCAACACCCCTCGCAGCAGGCGGTGGGGTACCC
GACGTTCGGAGTAGCAGCAGCAGCAGCAGCAGCAGGAGCAAGCGTTCTTT
ACCCCAACGCAGCCTTCGCCTCCGCCACCTCCACCCCAACACCCCTCGCA
GCAGGCGGTGGGGTACCCGACGTTCGGAGTAG
back to top