mRNA_H-paniculata_contig4184.10743.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4184.10743.1
Unique NamemRNA_H-paniculata_contig4184.10743.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4184.10743.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 9.570e-10
Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = -1 
Query:   86 TLAQLSLKLAEVGLVTGSSKLQRGLKAMGATKANRRITPSLSCTHRKIRVDFILNQASKGCASYQSGYSTIHVDESWFYLIRD 334
            TL Q+S +L ++GL  G   ++R    +GA K   RI PSLS   ++ R+DFI ++  +    Y    + +H+DESWFYL+R+
Sbjct:   85 TLRQVSDQLTDLGLEFGKDTVRRWFSKLGAAKKAGRIKPSLSDAQKRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMRE 167
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4184.10743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE9.570e-1038.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4184contigH-paniculata_contig4184:1798..2134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size338
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930273.6908295-UTR-H-paniculata_contig4184:1797..18341622930273.6908295-UTR-H-paniculata_contig4184:1797..1834Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4184 1798..1834 +
1691481220.184491-UTR-H-paniculata_contig4184:1797..18341691481220.184491-UTR-H-paniculata_contig4184:1797..1834Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4184 1798..1834 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930273.7102656-CDS-H-paniculata_contig4184:1834..21341622930273.7102656-CDS-H-paniculata_contig4184:1834..2134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4184 1835..2134 +
1691481220.1952493-CDS-H-paniculata_contig4184:1834..21341691481220.1952493-CDS-H-paniculata_contig4184:1834..2134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4184 1835..2134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4184.10743.1prot_H-paniculata_contig4184.10743.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4184 1835..2134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4184.10743.1

>prot_H-paniculata_contig4184.10743.1 ID=prot_H-paniculata_contig4184.10743.1|Name=mRNA_H-paniculata_contig4184.10743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
MEPTYFSRGNTRTRSSVADEVEPRFVHVNRAVAALIAGAPLGRLIKDEVH
PDLPVRARQARGDAPICLCCSHCFEPALEFGASCYETDFGKLEGELGKGQ
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mRNA from alignment at H-paniculata_contig4184:1798..2134+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4184.10743.1 ID=mRNA_H-paniculata_contig4184.10743.1|Name=mRNA_H-paniculata_contig4184.10743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=337bp|location=Sequence derived from alignment at H-paniculata_contig4184:1798..2134+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATAATTTTGGGAACGTGACTCTTGTGGTGCACCTTGATGGAGCCCACCT
ATTTCTCCCGGGGGAACACGCGAACGCGCTCCTCCGTCGCGGATGAGGTA
GAACCACGATTCGTCCACGTGAATCGTGCTGTAGCCGCTCTGATAGCTGG
CGCACCCCTTGGACGCTTGATTAAGGATGAAGTCCACCCGGATCTTCCTG
TGCGTGCACGACAGGCTCGGGGTGATGCGCCGATTTGCCTTTGTTGCTCC
CATTGCTTTGAGCCCGCGCTGGAGTTTGGAGCTTCCTGTTACGAGACCGA
CTTCGGCAAGCTTGAGGGAGAGCTGGGCAAGGGTCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4184:1798..2134+

>mRNA_H-paniculata_contig4184.10743.1 ID=mRNA_H-paniculata_contig4184.10743.1|Name=mRNA_H-paniculata_contig4184.10743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig4184:1798..2134+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCCCACCTATTTCTCCCGGGGGAACACGCGAACGCGCTCCTCCGT
CGCGGATGAGGTAGAACCACGATTCGTCCACGTGAATCGTGCTGTAGCCG
CTCTGATAGCTGGCGCACCCCTTGGACGCTTGATTAAGGATGAAGTCCAC
CCGGATCTTCCTGTGCGTGCACGACAGGCTCGGGGTGATGCGCCGATTTG
CCTTTGTTGCTCCCATTGCTTTGAGCCCGCGCTGGAGTTTGGAGCTTCCT
GTTACGAGACCGACTTCGGCAAGCTTGAGGGAGAGCTGGGCAAGGGTCAA
ATGGAGCCCACCTATTTCTCCCGGGGGAACACGCGAACGCGCTCCTCCGT
CGCGGATGAGGTAGAACCACGATTCGTCCACGTGAATCGTGCTGTAGCCG
CTCTGATAGCTGGCGCACCCCTTGGACGCTTGATTAAGGATGAAGTCCAC
CCGGATCTTCCTGTGCGTGCACGACAGGCTCGGGGTGATGCGCCGATTTG
CCTTTGTTGCTCCCATTGCTTTGAGCCCGCGCTGGAGTTTGGAGCTTCCT
GTTACGAGACCGACTTCGGCAAGCTTGAGGGAGAGCTGGGCAAGGGTCAA
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