mRNA_H-paniculata_contig41931.10760.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41931.10760.1
Unique NamemRNA_H-paniculata_contig41931.10760.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41931.10760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41931contigH-paniculata_contig41931:1346..1691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size347
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930276.5961277-UTR-H-paniculata_contig41931:1345..13581622930276.5961277-UTR-H-paniculata_contig41931:1345..1358Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41931 1346..1358 +
1691481221.4929116-UTR-H-paniculata_contig41931:1345..13581691481221.4929116-UTR-H-paniculata_contig41931:1345..1358Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41931 1346..1358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930276.6165352-CDS-H-paniculata_contig41931:1358..16911622930276.6165352-CDS-H-paniculata_contig41931:1358..1691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41931 1359..1691 +
1691481221.5038466-CDS-H-paniculata_contig41931:1358..16911691481221.5038466-CDS-H-paniculata_contig41931:1358..1691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41931 1359..1691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41931.10760.1prot_H-paniculata_contig41931.10760.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41931 1359..1691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41931.10760.1

>prot_H-paniculata_contig41931.10760.1 ID=prot_H-paniculata_contig41931.10760.1|Name=mRNA_H-paniculata_contig41931.10760.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MPLLGLFLVSIWISPTRLPYSPSSGRRYPSWYSYHQSLVRFFQQLLEVDA
HEVVDFWAENSFSFVCACFLCSRYSSSFVLVCWFACSKYPYSLVLFLLHF
FFLTPGRLRQK
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mRNA from alignment at H-paniculata_contig41931:1346..1691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41931.10760.1 ID=mRNA_H-paniculata_contig41931.10760.1|Name=mRNA_H-paniculata_contig41931.10760.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=346bp|location=Sequence derived from alignment at H-paniculata_contig41931:1346..1691+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAATTCCATGAATGCCTCTACTCGGGCTGTTCCTGGTCAGCATCTGGA
TCTCCCCCACCCGTTTGCCCTACTCTCCCAGCAGCGGCAGACGGTACCCT
AGTTGGTACTCTTATCATCAAAGCTTGGTTCGCTTCTTCCAACAACTTCT
CGAGGTCGATGCTCATGAGGTGGTTGATTTTTGGGCGGAAAACTCCTTCA
GCTTCGTTTGCGCCTGCTTTTTGTGCTCGAGATATTCGTCAAGCTTCGTC
TTAGTATGCTGGTTTGCATGCTCAAAATATCCGTACTCCTTGGTTTTGTT
TCTTCTACATTTTTTTTTTTTAACCCCTGGAAGGCTGAGGCAAAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig41931:1346..1691+

>mRNA_H-paniculata_contig41931.10760.1 ID=mRNA_H-paniculata_contig41931.10760.1|Name=mRNA_H-paniculata_contig41931.10760.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig41931:1346..1691+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTCTACTCGGGCTGTTCCTGGTCAGCATCTGGATCTCCCCCACCCG
TTTGCCCTACTCTCCCAGCAGCGGCAGACGGTACCCTAGTTGGTACTCTT
ATCATCAAAGCTTGGTTCGCTTCTTCCAACAACTTCTCGAGGTCGATGCT
CATGAGGTGGTTGATTTTTGGGCGGAAAACTCCTTCAGCTTCGTTTGCGC
CTGCTTTTTGTGCTCGAGATATTCGTCAAGCTTCGTCTTAGTATGCTGGT
TTGCATGCTCAAAATATCCGTACTCCTTGGTTTTGTTTCTTCTACATTTT
TTTTTTTTAACCCCTGGAAGGCTGAGGCAAAAAATGCCTCTACTCGGGCT
GTTCCTGGTCAGCATCTGGATCTCCCCCACCCGTTTGCCCTACTCTCCCA
GCAGCGGCAGACGGTACCCTAGTTGGTACTCTTATCATCAAAGCTTGGTT
CGCTTCTTCCAACAACTTCTCGAGGTCGATGCTCATGAGGTGGTTGATTT
TTGGGCGGAAAACTCCTTCAGCTTCGTTTGCGCCTGCTTTTTGTGCTCGA
GATATTCGTCAAGCTTCGTCTTAGTATGCTGGTTTGCATGCTCAAAATAT
CCGTACTCCTTGGTTTTGTTTCTTCTACATTTTTTTTTTTTAACCCCTGG
AAGGCTGAGGCAAAAA
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