mRNA_H-paniculata_contig41974.10763.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41974.10763.1
Unique NamemRNA_H-paniculata_contig41974.10763.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig41974.10763.1 vs. uniprot
Match: D8LTL2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL2_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 9.420e-21
Identity = 41/58 (70.69%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 HQVHAVHSVPGQDVIVTSSSLGLRGPHFLTVWDLPTEEERLSEKQFLPALASREETPS 174
            H+V+AVHS+PGQDV++TSSS+   GPH LTVWDLPT+EER +EKQFLP + SREETP+
Sbjct:  169 HEVNAVHSIPGQDVVITSSSISSTGPHVLTVWDLPTQEERSTEKQFLPEMKSREETPT 226
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BLAST of mRNA_H-paniculata_contig41974.10763.1 vs. uniprot
Match: A0A7S1XQS9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQS9_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.720e-12
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 HQVHAVHSVPGQDVIVTSSSLGLRGPHFLTVWDLPTEEERLSEKQFLPALASR 159
            H+V A+  + GQD+ VTSS+LG  GPHFL++WDLPTEEER S  QFLP L  R
Sbjct:  104 HKVLAMTEITGQDICVTSSTLGPLGPHFLSLWDLPTEEERASGGQFLPVLIHR 156
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BLAST of mRNA_H-paniculata_contig41974.10763.1 vs. uniprot
Match: F0YQE5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQE5_AURAN)

HSP 1 Score: 50.8 bits (120), Expect = 7.780e-6
Identity = 24/58 (41.38%), Postives = 33/58 (56.90%), Query Frame = 1 
Query:    1 HQVHAVHSVPGQDVIVTSSSLGLRGPHFLTVWDLPTEEERLSEKQFLPALASREETPS 174
            H+V A   V G  ++VT SS+   GPH++++W LP+      E   LP L  R ETPS
Sbjct:  447 HKVLACGGVVGTSIVVTGSSIAPGGPHYVSLWSLPSRSGGAREGPLLPVLVHRRETPS 504
[Close]
BLAST of mRNA_H-paniculata_contig41974.10763.1 vs. uniprot
Match: F0YF09_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YF09_AURAN)

HSP 1 Score: 50.8 bits (120), Expect = 7.830e-6
Identity = 24/58 (41.38%), Postives = 33/58 (56.90%), Query Frame = 1 
Query:    1 HQVHAVHSVPGQDVIVTSSSLGLRGPHFLTVWDLPTEEERLSEKQFLPALASREETPS 174
            H+V A   V G  ++VT SS+   GPH++++W LP+      E   LP L  R ETPS
Sbjct:  221 HKVLACGGVVGTSIVVTGSSIAPGGPHYVSLWSLPSRSGGAREGPLLPVLVHRRETPS 278
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41974.10763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LTL2_ECTSI9.420e-2170.69EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S1XQS9_9STRA1.720e-1262.26Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F0YQE5_AURAN7.780e-641.38Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
F0YF09_AURAN7.830e-641.38Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41974contigH-paniculata_contig41974:181..354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue2.5e-17
Seed eggNOG ortholog2880.D8LTL2
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.WD40 repeats
EggNOG OGs2CUZ5@1,2RPUY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930277.1393454-CDS-H-paniculata_contig41974:180..3541622930277.1393454-CDS-H-paniculata_contig41974:180..354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41974 181..354 +
1691481221.769246-CDS-H-paniculata_contig41974:180..3541691481221.769246-CDS-H-paniculata_contig41974:180..354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41974 181..354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41974.10763.1prot_H-paniculata_contig41974.10763.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41974 181..354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41974.10763.1

>prot_H-paniculata_contig41974.10763.1 ID=prot_H-paniculata_contig41974.10763.1|Name=mRNA_H-paniculata_contig41974.10763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
HQVHAVHSVPGQDVIVTSSSLGLRGPHFLTVWDLPTEEERLSEKQFLPAL
ASREETPS
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mRNA from alignment at H-paniculata_contig41974:181..354+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41974.10763.1 ID=mRNA_H-paniculata_contig41974.10763.1|Name=mRNA_H-paniculata_contig41974.10763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig41974:181..354+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATCAGGTGCATGCCGTCCACAGCGTGCCGGGACAAGATGTGATAGTTAC
CAGCAGTTCCCTAGGATTGCGTGGCCCGCATTTTCTGACTGTGTGGGACC
TGCCTACAGAAGAGGAACGCTTAAGTGAGAAACAGTTCTTGCCGGCATTG
GCCAGCCGAGAGGAGACACCTTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig41974:181..354+

>mRNA_H-paniculata_contig41974.10763.1 ID=mRNA_H-paniculata_contig41974.10763.1|Name=mRNA_H-paniculata_contig41974.10763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig41974:181..354+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATCAGGTGCATGCCGTCCACAGCGTGCCGGGACAAGATGTGATAGTTAC
CAGCAGTTCCCTAGGATTGCGTGGCCCGCATTTTCTGACTGTGTGGGACC
TGCCTACAGAAGAGGAACGCTTAAGTGAGAAACAGTTCTTGCCGGCATTG
GCCAGCCGAGAGGAGACACCTTCTCATCAGGTGCATGCCGTCCACAGCGT
GCCGGGACAAGATGTGATAGTTACCAGCAGTTCCCTAGGATTGCGTGGCC
CGCATTTTCTGACTGTGTGGGACCTGCCTACAGAAGAGGAACGCTTAAGT
GAGAAACAGTTCTTGCCGGCATTGGCCAGCCGAGAGGAGACACCTTCT
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