mRNA_H-paniculata_contig4198.10764.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4198.10764.1
Unique NamemRNA_H-paniculata_contig4198.10764.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4198.10764.1 vs. uniprot
Match: D7FZ88_ECTSI (Aurora kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ88_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.640e-18
Identity = 57/118 (48.31%), Postives = 65/118 (55.08%), Query Frame = 1 
Query:    1 AVRDGRGDLEVTFDDGVVVVVDSKAKWMRVE-------------PVSKPGGAPLAV----SVTYDLRKDTTGERSRTXXXXXXXXXXXAGDARGKARRMPRDVKERMKALPRFIAVLR 303
            A R+G GDLEV F DGV+VVVD+KAKWMRVE             P     GAP+      SVTYDL K   G R               G +R    RMPRDVK+RMKALPRFIA+L+
Sbjct: 1240 ACRNGDGDLEVRFCDGVMVVVDAKAKWMRVERRXXXXXXXXXXXPPHPGSGAPIPSKTTRSVTYDLGKHAAGRRKEARG---------VGGSRELGERMPRDVKDRMKALPRFIAMLK 1348
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BLAST of mRNA_H-paniculata_contig4198.10764.1 vs. uniprot
Match: A0A6H5L179_9PHAE (Aurora kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L179_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.110e-16
Identity = 53/118 (44.92%), Postives = 63/118 (53.39%), Query Frame = 1 
Query:    1 AVRDGRGDLEVTFDDGVVVVVDSKAKWMRVEP-----------------VSKPGGAPLAVSVTYDLRKDTTGERSRTXXXXXXXXXXXAGDARGKARRMPRDVKERMKALPRFIAVLR 303
            A R+G GDLEV F DGV+VVVD+KAKWMRVE                    +P  +    SVTYDL K   G R+              G +R    R+PRDVK RMKALPRFIA+L+
Sbjct: 1537 AFRNGDGDLEVLFCDGVMVVVDAKAKWMRVERRQXXXXXXXXXXXXXTGSGRPTPSTTTRSVTYDLGKHAAGRRTEARGI---------GGSRELGERLPRDVKNRMKALPRFIAILK 1645
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4198.10764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZ88_ECTSI2.640e-1848.31Aurora kinase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5L179_9PHAE1.110e-1644.92Aurora kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4198contigH-paniculata_contig4198:5211..5891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue7.2e-15
Seed eggNOG ortholog2880.D7FZ88
KEGG koko:K06660,ko:K08863
KEGG Pathwayko04068,ko04111,ko04113,map04068,map04111,map04113
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of centriole replication
EggNOG OGsKOG0575@1,KOG0575@2759
EC2.7.11.21
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Exons2
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930277.1977022-CDS-H-paniculata_contig4198:5210..54921622930277.1977022-CDS-H-paniculata_contig4198:5210..5492Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4198 5211..5492 -
1691481221.7847726-CDS-H-paniculata_contig4198:5210..54921691481221.7847726-CDS-H-paniculata_contig4198:5210..5492Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4198 5211..5492 -
1622930277.2165976-CDS-H-paniculata_contig4198:5861..58911622930277.2165976-CDS-H-paniculata_contig4198:5861..5891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4198 5862..5891 -
1691481221.7985382-CDS-H-paniculata_contig4198:5861..58911691481221.7985382-CDS-H-paniculata_contig4198:5861..5891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4198 5862..5891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4198.10764.1prot_H-paniculata_contig4198.10764.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4198 5211..5891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4198.10764.1

>prot_H-paniculata_contig4198.10764.1 ID=prot_H-paniculata_contig4198.10764.1|Name=mRNA_H-paniculata_contig4198.10764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
AVRDGRGDLEVTFDDGVVVVVDSKAKWMRVEPVSKPGGAPLAVSVTYDLR
KDTTGERSRTGEGGTEGKGGSAGDARGKARRMPRDVKERMKALPRFIAVL
RKSS
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mRNA from alignment at H-paniculata_contig4198:5211..5891-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4198.10764.1 ID=mRNA_H-paniculata_contig4198.10764.1|Name=mRNA_H-paniculata_contig4198.10764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=681bp|location=Sequence derived from alignment at H-paniculata_contig4198:5211..5891- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGTAAGGGATGGTCGAGGGGACTTGGAGGTGAGGATGTACGTTAAGTA
GCGTCGTGTTTTTTTCTTGCTCTGGGTTTTGTTTTCCAATTGTGAAAGTA
CGTGGGCACGTGTTACCTTCCCCCCTCGTTTGTCTTCGGTTGTTGGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCCGCCTACGTGGTCAATAGG
GAGGTAAGGCGCGGGGAGGAGCTGCATGTATACACTACTGCCCTGTATAT
AGATGGCGTGGGGGTCTAAGCCTACCGGCCCGCTGACGCACCGGCGCATT
GATGTATTAACTACTAGTCAGTCATGTACTATTATTAGTGGATCCTCAAA
GTAACTGGTATTAGATACTATTGGGTTACTTTGTTTACTCAACACGCAGG
TGACGTTCGACGATGGCGTGGTGGTCGTGGTCGATTCCAAGGCCAAGTGG
ATGCGCGTGGAACCAGTCTCGAAACCAGGAGGGGCACCCCTGGCTGTGTC
AGTCACCTACGATCTTCGGAAAGATACAACAGGCGAAAGGAGCCGAACCG
GAGAGGGCGGCACAGAGGGAAAAGGGGGCAGCGCAGGGGATGCTCGCGGA
AAAGCCCGGCGTATGCCGCGGGATGTAAAAGAGAGGATGAAGGCATTGCC
TCGTTTTATTGCTGTACTTAGAAAAAGCTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig4198:5211..5891-

>mRNA_H-paniculata_contig4198.10764.1 ID=mRNA_H-paniculata_contig4198.10764.1|Name=mRNA_H-paniculata_contig4198.10764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig4198:5211..5891- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGTAAGGGATGGTCGAGGGGACTTGGAGGCCGTAAGGGATGGTCGAGG
GGACTTGGAGGTGACGTTCGACGATGGCGTGGTGGTCGTGGTCGATTCCA
AGGCCAAGTGGATGCGCGTGGAACCAGTCTCGAAACCAGGAGGGGCACCC
CTGGCTGTGTCAGTCACCTACGATCTTCGGAAAGATACAACAGGCGAAAG
GAGCCGAACCGGAGAGGGCGGCACAGAGGGAAAAGGGGGCAGCGCAGGGG
ATGCTCGCGGAAAAGCCCGGCGTATGCCGCGGGATGTAAAAGAGAGGATG
AAGGCATTGCCTCGTTTTATTGCTGTACTTAGAAAAAGCTCCGTGACGTT
CGACGATGGCGTGGTGGTCGTGGTCGATTCCAAGGCCAAGTGGATGCGCG
TGGAACCAGTCTCGAAACCAGGAGGGGCACCCCTGGCTGTGTCAGTCACC
TACGATCTTCGGAAAGATACAACAGGCGAAAGGAGCCGAACCGGAGAGGG
CGGCACAGAGGGAAAAGGGGGCAGCGCAGGGGATGCTCGCGGAAAAGCCC
GGCGTATGCCGCGGGATGTAAAAGAGAGGATGAAGGCATTGCCTCGTTTT
ATTGCTGTACTTAGAAAAAGCTCC
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